Wall clock time and date at job start Tue Mar 31 2020 08:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47544 * 2 1 4 4 C 1.53000 * 109.47530 * 120.00001 * 2 1 3 5 5 N 1.46494 * 109.46910 * 299.70491 * 4 2 1 6 6 C 1.34778 * 120.00289 * 154.99773 * 5 4 2 7 7 O 1.21288 * 119.99927 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00447 * 179.97438 * 6 5 4 9 9 C 1.50698 * 109.47217 * 180.02562 * 8 6 5 10 10 C 1.37642 * 120.12866 * 265.30050 * 9 8 6 11 11 C 1.38610 * 120.25092 * 180.32391 * 10 9 8 12 12 C 1.38659 * 120.49804 * 359.66912 * 11 10 9 13 13 C 1.37590 * 120.25186 * 0.02562 * 12 11 10 14 14 C 1.40703 * 120.13075 * 84.99843 * 9 8 6 15 15 C 1.41394 * 120.24080 * 359.97438 * 14 9 8 16 16 H 1.08000 * 120.00030 * 28.39032 * 15 14 9 17 17 C 1.39946 * 120.00149 * 208.38736 * 15 14 9 18 18 N 1.30816 * 120.00485 * 198.84079 * 17 15 14 19 19 Si 1.86807 * 119.99447 * 18.84431 * 17 15 14 20 20 H 1.48498 * 109.46806 * 269.99589 * 19 17 15 21 21 H 1.48494 * 109.47362 * 29.99759 * 19 17 15 22 22 H 1.48496 * 109.46701 * 149.99991 * 19 17 15 23 23 C 1.53001 * 109.47398 * 179.70100 * 4 2 1 24 24 C 1.53000 * 109.46833 * 183.08168 * 23 4 2 25 25 C 1.52997 * 109.47175 * 303.07986 * 23 4 2 26 26 H 1.09002 * 109.46717 * 300.00006 * 1 2 3 27 27 H 1.09004 * 109.47145 * 59.99345 * 1 2 3 28 28 H 1.08992 * 109.47390 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47239 * 239.99956 * 2 1 3 30 30 H 1.09000 * 109.47393 * 183.45627 * 3 2 1 31 31 H 1.09010 * 109.46981 * 303.45728 * 3 2 1 32 32 H 1.08999 * 109.47460 * 63.45540 * 3 2 1 33 33 H 1.09004 * 109.46609 * 59.70027 * 4 2 1 34 34 H 0.96998 * 120.00063 * 334.99690 * 5 4 2 35 35 H 1.08998 * 109.47451 * 59.99309 * 8 6 5 36 36 H 1.09003 * 109.46875 * 299.99927 * 8 6 5 37 37 H 1.08000 * 119.87485 * 0.02562 * 10 9 8 38 38 H 1.07996 * 119.75453 * 179.69987 * 11 10 9 39 39 H 1.08002 * 119.87462 * 180.02562 * 12 11 10 40 40 H 1.08000 * 120.13282 * 180.02562 * 13 12 11 41 41 H 0.97006 * 120.00164 * 354.91496 * 18 17 15 42 42 H 1.08997 * 109.47093 * 63.08169 * 23 4 2 43 43 H 1.08997 * 109.47280 * 60.00115 * 24 23 4 44 44 H 1.09002 * 109.47148 * 179.97438 * 24 23 4 45 45 H 1.09002 * 109.47355 * 299.99991 * 24 23 4 46 46 H 1.09002 * 109.47234 * 64.55357 * 25 23 4 47 47 H 1.08996 * 109.47505 * 184.56259 * 25 23 4 48 48 H 1.09007 * 109.47339 * 304.56126 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.5576 -0.0265 2.4453 6 6 1.4288 -0.6963 3.6078 7 8 1.7120 -1.8743 3.6635 8 6 0.9331 0.0184 4.8384 9 6 0.8816 -0.9476 5.9939 10 6 -0.2912 -1.6016 6.2959 11 6 -0.3431 -2.4856 7.3623 12 6 0.7847 -2.7267 8.1321 13 6 1.9695 -2.0889 7.8446 14 6 2.0339 -1.1892 6.7643 15 6 3.2461 -0.5283 6.4591 16 1 3.2276 0.4445 5.9904 17 6 4.4698 -1.1347 6.7645 18 7 5.5583 -0.4125 6.8345 19 14 4.5489 -2.9756 7.0720 20 1 4.3376 -3.2455 8.5169 21 1 3.4914 -3.6554 6.2817 22 1 5.8806 -3.4891 6.6621 23 6 3.5700 -0.7277 1.2454 24 6 4.0796 -1.5152 2.4542 25 6 4.0740 -1.3852 -0.0409 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5140 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1283 1.4431 -0.0620 31 1 1.6270 1.9739 -0.8575 32 1 1.7282 1.9382 0.9193 33 1 1.6723 -1.7474 1.2518 34 1 1.3307 0.9155 2.4007 35 1 -0.0648 0.4150 4.6511 36 1 1.6101 0.8378 5.0801 37 1 -1.1756 -1.4218 5.7027 38 1 -1.2688 -2.9908 7.5951 39 1 0.7330 -3.4178 8.9604 40 1 2.8468 -2.2784 8.4452 41 1 5.5314 0.5291 6.6030 42 1 3.9378 0.2969 1.2980 43 1 3.7118 -2.5399 2.4017 44 1 5.1696 -1.5202 2.4513 45 1 3.7205 -1.0468 3.3706 46 1 3.7793 -0.7798 -0.8980 47 1 5.1607 -1.4632 -0.0074 48 1 3.6410 -2.3813 -0.1336 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777037056.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:52:55 Heat of formation + Delta-G solvation = -47.526709 kcal Electronic energy + Delta-G solvation = -26368.705900 eV Core-core repulsion = 23001.095980 eV Total energy + Delta-G solvation = -3367.609919 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.90423 -38.07284 -36.85726 -33.63608 -33.57511 -32.61729 -31.63750 -30.09058 -27.44282 -27.23510 -26.67374 -25.45578 -24.34605 -21.41101 -20.95976 -20.55442 -19.36252 -19.02162 -18.03529 -16.53981 -15.95372 -15.30007 -15.26434 -14.67151 -14.53728 -14.13871 -14.08241 -13.67557 -13.39743 -13.19759 -12.82817 -12.55436 -12.44364 -12.30393 -12.15585 -12.05786 -11.85976 -11.79300 -11.58554 -11.26557 -11.19143 -11.04236 -10.89115 -10.73564 -10.62905 -10.27692 -10.26420 -10.18380 -10.09288 -9.66127 -9.21755 -9.03515 -8.89146 -8.47359 -7.60859 -7.52575 -7.13067 -4.43665 2.65618 2.81141 3.29797 3.43592 3.47617 3.69684 3.76533 4.13543 4.63942 4.66699 4.82403 4.86469 5.21067 5.28356 5.34742 5.45264 5.50332 5.52450 5.62897 5.70720 5.73091 5.85664 5.87333 5.91509 5.94704 5.98732 6.06743 6.13148 6.14520 6.21722 6.24291 6.28136 6.29293 6.32896 6.49319 6.60729 6.68473 6.81487 6.98268 7.07780 7.12932 7.42225 7.57203 7.72956 7.78009 7.91681 8.05621 8.08397 8.46707 8.66947 8.86816 8.99055 10.11926 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.014901 B = 0.005624 C = 0.004610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.606426 B = 4977.793383 C = 6071.699493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.105 4.105 3 C -0.150 4.150 4 C 0.157 3.843 5 N -0.738 5.738 6 C 0.518 3.482 7 O -0.512 6.512 8 C -0.072 4.072 9 C -0.169 4.169 10 C -0.068 4.068 11 C -0.246 4.246 12 C -0.076 4.076 13 C -0.246 4.246 14 C 0.116 3.884 15 C -0.511 4.511 16 H 0.074 0.926 17 C 0.050 3.950 18 N -0.822 5.822 19 Si 1.067 2.933 20 H -0.280 1.280 21 H -0.257 1.257 22 H -0.293 1.293 23 C -0.106 4.106 24 C -0.143 4.143 25 C -0.145 4.145 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.083 0.917 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.084 0.916 34 H 0.391 0.609 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.104 0.896 41 H 0.283 0.717 42 H 0.068 0.932 43 H 0.057 0.943 44 H 0.040 0.960 45 H 0.072 0.928 46 H 0.052 0.948 47 H 0.053 0.947 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.861 3.283 -12.868 14.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.124 4.124 3 C -0.207 4.207 4 C 0.052 3.948 5 N -0.392 5.392 6 C 0.305 3.695 7 O -0.385 6.385 8 C -0.112 4.112 9 C -0.171 4.171 10 C -0.087 4.087 11 C -0.266 4.266 12 C -0.095 4.095 13 C -0.265 4.265 14 C 0.113 3.887 15 C -0.539 4.539 16 H 0.092 0.908 17 C -0.169 4.169 18 N -0.445 5.445 19 Si 0.894 3.106 20 H -0.207 1.207 21 H -0.182 1.182 22 H -0.221 1.221 23 C -0.125 4.125 24 C -0.200 4.200 25 C -0.203 4.203 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.101 0.899 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.102 0.898 34 H 0.226 0.774 35 H 0.092 0.908 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.121 0.879 41 H 0.094 0.906 42 H 0.086 0.914 43 H 0.076 0.924 44 H 0.059 0.941 45 H 0.091 0.909 46 H 0.071 0.929 47 H 0.072 0.928 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.562 1.270 -12.395 13.269 hybrid contribution -1.023 1.890 -0.436 2.193 sum -5.585 3.160 -12.831 14.346 Atomic orbital electron populations 1.21815 0.94985 1.01934 1.01570 1.21453 0.96028 0.96750 0.98177 1.21890 1.01510 0.95777 1.01510 1.20932 0.93031 0.97011 0.83808 1.46194 1.69775 1.13501 1.09764 1.20866 0.77003 0.87833 0.83776 1.90689 1.47414 1.16067 1.84317 1.20273 1.00717 0.98571 0.91667 1.19011 0.95098 1.04651 0.98317 1.20407 0.95856 0.96156 0.96235 1.20307 0.97640 1.06813 1.01801 1.20593 0.93490 0.97672 0.97714 1.21122 0.97487 1.06435 1.01427 1.17491 0.92676 0.89567 0.88970 1.20482 0.91372 1.04586 1.37509 0.90806 1.27086 0.91765 1.07516 0.90498 1.70567 1.31836 1.10275 1.31786 0.83695 0.76058 0.73232 0.77642 1.20711 1.18164 1.22086 1.21562 0.95066 1.00014 0.95880 1.21897 0.99270 1.00743 0.98088 1.21870 1.00969 1.00594 0.96855 0.92447 0.92910 0.92694 0.89918 0.92092 0.92742 0.92719 0.89834 0.77420 0.90809 0.89204 0.89334 0.89135 0.89005 0.87877 0.90610 0.91406 0.92439 0.94121 0.90927 0.92854 0.92769 0.92710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.04 37.15 0.34 -1.06 16 2 C -0.11 -1.05 2.35 -90.62 -0.21 -1.26 16 3 C -0.15 -1.34 8.63 37.16 0.32 -1.02 16 4 C 0.16 2.11 1.58 -67.93 -0.11 2.00 16 5 N -0.74 -10.72 4.24 -53.81 -0.23 -10.95 16 6 C 0.52 9.88 6.30 -10.99 -0.07 9.81 16 7 O -0.51 -11.87 13.17 5.55 0.07 -11.80 16 8 C -0.07 -1.38 5.36 -29.04 -0.16 -1.54 16 9 C -0.17 -3.91 4.43 -103.91 -0.46 -4.38 16 10 C -0.07 -1.49 9.66 -39.66 -0.38 -1.88 16 11 C -0.25 -5.39 10.05 -39.29 -0.39 -5.78 16 12 C -0.08 -1.74 10.02 -39.66 -0.40 -2.14 16 13 C -0.25 -6.19 7.32 -38.88 -0.28 -6.47 16 14 C 0.12 2.98 5.13 -106.82 -0.55 2.43 16 15 C -0.51 -13.55 8.80 -37.74 -0.33 -13.88 16 16 H 0.07 1.97 6.58 -52.49 -0.35 1.62 16 17 C 0.05 1.35 5.40 -17.34 -0.09 1.26 16 18 N -0.82 -22.36 13.65 55.55 0.76 -21.61 16 19 Si 1.07 26.19 24.95 -169.99 -4.24 21.95 16 20 H -0.28 -6.50 6.42 56.52 0.36 -6.14 16 21 H -0.26 -6.59 7.07 56.52 0.40 -6.19 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 C -0.11 -1.49 2.27 -90.62 -0.21 -1.69 16 24 C -0.14 -2.64 7.76 37.16 0.29 -2.36 16 25 C -0.15 -1.69 8.61 37.16 0.32 -1.37 16 26 H 0.06 0.57 7.46 -51.93 -0.39 0.18 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.77 6.46 -51.93 -0.34 0.43 16 30 H 0.06 0.56 6.70 -51.93 -0.35 0.22 16 31 H 0.05 0.42 8.14 -51.92 -0.42 0.00 16 32 H 0.05 0.49 6.38 -51.93 -0.33 0.15 16 33 H 0.08 1.32 7.58 -51.93 -0.39 0.92 16 34 H 0.39 4.69 6.60 -40.82 -0.27 4.42 16 35 H 0.07 1.17 8.06 -51.93 -0.42 0.75 16 36 H 0.09 1.72 6.50 -51.93 -0.34 1.38 16 37 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 38 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 39 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 40 H 0.10 2.59 4.47 -52.49 -0.23 2.36 16 41 H 0.28 7.44 8.73 -40.82 -0.36 7.09 16 42 H 0.07 0.94 6.68 -51.93 -0.35 0.59 16 43 H 0.06 1.12 7.73 -51.93 -0.40 0.72 16 44 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.07 1.60 5.69 -51.93 -0.30 1.30 16 46 H 0.05 0.51 6.63 -51.93 -0.34 0.17 16 47 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 364.61 15.07 5.49 5.49 Total: -1.00 -29.71 364.61 -8.31 -38.02 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -7.79 Total: 8.21 kcal Atomic # 6 Polarization: -26.94 SS G_CDS: -2.38 Total: -29.32 kcal Atomic # 7 Polarization: -33.09 SS G_CDS: 0.53 Total: -32.56 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.07 Total: -11.80 kcal Atomic # 14 Polarization: 26.19 SS G_CDS: -4.24 Total: 21.95 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.71 -8.31 -38.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777037056.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.507 kcal (2) G-P(sol) polarization free energy of solvation -29.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds