Wall clock time and date at job start Tue Mar 31 2020 08:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47544 * 2 1 4 4 C 1.53000 * 109.47530 * 120.00001 * 2 1 3 5 5 N 1.46494 * 109.46910 * 299.70491 * 4 2 1 6 6 C 1.34778 * 120.00289 * 154.99773 * 5 4 2 7 7 O 1.21288 * 119.99927 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00447 * 179.97438 * 6 5 4 9 9 C 1.50698 * 109.47217 * 180.02562 * 8 6 5 10 10 C 1.37642 * 120.12866 * 265.30050 * 9 8 6 11 11 C 1.38610 * 120.25092 * 180.32391 * 10 9 8 12 12 C 1.38659 * 120.49804 * 359.66912 * 11 10 9 13 13 C 1.37590 * 120.25186 * 0.02562 * 12 11 10 14 14 C 1.40703 * 120.13075 * 84.99843 * 9 8 6 15 15 C 1.41394 * 120.24080 * 359.97438 * 14 9 8 16 16 H 1.08000 * 120.00030 * 28.39032 * 15 14 9 17 17 C 1.39946 * 120.00149 * 208.38736 * 15 14 9 18 18 N 1.30816 * 120.00485 * 198.84079 * 17 15 14 19 19 Si 1.86807 * 119.99447 * 18.84431 * 17 15 14 20 20 H 1.48498 * 109.46806 * 269.99589 * 19 17 15 21 21 H 1.48494 * 109.47362 * 29.99759 * 19 17 15 22 22 H 1.48496 * 109.46701 * 149.99991 * 19 17 15 23 23 C 1.53001 * 109.47398 * 179.70100 * 4 2 1 24 24 C 1.53000 * 109.46833 * 183.08168 * 23 4 2 25 25 C 1.52997 * 109.47175 * 303.07986 * 23 4 2 26 26 H 1.09002 * 109.46717 * 300.00006 * 1 2 3 27 27 H 1.09004 * 109.47145 * 59.99345 * 1 2 3 28 28 H 1.08992 * 109.47390 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47239 * 239.99956 * 2 1 3 30 30 H 1.09000 * 109.47393 * 183.45627 * 3 2 1 31 31 H 1.09010 * 109.46981 * 303.45728 * 3 2 1 32 32 H 1.08999 * 109.47460 * 63.45540 * 3 2 1 33 33 H 1.09004 * 109.46609 * 59.70027 * 4 2 1 34 34 H 0.96998 * 120.00063 * 334.99690 * 5 4 2 35 35 H 1.08998 * 109.47451 * 59.99309 * 8 6 5 36 36 H 1.09003 * 109.46875 * 299.99927 * 8 6 5 37 37 H 1.08000 * 119.87485 * 0.02562 * 10 9 8 38 38 H 1.07996 * 119.75453 * 179.69987 * 11 10 9 39 39 H 1.08002 * 119.87462 * 180.02562 * 12 11 10 40 40 H 1.08000 * 120.13282 * 180.02562 * 13 12 11 41 41 H 0.97006 * 120.00164 * 354.91496 * 18 17 15 42 42 H 1.08997 * 109.47093 * 63.08169 * 23 4 2 43 43 H 1.08997 * 109.47280 * 60.00115 * 24 23 4 44 44 H 1.09002 * 109.47148 * 179.97438 * 24 23 4 45 45 H 1.09002 * 109.47355 * 299.99991 * 24 23 4 46 46 H 1.09002 * 109.47234 * 64.55357 * 25 23 4 47 47 H 1.08996 * 109.47505 * 184.56259 * 25 23 4 48 48 H 1.09007 * 109.47339 * 304.56126 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.5576 -0.0265 2.4453 6 6 1.4288 -0.6963 3.6078 7 8 1.7120 -1.8743 3.6635 8 6 0.9331 0.0184 4.8384 9 6 0.8816 -0.9476 5.9939 10 6 -0.2912 -1.6016 6.2959 11 6 -0.3431 -2.4856 7.3623 12 6 0.7847 -2.7267 8.1321 13 6 1.9695 -2.0889 7.8446 14 6 2.0339 -1.1892 6.7643 15 6 3.2461 -0.5283 6.4591 16 1 3.2276 0.4445 5.9904 17 6 4.4698 -1.1347 6.7645 18 7 5.5583 -0.4125 6.8345 19 14 4.5489 -2.9756 7.0720 20 1 4.3376 -3.2455 8.5169 21 1 3.4914 -3.6554 6.2817 22 1 5.8806 -3.4891 6.6621 23 6 3.5700 -0.7277 1.2454 24 6 4.0796 -1.5152 2.4542 25 6 4.0740 -1.3852 -0.0409 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5140 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1283 1.4431 -0.0620 31 1 1.6270 1.9739 -0.8575 32 1 1.7282 1.9382 0.9193 33 1 1.6723 -1.7474 1.2518 34 1 1.3307 0.9155 2.4007 35 1 -0.0648 0.4150 4.6511 36 1 1.6101 0.8378 5.0801 37 1 -1.1756 -1.4218 5.7027 38 1 -1.2688 -2.9908 7.5951 39 1 0.7330 -3.4178 8.9604 40 1 2.8468 -2.2784 8.4452 41 1 5.5314 0.5291 6.6030 42 1 3.9378 0.2969 1.2980 43 1 3.7118 -2.5399 2.4017 44 1 5.1696 -1.5202 2.4513 45 1 3.7205 -1.0468 3.3706 46 1 3.7793 -0.7798 -0.8980 47 1 5.1607 -1.4632 -0.0074 48 1 3.6410 -2.3813 -0.1336 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777037056.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:52:54 Heat of formation + Delta-G solvation = -64.025104 kcal Electronic energy + Delta-G solvation = -26369.421324 eV Core-core repulsion = 23001.095980 eV Total energy + Delta-G solvation = -3368.325343 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.26325 -39.70212 -38.28722 -35.58687 -34.70809 -33.93667 -33.25937 -31.97885 -28.89601 -28.18843 -27.82138 -26.84324 -26.06460 -23.23182 -22.23344 -21.92881 -20.96396 -20.18875 -19.97514 -17.93801 -17.41792 -16.89348 -16.73272 -16.15055 -15.83124 -15.70616 -15.49965 -15.17187 -14.83761 -14.57156 -14.35109 -13.95575 -13.85005 -13.64354 -13.60654 -13.21569 -13.09595 -13.05705 -13.03751 -12.78705 -12.59705 -12.43951 -12.16711 -12.14670 -11.97801 -11.94204 -11.60211 -11.57416 -11.43275 -11.28715 -11.11480 -10.84353 -10.60540 -9.79323 -9.54945 -9.32597 -9.13057 -6.44858 0.83575 0.91933 1.29736 1.49931 1.70727 1.94067 2.14520 2.45199 2.72681 3.55762 3.65816 3.87469 4.02542 4.09976 4.13136 4.27086 4.29324 4.38546 4.41097 4.49092 4.56663 4.62739 4.70018 4.72694 4.77274 4.78508 4.88652 4.92843 4.98303 4.99987 5.04310 5.06160 5.09285 5.20619 5.27341 5.27805 5.33108 5.45473 5.49999 5.52906 5.53878 5.63513 5.77441 5.85429 5.92173 6.04952 6.20949 6.51078 6.73847 6.79076 6.91447 7.56656 8.08431 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.014901 B = 0.005624 C = 0.004610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.606426 B = 4977.793383 C = 6071.699493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 C -0.149 4.149 4 C 0.158 3.842 5 N -0.719 5.719 6 C 0.519 3.481 7 O -0.560 6.560 8 C -0.074 4.074 9 C -0.172 4.172 10 C -0.080 4.080 11 C -0.233 4.233 12 C -0.089 4.089 13 C -0.268 4.268 14 C 0.087 3.913 15 C -0.526 4.526 16 H 0.059 0.941 17 C 0.021 3.979 18 N -0.850 5.850 19 Si 1.092 2.908 20 H -0.260 1.260 21 H -0.279 1.279 22 H -0.288 1.288 23 C -0.100 4.100 24 C -0.136 4.136 25 C -0.139 4.139 26 H 0.052 0.948 27 H 0.073 0.927 28 H 0.044 0.956 29 H 0.098 0.902 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.407 0.593 35 H 0.113 0.887 36 H 0.084 0.916 37 H 0.123 0.877 38 H 0.126 0.874 39 H 0.122 0.878 40 H 0.095 0.905 41 H 0.278 0.722 42 H 0.075 0.925 43 H 0.037 0.963 44 H 0.036 0.964 45 H 0.033 0.967 46 H 0.082 0.918 47 H 0.054 0.946 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.303 3.708 -14.644 17.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 C -0.207 4.207 4 C 0.053 3.947 5 N -0.373 5.373 6 C 0.306 3.694 7 O -0.438 6.438 8 C -0.113 4.113 9 C -0.174 4.174 10 C -0.098 4.098 11 C -0.252 4.252 12 C -0.107 4.107 13 C -0.287 4.287 14 C 0.085 3.915 15 C -0.556 4.556 16 H 0.077 0.923 17 C -0.193 4.193 18 N -0.476 5.476 19 Si 0.917 3.083 20 H -0.186 1.186 21 H -0.205 1.205 22 H -0.215 1.215 23 C -0.120 4.120 24 C -0.193 4.193 25 C -0.197 4.197 26 H 0.072 0.928 27 H 0.092 0.908 28 H 0.063 0.937 29 H 0.116 0.884 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.244 0.756 35 H 0.131 0.869 36 H 0.102 0.898 37 H 0.141 0.859 38 H 0.144 0.856 39 H 0.140 0.860 40 H 0.113 0.887 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.056 0.944 44 H 0.055 0.945 45 H 0.052 0.948 46 H 0.101 0.899 47 H 0.073 0.927 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.012 1.739 -14.181 15.915 hybrid contribution -0.510 1.726 0.096 1.802 sum -7.522 3.465 -14.085 16.340 Atomic orbital electron populations 1.21812 0.94364 1.01582 1.02436 1.21412 0.96453 0.97208 0.96304 1.21903 1.01478 0.94884 1.02404 1.21017 0.92515 0.96361 0.84821 1.46002 1.68224 1.14094 1.08990 1.20816 0.76552 0.87239 0.84781 1.90674 1.49776 1.18144 1.85158 1.20319 1.02868 0.97538 0.90617 1.19492 0.94680 1.04594 0.98624 1.20866 0.96565 0.95694 0.96655 1.20849 0.98537 1.05375 1.00441 1.20976 0.92914 0.97934 0.98871 1.21285 0.98457 1.07261 1.01692 1.17770 0.93377 0.90412 0.89979 1.20394 0.92084 1.04419 1.38677 0.92327 1.27665 0.91901 1.09107 0.90586 1.70601 1.32155 1.10119 1.34695 0.83324 0.75405 0.71201 0.78322 1.18588 1.20460 1.21493 1.21533 0.95553 0.99750 0.95124 1.21801 0.98895 0.99959 0.98676 1.21828 1.00950 1.00723 0.96204 0.92846 0.90789 0.93687 0.88421 0.92272 0.90711 0.92864 0.92255 0.75621 0.86875 0.89768 0.85919 0.85568 0.86048 0.88698 0.91176 0.90678 0.94418 0.94498 0.94754 0.89879 0.92702 0.92989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.04 71.98 0.65 -1.69 16 2 C -0.10 -1.63 2.35 -10.80 -0.03 -1.65 16 3 C -0.15 -2.16 8.63 71.98 0.62 -1.54 16 4 C 0.16 4.09 1.58 44.99 0.07 4.16 16 5 N -0.72 -20.37 4.24 -442.53 -1.88 -22.25 16 6 C 0.52 19.86 6.30 87.66 0.55 20.42 16 7 O -0.56 -26.77 13.17 -3.05 -0.04 -26.81 16 8 C -0.07 -2.77 5.36 29.10 0.16 -2.61 16 9 C -0.17 -7.88 4.43 -19.40 -0.09 -7.97 16 10 C -0.08 -3.29 9.66 22.22 0.21 -3.07 16 11 C -0.23 -9.46 10.05 22.46 0.23 -9.23 16 12 C -0.09 -3.90 10.02 22.22 0.22 -3.68 16 13 C -0.27 -13.55 7.32 22.73 0.17 -13.38 16 14 C 0.09 4.57 5.13 -21.29 -0.11 4.46 16 15 C -0.53 -29.22 8.80 23.46 0.21 -29.01 16 16 H 0.06 3.32 6.58 -2.91 -0.02 3.30 16 17 C 0.02 1.19 5.40 85.26 0.46 1.65 16 18 N -0.85 -48.57 13.65 21.83 0.30 -48.27 16 19 Si 1.09 55.03 24.95 68.60 1.71 56.74 16 20 H -0.26 -12.06 6.42 99.48 0.64 -11.42 16 21 H -0.28 -14.87 7.07 99.48 0.70 -14.17 16 22 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 23 C -0.10 -2.78 2.27 -10.79 -0.02 -2.80 16 24 C -0.14 -5.29 7.76 71.98 0.56 -4.74 16 25 C -0.14 -3.01 8.61 71.98 0.62 -2.39 16 26 H 0.05 0.90 7.46 -2.39 -0.02 0.88 16 27 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 28 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.10 1.45 6.46 -2.39 -0.02 1.43 16 30 H 0.06 0.90 6.70 -2.39 -0.02 0.89 16 31 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.05 0.79 6.38 -2.39 -0.02 0.77 16 33 H 0.06 1.87 7.58 -2.39 -0.02 1.86 16 34 H 0.41 9.05 6.60 -92.71 -0.61 8.44 16 35 H 0.11 3.27 8.06 -2.39 -0.02 3.25 16 36 H 0.08 3.26 6.50 -2.39 -0.02 3.25 16 37 H 0.12 4.19 8.06 -2.91 -0.02 4.16 16 38 H 0.13 4.22 8.06 -2.91 -0.02 4.19 16 39 H 0.12 4.51 8.06 -2.91 -0.02 4.49 16 40 H 0.10 4.85 4.47 -2.91 -0.01 4.84 16 41 H 0.28 15.49 8.73 -92.70 -0.81 14.68 16 42 H 0.07 1.99 6.68 -2.39 -0.02 1.98 16 43 H 0.04 1.56 7.73 -2.39 -0.02 1.54 16 44 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.03 1.58 5.69 -2.39 -0.01 1.57 16 46 H 0.08 1.32 6.63 -2.39 -0.02 1.30 16 47 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.05 1.15 8.14 -2.38 -0.02 1.14 16 Total: -1.00 -68.33 364.61 4.80 -63.53 By element: Atomic # 1 Polarization: 29.92 SS G_CDS: 0.23 Total: 30.15 kcal Atomic # 6 Polarization: -57.56 SS G_CDS: 4.48 Total: -53.08 kcal Atomic # 7 Polarization: -68.95 SS G_CDS: -1.58 Total: -70.52 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.04 Total: -26.81 kcal Atomic # 14 Polarization: 55.03 SS G_CDS: 1.71 Total: 56.74 kcal Total: -68.33 4.80 -63.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777037056.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.495 kcal (2) G-P(sol) polarization free energy of solvation -68.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds