Wall clock time and date at job start Tue Mar 31 2020 08:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47533 * 2 1 4 4 C 1.53005 * 109.46655 * 240.00079 * 2 1 3 5 5 C 1.52998 * 109.46924 * 120.00484 * 2 1 3 6 6 C 1.53001 * 109.47375 * 59.99832 * 5 2 1 7 7 C 1.52996 * 109.47010 * 179.97438 * 6 5 2 8 8 N 1.46507 * 109.47103 * 179.97438 * 7 6 5 9 9 C 1.34773 * 120.00266 * 180.02562 * 8 7 6 10 10 O 1.21282 * 119.99503 * 359.97438 * 9 8 7 11 11 C 1.50694 * 120.00092 * 180.02562 * 9 8 7 12 12 C 1.50707 * 109.47262 * 179.97438 * 11 9 8 13 13 C 1.37643 * 120.12639 * 265.30991 * 12 11 9 14 14 C 1.38615 * 120.24281 * 180.31829 * 13 12 11 15 15 C 1.38658 * 120.50051 * 359.66907 * 14 13 12 16 16 C 1.37593 * 120.25264 * 0.02562 * 15 14 13 17 17 C 1.40688 * 120.12508 * 84.99750 * 12 11 9 18 18 C 1.41401 * 120.24844 * 359.97438 * 17 12 11 19 19 H 1.07999 * 119.99289 * 334.28466 * 18 17 12 20 20 C 1.39937 * 120.00394 * 154.28925 * 18 17 12 21 21 N 1.30829 * 120.00181 * 334.60180 * 20 18 17 22 22 Si 1.86801 * 120.00083 * 154.60226 * 20 18 17 23 23 H 1.48505 * 109.47160 * 179.97438 * 22 20 18 24 24 H 1.48495 * 109.47100 * 300.00105 * 22 20 18 25 25 H 1.48502 * 109.47051 * 60.00179 * 22 20 18 26 26 H 1.09003 * 109.46707 * 300.00113 * 1 2 3 27 27 H 1.09004 * 109.46982 * 59.99504 * 1 2 3 28 28 H 1.08997 * 109.47446 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47132 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.46879 * 300.00332 * 3 2 1 31 31 H 1.09001 * 109.46727 * 60.00070 * 3 2 1 32 32 H 1.08997 * 109.47398 * 300.00280 * 4 2 1 33 33 H 1.09004 * 109.47085 * 60.00481 * 4 2 1 34 34 H 1.08998 * 109.47108 * 180.02562 * 4 2 1 35 35 H 1.09001 * 109.47080 * 299.99773 * 5 2 1 36 36 H 1.08998 * 109.46872 * 179.97438 * 5 2 1 37 37 H 1.08992 * 109.47153 * 59.99702 * 6 5 2 38 38 H 1.09003 * 109.46640 * 300.00124 * 6 5 2 39 39 H 1.09001 * 109.47212 * 60.00084 * 7 6 5 40 40 H 1.08991 * 109.47261 * 299.99917 * 7 6 5 41 41 H 0.97000 * 119.99705 * 0.02562 * 8 7 6 42 42 H 1.09001 * 109.46892 * 59.99768 * 11 9 8 43 43 H 1.08991 * 109.47294 * 299.99778 * 11 9 8 44 44 H 1.07998 * 119.87840 * 0.02562 * 13 12 11 45 45 H 1.07996 * 119.74749 * 179.68975 * 14 13 12 46 46 H 1.08000 * 119.87393 * 180.02562 * 15 14 13 47 47 H 1.07996 * 120.12941 * 180.02562 * 16 15 14 48 48 H 0.96998 * 119.99709 * 354.17607 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0400 -0.7214 1.2492 6 6 1.5299 -2.1638 1.2491 7 6 2.0404 -2.8853 2.4980 8 7 1.5516 -4.2664 2.4983 9 6 1.8770 -5.0963 3.5091 10 8 2.5750 -4.6999 4.4182 11 6 1.3746 -6.5170 3.5090 12 6 1.8774 -7.2277 4.7392 13 6 3.0305 -7.9771 4.6814 14 6 3.4915 -8.6371 5.8098 15 6 2.8023 -8.5454 7.0095 16 6 1.6508 -7.7969 7.0920 17 6 1.1734 -7.1224 5.9528 18 6 -0.0085 -6.3496 6.0259 19 1 -0.1627 -5.5324 5.3368 20 6 -0.9782 -6.6435 6.9910 21 7 -1.0708 -7.8544 7.4777 22 14 -2.1404 -5.3070 7.5846 23 1 -3.0662 -5.8709 8.5996 24 1 -1.3554 -4.2013 8.1899 25 1 -2.9241 -4.7864 6.4356 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1301 1.4424 -0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6765 -1.7489 -1.2494 33 1 1.6766 -0.2073 -2.1393 34 1 3.1299 -0.7217 -1.2492 35 1 1.6766 -0.2076 2.1392 36 1 3.1300 -0.7217 1.2489 37 1 1.8932 -2.6776 0.3592 38 1 0.4399 -2.1637 1.2491 39 1 1.6775 -2.3716 3.3882 40 1 3.1304 -2.8853 2.4975 41 1 0.9936 -4.5835 1.7709 42 1 1.7380 -7.0308 2.6190 43 1 0.2847 -6.5170 3.5090 44 1 3.5755 -8.0549 3.7523 45 1 4.3944 -9.2270 5.7541 46 1 3.1709 -9.0635 7.8825 47 1 1.1159 -7.7265 8.0275 48 1 -0.5257 -8.5677 7.1103 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777406832.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:52:57 Heat of formation + Delta-G solvation = -62.753039 kcal Electronic energy + Delta-G solvation = -24444.796150 eV Core-core repulsion = 21076.525967 eV Total energy + Delta-G solvation = -3368.270183 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.30890 -38.39469 -37.45007 -34.76351 -33.80000 -31.97734 -31.12604 -29.16360 -27.59782 -27.55131 -27.23190 -25.48330 -24.68038 -21.90651 -20.89284 -20.63238 -19.47138 -18.76773 -17.69035 -16.33689 -15.84438 -15.79287 -14.97305 -14.85627 -14.57761 -14.41852 -14.31773 -14.06600 -13.81773 -13.47013 -12.99761 -12.82636 -12.62174 -12.26635 -12.02507 -12.00102 -11.94925 -11.90490 -11.77706 -11.66625 -11.22798 -11.17536 -11.00674 -10.81490 -10.75986 -10.66636 -10.60928 -10.42268 -10.35450 -9.60150 -9.33409 -9.14351 -8.91122 -8.66054 -7.50447 -7.45572 -7.07611 -4.37082 2.80359 2.89901 3.18276 3.32133 3.37694 3.40686 3.68277 4.06018 4.45546 4.54254 4.55237 4.64060 4.92804 4.99439 5.20020 5.31421 5.34816 5.38594 5.46696 5.51298 5.54479 5.58198 5.64763 5.70227 5.71538 5.79274 5.85428 5.94826 5.98857 6.01306 6.04578 6.13288 6.20836 6.22521 6.24889 6.38082 6.41299 6.73700 6.84515 7.05203 7.26221 7.47285 7.72826 7.87784 7.91210 7.97940 8.01751 8.26204 8.40059 8.84074 8.90443 8.97830 10.11801 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.015012 B = 0.003254 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.673989 B = 8603.527387 C = 9991.536685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.070 4.070 3 C -0.142 4.142 4 C -0.144 4.144 5 C -0.106 4.106 6 C -0.133 4.133 7 C 0.120 3.880 8 N -0.746 5.746 9 C 0.513 3.487 10 O -0.522 6.522 11 C -0.070 4.070 12 C -0.184 4.184 13 C -0.070 4.070 14 C -0.253 4.253 15 C -0.087 4.087 16 C -0.216 4.216 17 C 0.116 3.884 18 C -0.517 4.517 19 H 0.072 0.928 20 C 0.040 3.960 21 N -0.800 5.800 22 Si 1.060 2.940 23 H -0.274 1.274 24 H -0.275 1.275 25 H -0.277 1.277 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.395 0.605 42 H 0.075 0.925 43 H 0.095 0.905 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.088 0.912 47 H 0.104 0.896 48 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.916 12.468 -15.390 19.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.070 4.070 3 C -0.199 4.199 4 C -0.201 4.201 5 C -0.144 4.144 6 C -0.171 4.171 7 C -0.004 4.004 8 N -0.400 5.400 9 C 0.300 3.700 10 O -0.396 6.396 11 C -0.110 4.110 12 C -0.185 4.185 13 C -0.088 4.088 14 C -0.273 4.273 15 C -0.105 4.105 16 C -0.236 4.236 17 C 0.113 3.887 18 C -0.545 4.545 19 H 0.090 0.910 20 C -0.181 4.181 21 N -0.423 5.423 22 Si 0.884 3.116 23 H -0.199 1.199 24 H -0.201 1.201 25 H -0.203 1.203 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.228 0.772 42 H 0.093 0.907 43 H 0.113 0.887 44 H 0.104 0.896 45 H 0.105 0.895 46 H 0.106 0.894 47 H 0.122 0.878 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.201 13.014 -13.598 18.822 hybrid contribution 1.113 -0.422 -1.426 1.858 sum 1.314 12.592 -15.024 19.647 Atomic orbital electron populations 1.21947 0.94596 1.02073 1.01586 1.20547 0.95743 0.95345 0.95379 1.21873 1.00947 0.95435 1.01645 1.21941 1.00957 1.00473 0.96760 1.21560 1.00788 0.94616 0.97467 1.21924 1.01566 0.95842 0.97772 1.21238 0.98954 0.82280 0.97913 1.46136 1.55474 1.12113 1.26320 1.21193 0.79826 0.88095 0.80838 1.90679 1.36782 1.77159 1.34983 1.20248 1.02295 0.90571 0.97898 1.19023 1.00180 1.05909 0.93430 1.20358 0.94935 0.97020 0.96478 1.20260 1.02771 1.09794 0.94444 1.20600 0.95531 0.98317 0.96068 1.21138 0.98767 1.05516 0.98134 1.17397 0.92017 0.89493 0.89783 1.20438 1.02552 1.14800 1.16700 0.90999 1.26922 0.98599 0.99819 0.92795 1.70450 1.33928 1.01493 1.36435 0.83715 0.75695 0.74870 0.77317 1.19884 1.20053 1.20262 0.92615 0.92947 0.92193 0.92703 0.92812 0.92638 0.92239 0.92940 0.92721 0.91569 0.91689 0.91207 0.91042 0.91987 0.92213 0.77218 0.90699 0.88700 0.89629 0.89470 0.89399 0.87763 0.88742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 8.12 37.16 0.30 -0.77 16 2 C -0.07 -0.52 0.80 -154.51 -0.12 -0.65 16 3 C -0.14 -0.99 8.47 37.16 0.31 -0.67 16 4 C -0.14 -1.02 8.12 37.16 0.30 -0.72 16 5 C -0.11 -0.91 4.27 -26.73 -0.11 -1.02 16 6 C -0.13 -1.24 4.62 -26.73 -0.12 -1.37 16 7 C 0.12 1.59 5.67 -4.04 -0.02 1.57 16 8 N -0.75 -11.05 5.56 -60.30 -0.33 -11.39 16 9 C 0.51 10.29 7.46 -10.99 -0.08 10.21 16 10 O -0.52 -12.99 16.03 5.56 0.09 -12.90 16 11 C -0.07 -1.41 5.18 -29.03 -0.15 -1.56 16 12 C -0.18 -4.50 4.43 -103.91 -0.46 -4.96 16 13 C -0.07 -1.63 9.66 -39.66 -0.38 -2.01 16 14 C -0.25 -5.96 10.05 -39.29 -0.39 -6.36 16 15 C -0.09 -2.13 10.02 -39.66 -0.40 -2.52 16 16 C -0.22 -5.81 7.95 -38.87 -0.31 -6.12 16 17 C 0.12 3.14 5.30 -106.82 -0.57 2.57 16 18 C -0.52 -13.85 8.08 -37.74 -0.30 -14.15 16 19 H 0.07 1.90 6.73 -52.49 -0.35 1.54 16 20 C 0.04 1.04 4.94 -17.34 -0.09 0.95 16 21 N -0.80 -21.46 12.31 55.55 0.68 -20.77 16 22 Si 1.06 22.26 30.00 -169.99 -5.10 17.16 16 23 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 24 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 25 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.45 6.43 -51.93 -0.33 0.11 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.42 6.43 -51.93 -0.33 0.09 16 33 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.60 6.43 -51.93 -0.33 0.26 16 38 H 0.07 0.64 6.43 -51.93 -0.33 0.31 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.39 4.54 8.47 -40.82 -0.35 4.19 16 42 H 0.07 1.25 8.05 -51.93 -0.42 0.83 16 43 H 0.09 1.87 7.06 -51.93 -0.37 1.50 16 44 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 45 H 0.09 1.82 8.06 -52.49 -0.42 1.39 16 46 H 0.09 1.92 8.06 -52.49 -0.42 1.49 16 47 H 0.10 2.87 6.49 -52.49 -0.34 2.53 16 48 H 0.30 8.22 6.68 -40.82 -0.27 7.94 16 LS Contribution 381.32 15.07 5.75 5.75 Total: -1.00 -31.27 381.32 -9.66 -40.94 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -8.15 Total: 8.78 kcal Atomic # 6 Polarization: -24.97 SS G_CDS: -2.60 Total: -27.57 kcal Atomic # 7 Polarization: -32.51 SS G_CDS: 0.35 Total: -32.16 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.09 Total: -12.90 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.10 Total: 17.16 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.27 -9.66 -40.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777406832.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.816 kcal (2) G-P(sol) polarization free energy of solvation -31.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds