Wall clock time and date at job start Tue Mar 31 2020 08:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47067 * 2 1 4 4 C 1.53006 * 109.47476 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47375 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.46966 * 180.02562 * 5 4 3 7 7 H 1.08994 * 109.47032 * 55.00411 * 6 5 4 8 8 C 1.52997 * 109.46955 * 175.00249 * 6 5 4 9 9 N 1.46499 * 109.47127 * 295.00171 * 6 5 4 10 10 C 1.34778 * 119.99985 * 155.00162 * 9 6 5 11 11 O 1.21279 * 119.99918 * 0.02562 * 10 9 6 12 12 C 1.50696 * 120.00123 * 179.97438 * 10 9 6 13 13 C 1.50699 * 109.47446 * 180.02562 * 12 10 9 14 14 C 1.37640 * 120.12560 * 264.98189 * 13 12 10 15 15 C 1.38615 * 120.24508 * 179.97438 * 14 13 12 16 16 C 1.38653 * 120.50505 * 0.03574 * 15 14 13 17 17 C 1.37602 * 120.24670 * 359.68187 * 16 15 14 18 18 C 1.40697 * 120.13087 * 84.99821 * 13 12 10 19 19 C 1.41400 * 120.24037 * 359.97438 * 18 13 12 20 20 H 1.07995 * 120.00005 * 26.26997 * 19 18 13 21 21 C 1.39948 * 119.99664 * 206.27031 * 19 18 13 22 22 N 1.30820 * 120.00409 * 16.45094 * 21 19 18 23 23 Si 1.86804 * 119.99707 * 196.45301 * 21 19 18 24 24 H 1.48496 * 109.47268 * 265.18600 * 23 21 19 25 25 H 1.48501 * 109.46902 * 25.18601 * 23 21 19 26 26 H 1.48505 * 109.47086 * 145.18489 * 23 21 19 27 27 H 1.08997 * 109.47004 * 60.00234 * 1 2 3 28 28 H 1.09003 * 109.46672 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47260 * 299.99768 * 1 2 3 30 30 H 1.09000 * 109.47477 * 239.99842 * 2 1 3 31 31 H 1.09007 * 109.47455 * 119.99610 * 2 1 3 32 32 H 1.08996 * 109.47428 * 59.99989 * 3 2 1 33 33 H 1.09006 * 109.46941 * 299.99625 * 3 2 1 34 34 H 1.09009 * 109.46461 * 59.99638 * 4 3 2 35 35 H 1.08997 * 109.46839 * 299.99915 * 4 3 2 36 36 H 1.09000 * 109.46845 * 59.99878 * 5 4 3 37 37 H 1.08998 * 109.47098 * 300.00431 * 5 4 3 38 38 H 1.09002 * 109.47447 * 60.00129 * 8 6 5 39 39 H 1.09006 * 109.47521 * 180.02562 * 8 6 5 40 40 H 1.08999 * 109.47037 * 299.99911 * 8 6 5 41 41 H 0.97002 * 120.00021 * 334.99637 * 9 6 5 42 42 H 1.09003 * 109.47096 * 59.99748 * 12 10 9 43 43 H 1.09006 * 109.46769 * 300.00011 * 12 10 9 44 44 H 1.07998 * 119.87799 * 0.02562 * 14 13 12 45 45 H 1.08003 * 119.74331 * 180.02562 * 15 14 13 46 46 H 1.07998 * 119.87893 * 179.97438 * 16 15 14 47 47 H 1.08000 * 120.13026 * 180.30283 * 17 16 15 48 48 H 0.96999 * 120.00009 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0800 2.8851 0.0000 6 6 5.6099 2.8851 0.0000 7 1 5.9732 2.2953 -0.8415 8 6 6.1199 4.3220 -0.1263 9 7 6.0983 2.3019 1.2520 10 6 7.3203 1.7354 1.3001 11 8 8.0158 1.7088 0.3069 12 6 7.8229 1.1360 2.5881 13 6 9.2046 0.5734 2.3750 14 6 9.3689 -0.7598 2.0748 15 6 10.6386 -1.2797 1.8777 16 6 11.7563 -0.4658 1.9810 17 6 11.6154 0.8712 2.2745 18 6 10.3316 1.4088 2.4824 19 6 10.1749 2.7800 2.7902 20 1 9.3097 3.1137 3.3437 21 6 11.1410 3.7045 2.3775 22 7 12.0054 3.3780 1.4514 23 14 11.1963 5.4049 3.1490 24 1 10.4306 6.3567 2.3047 25 1 10.5950 5.3525 4.5059 26 1 12.6072 5.8570 3.2499 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 1.6766 1.9563 0.8899 33 1 1.6766 1.9563 -0.8901 34 1 3.9337 0.9285 -0.8892 35 1 3.9329 0.9289 0.8909 36 1 3.7162 3.3994 0.8895 37 1 3.7169 3.3984 -0.8904 38 1 5.7566 4.9118 0.7153 39 1 7.2099 4.3221 -0.1268 40 1 5.7565 4.7559 -1.0579 41 1 5.5422 2.3235 2.0465 42 1 7.1503 0.3386 2.9046 43 1 7.8596 1.9071 3.3576 44 1 8.5053 -1.4030 1.9916 45 1 10.7582 -2.3270 1.6421 46 1 12.7409 -0.8816 1.8259 47 1 12.4870 1.5045 2.3496 48 1 12.6748 4.0190 1.1651 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776735597.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:55:26 Heat of formation + Delta-G solvation = -75.849379 kcal Electronic energy + Delta-G solvation = -24778.807589 eV Core-core repulsion = 21409.969507 eV Total energy + Delta-G solvation = -3368.838082 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.82089 -39.25504 -37.77832 -35.95767 -35.46351 -33.62746 -32.70295 -31.35429 -31.05066 -28.36337 -27.27292 -26.80901 -23.60116 -22.82210 -22.38280 -21.78671 -21.43514 -20.91042 -19.06297 -17.80563 -17.32937 -17.13956 -16.47397 -16.19694 -16.07168 -15.43365 -15.19187 -14.94594 -14.72368 -14.63783 -14.39296 -14.36955 -13.86609 -13.56491 -13.40370 -13.28023 -13.00758 -12.87354 -12.82012 -12.75597 -12.58039 -12.49303 -12.46939 -12.10672 -12.02409 -11.75909 -11.66473 -11.32103 -11.31433 -11.26039 -11.16300 -10.99992 -10.61518 -9.88995 -9.20907 -9.15551 -8.55954 -6.24800 1.01248 1.14464 1.35170 1.48008 1.53948 1.98048 2.20755 2.49210 2.82697 3.66513 3.77780 4.04729 4.05640 4.18587 4.24815 4.33255 4.35496 4.42158 4.49379 4.52976 4.63297 4.67125 4.74419 4.78134 4.79071 4.81063 4.87441 4.97531 4.99442 5.05326 5.10663 5.12385 5.24254 5.26410 5.29569 5.32804 5.37777 5.42145 5.49931 5.56608 5.57358 5.77022 5.80976 6.05666 6.15906 6.22917 6.45253 6.74716 6.84030 7.01065 7.13966 7.61372 8.41647 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.014646 B = 0.003711 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.376852 B = 7543.137697 C = 8947.171639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.129 4.129 3 C -0.113 4.113 4 C -0.119 4.119 5 C -0.111 4.111 6 C 0.142 3.858 7 H 0.053 0.947 8 C -0.160 4.160 9 N -0.718 5.718 10 C 0.516 3.484 11 O -0.575 6.575 12 C -0.069 4.069 13 C -0.183 4.183 14 C -0.093 4.093 15 C -0.244 4.244 16 C -0.118 4.118 17 C -0.196 4.196 18 C 0.095 3.905 19 C -0.482 4.482 20 H 0.082 0.918 21 C 0.029 3.971 22 N -0.833 5.833 23 Si 0.974 3.026 24 H -0.270 1.270 25 H -0.248 1.248 26 H -0.270 1.270 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.046 0.954 35 H 0.060 0.940 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.071 0.929 39 H 0.018 0.982 40 H 0.079 0.921 41 H 0.411 0.589 42 H 0.112 0.888 43 H 0.098 0.902 44 H 0.116 0.884 45 H 0.114 0.886 46 H 0.103 0.897 47 H 0.095 0.905 48 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.458 0.380 0.695 20.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.167 4.167 3 C -0.150 4.150 4 C -0.156 4.156 5 C -0.149 4.149 6 C 0.037 3.963 7 H 0.071 0.929 8 C -0.218 4.218 9 N -0.373 5.373 10 C 0.304 3.696 11 O -0.453 6.453 12 C -0.109 4.109 13 C -0.185 4.185 14 C -0.111 4.111 15 C -0.264 4.264 16 C -0.136 4.136 17 C -0.216 4.216 18 C 0.093 3.907 19 C -0.512 4.512 20 H 0.100 0.900 21 C -0.184 4.184 22 N -0.459 5.459 23 Si 0.795 3.205 24 H -0.195 1.195 25 H -0.171 1.171 26 H -0.195 1.195 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.090 0.910 39 H 0.037 0.963 40 H 0.098 0.902 41 H 0.248 0.752 42 H 0.130 0.870 43 H 0.116 0.884 44 H 0.134 0.866 45 H 0.132 0.868 46 H 0.122 0.878 47 H 0.114 0.886 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -19.781 0.454 -0.165 19.787 hybrid contribution 0.743 0.651 0.134 0.997 sum -19.038 1.104 -0.030 19.070 Atomic orbital electron populations 1.21767 0.95262 1.01782 1.02048 1.21559 0.96371 0.97101 1.01654 1.21572 0.94163 0.96730 1.02557 1.21585 0.96066 0.96294 1.01705 1.21811 0.90906 0.97786 1.04349 1.20929 0.95288 0.93338 0.86756 0.92854 1.22143 0.99719 0.96846 1.03107 1.45975 1.17170 1.60085 1.14034 1.21087 0.80864 0.77059 0.90582 1.90684 1.57038 1.58872 1.38714 1.20304 0.94355 1.01353 0.94855 1.19491 0.93657 0.94130 1.11238 1.20732 0.96616 0.94652 0.99108 1.20705 0.92893 0.99095 1.13661 1.20941 0.97885 0.94174 1.00633 1.21301 0.97751 0.94225 1.08309 1.17756 0.91180 0.93503 0.88259 1.19689 1.06987 0.92037 1.32439 0.90001 1.26774 0.93677 1.04803 0.93170 1.69944 1.15383 1.38047 1.22549 0.85323 0.78622 0.76626 0.79937 1.19484 1.17119 1.19484 0.92570 0.92711 0.92331 0.92817 0.92329 0.91107 0.91673 0.93507 0.92145 0.89530 0.89367 0.91031 0.96300 0.90228 0.75193 0.86963 0.88393 0.86617 0.86815 0.87847 0.88650 0.90812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.91 71.98 0.71 -1.07 16 2 C -0.13 -1.82 5.93 30.59 0.18 -1.63 16 3 C -0.11 -1.52 5.21 30.60 0.16 -1.36 16 4 C -0.12 -2.03 5.10 30.60 0.16 -1.88 16 5 C -0.11 -1.86 4.75 30.59 0.15 -1.72 16 6 C 0.14 3.74 2.57 44.99 0.12 3.86 16 7 H 0.05 1.75 7.58 -2.39 -0.02 1.74 16 8 C -0.16 -4.40 9.48 71.98 0.68 -3.72 16 9 N -0.72 -20.41 4.53 -442.55 -2.00 -22.42 16 10 C 0.52 20.66 7.79 87.66 0.68 21.34 16 11 O -0.58 -30.11 15.70 -3.03 -0.05 -30.16 16 12 C -0.07 -2.64 5.35 29.10 0.16 -2.48 16 13 C -0.18 -8.93 4.43 -19.41 -0.09 -9.02 16 14 C -0.09 -4.27 9.66 22.22 0.21 -4.05 16 15 C -0.24 -11.41 10.05 22.46 0.23 -11.19 16 16 C -0.12 -5.98 10.02 22.22 0.22 -5.75 16 17 C -0.20 -11.12 8.68 22.73 0.20 -10.92 16 18 C 0.10 5.30 5.56 -21.29 -0.12 5.19 16 19 C -0.48 -26.23 8.46 23.46 0.20 -26.03 16 20 H 0.08 4.14 6.37 -2.91 -0.02 4.12 16 21 C 0.03 1.55 5.16 85.26 0.44 1.99 16 22 N -0.83 -47.24 10.97 21.83 0.24 -47.00 16 23 Si 0.97 39.89 29.59 68.60 2.03 41.92 16 24 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 25 H -0.25 -9.52 7.11 99.48 0.71 -8.81 16 26 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 27 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.06 0.82 8.14 -2.38 -0.02 0.81 16 34 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 35 H 0.06 1.10 7.75 -2.39 -0.02 1.08 16 36 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.02 0.68 8.14 -2.38 -0.02 0.66 16 40 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.41 8.49 8.60 -92.71 -0.80 7.69 16 42 H 0.11 3.32 8.05 -2.39 -0.02 3.30 16 43 H 0.10 3.57 6.49 -2.38 -0.02 3.56 16 44 H 0.12 4.47 8.06 -2.91 -0.02 4.45 16 45 H 0.11 4.55 8.06 -2.91 -0.02 4.53 16 46 H 0.10 4.67 8.06 -2.91 -0.02 4.65 16 47 H 0.10 5.66 6.22 -2.91 -0.02 5.64 16 48 H 0.28 14.61 8.30 -92.71 -0.77 13.84 16 Total: -1.00 -72.55 389.63 4.63 -67.92 By element: Atomic # 1 Polarization: 38.06 SS G_CDS: 0.12 Total: 38.18 kcal Atomic # 6 Polarization: -52.73 SS G_CDS: 4.29 Total: -48.44 kcal Atomic # 7 Polarization: -67.65 SS G_CDS: -1.77 Total: -69.42 kcal Atomic # 8 Polarization: -30.11 SS G_CDS: -0.05 Total: -30.16 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 2.03 Total: 41.92 kcal Total: -72.55 4.63 -67.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776735597.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.929 kcal (2) G-P(sol) polarization free energy of solvation -72.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds