Wall clock time and date at job start Tue Mar 31 2020 08:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47533 * 2 1 4 4 C 1.53005 * 109.46655 * 240.00079 * 2 1 3 5 5 C 1.52998 * 109.46924 * 120.00484 * 2 1 3 6 6 C 1.53001 * 109.47375 * 59.99832 * 5 2 1 7 7 C 1.52996 * 109.47010 * 179.97438 * 6 5 2 8 8 N 1.46507 * 109.47103 * 179.97438 * 7 6 5 9 9 C 1.34773 * 120.00266 * 180.02562 * 8 7 6 10 10 O 1.21282 * 119.99503 * 359.97438 * 9 8 7 11 11 C 1.50694 * 120.00092 * 180.02562 * 9 8 7 12 12 C 1.50707 * 109.47262 * 179.97438 * 11 9 8 13 13 C 1.37643 * 120.12639 * 265.30991 * 12 11 9 14 14 C 1.38615 * 120.24281 * 180.31829 * 13 12 11 15 15 C 1.38658 * 120.50051 * 359.66907 * 14 13 12 16 16 C 1.37593 * 120.25264 * 0.02562 * 15 14 13 17 17 C 1.40688 * 120.12508 * 84.99750 * 12 11 9 18 18 C 1.41401 * 120.24844 * 359.97438 * 17 12 11 19 19 H 1.07999 * 119.99289 * 334.28466 * 18 17 12 20 20 C 1.39937 * 120.00394 * 154.28925 * 18 17 12 21 21 N 1.30829 * 120.00181 * 334.60180 * 20 18 17 22 22 Si 1.86801 * 120.00083 * 154.60226 * 20 18 17 23 23 H 1.48505 * 109.47160 * 179.97438 * 22 20 18 24 24 H 1.48495 * 109.47100 * 300.00105 * 22 20 18 25 25 H 1.48502 * 109.47051 * 60.00179 * 22 20 18 26 26 H 1.09003 * 109.46707 * 300.00113 * 1 2 3 27 27 H 1.09004 * 109.46982 * 59.99504 * 1 2 3 28 28 H 1.08997 * 109.47446 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47132 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.46879 * 300.00332 * 3 2 1 31 31 H 1.09001 * 109.46727 * 60.00070 * 3 2 1 32 32 H 1.08997 * 109.47398 * 300.00280 * 4 2 1 33 33 H 1.09004 * 109.47085 * 60.00481 * 4 2 1 34 34 H 1.08998 * 109.47108 * 180.02562 * 4 2 1 35 35 H 1.09001 * 109.47080 * 299.99773 * 5 2 1 36 36 H 1.08998 * 109.46872 * 179.97438 * 5 2 1 37 37 H 1.08992 * 109.47153 * 59.99702 * 6 5 2 38 38 H 1.09003 * 109.46640 * 300.00124 * 6 5 2 39 39 H 1.09001 * 109.47212 * 60.00084 * 7 6 5 40 40 H 1.08991 * 109.47261 * 299.99917 * 7 6 5 41 41 H 0.97000 * 119.99705 * 0.02562 * 8 7 6 42 42 H 1.09001 * 109.46892 * 59.99768 * 11 9 8 43 43 H 1.08991 * 109.47294 * 299.99778 * 11 9 8 44 44 H 1.07998 * 119.87840 * 0.02562 * 13 12 11 45 45 H 1.07996 * 119.74749 * 179.68975 * 14 13 12 46 46 H 1.08000 * 119.87393 * 180.02562 * 15 14 13 47 47 H 1.07996 * 120.12941 * 180.02562 * 16 15 14 48 48 H 0.96998 * 119.99709 * 354.17607 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0400 -0.7214 1.2492 6 6 1.5299 -2.1638 1.2491 7 6 2.0404 -2.8853 2.4980 8 7 1.5516 -4.2664 2.4983 9 6 1.8770 -5.0963 3.5091 10 8 2.5750 -4.6999 4.4182 11 6 1.3746 -6.5170 3.5090 12 6 1.8774 -7.2277 4.7392 13 6 3.0305 -7.9771 4.6814 14 6 3.4915 -8.6371 5.8098 15 6 2.8023 -8.5454 7.0095 16 6 1.6508 -7.7969 7.0920 17 6 1.1734 -7.1224 5.9528 18 6 -0.0085 -6.3496 6.0259 19 1 -0.1627 -5.5324 5.3368 20 6 -0.9782 -6.6435 6.9910 21 7 -1.0708 -7.8544 7.4777 22 14 -2.1404 -5.3070 7.5846 23 1 -3.0662 -5.8709 8.5996 24 1 -1.3554 -4.2013 8.1899 25 1 -2.9241 -4.7864 6.4356 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1301 1.4424 -0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6765 -1.7489 -1.2494 33 1 1.6766 -0.2073 -2.1393 34 1 3.1299 -0.7217 -1.2492 35 1 1.6766 -0.2076 2.1392 36 1 3.1300 -0.7217 1.2489 37 1 1.8932 -2.6776 0.3592 38 1 0.4399 -2.1637 1.2491 39 1 1.6775 -2.3716 3.3882 40 1 3.1304 -2.8853 2.4975 41 1 0.9936 -4.5835 1.7709 42 1 1.7380 -7.0308 2.6190 43 1 0.2847 -6.5170 3.5090 44 1 3.5755 -8.0549 3.7523 45 1 4.3944 -9.2270 5.7541 46 1 3.1709 -9.0635 7.8825 47 1 1.1159 -7.7265 8.0275 48 1 -0.5257 -8.5677 7.1103 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777406832.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:52:57 Heat of formation + Delta-G solvation = -79.397896 kcal Electronic energy + Delta-G solvation = -24445.517925 eV Core-core repulsion = 21076.525967 eV Total energy + Delta-G solvation = -3368.991958 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.85508 -39.45926 -38.94253 -36.03094 -35.73116 -33.63901 -32.28362 -31.10022 -28.82332 -28.12268 -28.09805 -27.01159 -26.20876 -22.88156 -22.81478 -22.26813 -21.09238 -19.61149 -19.42564 -17.79886 -17.20593 -16.93434 -16.62567 -16.31936 -15.91543 -15.61786 -15.39725 -15.29152 -14.92450 -14.84002 -14.50545 -14.18375 -13.87238 -13.61607 -13.56723 -13.40239 -12.98646 -12.77110 -12.63528 -12.62064 -12.60433 -12.56798 -12.50408 -12.24012 -11.98419 -11.81196 -11.49794 -11.42196 -11.32293 -11.30382 -11.21556 -10.84567 -10.75901 -10.02034 -9.44398 -9.42638 -9.05466 -6.39448 0.91411 0.98867 1.46597 1.62013 1.76265 1.80673 2.31009 2.36571 2.72294 3.59096 3.74685 3.91834 3.93333 4.07580 4.14905 4.21663 4.30105 4.41075 4.48955 4.50839 4.57785 4.65645 4.69027 4.71578 4.73086 4.87328 4.88064 4.94512 4.96710 5.00609 5.08009 5.10692 5.13563 5.21487 5.25097 5.28938 5.32977 5.42948 5.50198 5.55959 5.58373 5.59440 5.80332 5.84420 5.99113 6.05328 6.29762 6.45643 6.67762 6.87213 7.02377 7.43176 8.08671 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.015012 B = 0.003254 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.673989 B = 8603.527387 C = 9991.536685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.068 4.068 3 C -0.142 4.142 4 C -0.144 4.144 5 C -0.106 4.106 6 C -0.119 4.119 7 C 0.120 3.880 8 N -0.723 5.723 9 C 0.513 3.487 10 O -0.579 6.579 11 C -0.070 4.070 12 C -0.190 4.190 13 C -0.081 4.081 14 C -0.251 4.251 15 C -0.097 4.097 16 C -0.246 4.246 17 C 0.084 3.916 18 C -0.541 4.541 19 H 0.068 0.932 20 C 0.004 3.996 21 N -0.820 5.820 22 Si 1.107 2.893 23 H -0.269 1.269 24 H -0.276 1.276 25 H -0.252 1.252 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.042 0.958 40 H 0.051 0.949 41 H 0.414 0.586 42 H 0.114 0.886 43 H 0.095 0.905 44 H 0.120 0.880 45 H 0.119 0.881 46 H 0.110 0.890 47 H 0.083 0.917 48 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.962 13.213 -17.877 22.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.068 4.068 3 C -0.199 4.199 4 C -0.201 4.201 5 C -0.144 4.144 6 C -0.157 4.157 7 C -0.004 4.004 8 N -0.377 5.377 9 C 0.301 3.699 10 O -0.458 6.458 11 C -0.109 4.109 12 C -0.192 4.192 13 C -0.099 4.099 14 C -0.270 4.270 15 C -0.116 4.116 16 C -0.266 4.266 17 C 0.082 3.918 18 C -0.570 4.570 19 H 0.086 0.914 20 C -0.212 4.212 21 N -0.443 5.443 22 Si 0.925 3.075 23 H -0.193 1.193 24 H -0.202 1.202 25 H -0.176 1.176 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.060 0.940 40 H 0.069 0.931 41 H 0.251 0.749 42 H 0.132 0.868 43 H 0.114 0.886 44 H 0.138 0.862 45 H 0.137 0.863 46 H 0.128 0.872 47 H 0.101 0.899 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.230 13.756 -16.156 21.220 hybrid contribution 1.247 -0.689 -0.737 1.604 sum 1.477 13.067 -16.894 21.408 Atomic orbital electron populations 1.21954 0.94421 1.02150 1.01731 1.20526 0.95841 0.95502 0.94912 1.21872 1.00987 0.95179 1.01876 1.21940 1.00941 1.00559 0.96653 1.21554 1.00729 0.94141 0.97952 1.21845 1.01924 0.95847 0.96064 1.21346 0.98527 0.81328 0.99198 1.45918 1.54322 1.12159 1.25319 1.21145 0.79201 0.88514 0.81009 1.90660 1.39656 1.78109 1.37363 1.20278 1.02281 0.90797 0.97546 1.19542 1.00052 1.05434 0.94165 1.20818 0.94789 0.96352 0.97980 1.20724 1.03307 1.09091 0.93888 1.20900 0.94931 0.98048 0.97682 1.21155 1.00120 1.07627 0.97665 1.17797 0.92907 0.90141 0.90974 1.20542 1.03263 1.15257 1.17929 0.91399 1.28227 0.99661 1.00869 0.92415 1.70553 1.34609 1.01832 1.37334 0.83140 0.74228 0.72308 0.77847 1.19322 1.20161 1.17573 0.93096 0.92243 0.92127 0.92676 0.92095 0.92926 0.92039 0.92302 0.92780 0.92297 0.91832 0.89636 0.90245 0.93995 0.93051 0.74898 0.86755 0.88650 0.86241 0.86278 0.87242 0.89870 0.90393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 8.12 71.98 0.58 -1.26 16 2 C -0.07 -0.87 0.80 -52.18 -0.04 -0.92 16 3 C -0.14 -1.74 8.47 71.98 0.61 -1.13 16 4 C -0.14 -1.67 8.12 71.98 0.58 -1.09 16 5 C -0.11 -1.65 4.27 30.59 0.13 -1.52 16 6 C -0.12 -1.96 4.62 30.59 0.14 -1.82 16 7 C 0.12 3.05 5.67 86.38 0.49 3.54 16 8 N -0.72 -20.14 5.56 -463.07 -2.57 -22.71 16 9 C 0.51 20.13 7.46 87.66 0.65 20.78 16 10 O -0.58 -29.07 16.03 -3.04 -0.05 -29.12 16 11 C -0.07 -2.68 5.18 29.10 0.15 -2.52 16 12 C -0.19 -9.24 4.43 -19.40 -0.09 -9.33 16 13 C -0.08 -3.67 9.66 22.22 0.21 -3.45 16 14 C -0.25 -11.40 10.05 22.46 0.23 -11.17 16 15 C -0.10 -4.78 10.02 22.22 0.22 -4.56 16 16 C -0.25 -13.68 7.95 22.73 0.18 -13.50 16 17 C 0.08 4.68 5.30 -21.29 -0.11 4.57 16 18 C -0.54 -29.81 8.08 23.46 0.19 -29.62 16 19 H 0.07 3.67 6.73 -2.91 -0.02 3.65 16 20 C 0.00 0.23 4.94 85.25 0.42 0.65 16 21 N -0.82 -45.53 12.31 21.82 0.27 -45.27 16 22 Si 1.11 45.28 30.00 68.60 2.06 47.34 16 23 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 24 H -0.28 -11.25 7.11 99.48 0.71 -10.54 16 25 H -0.25 -9.20 7.11 99.48 0.71 -8.49 16 26 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 28 H 0.06 0.75 6.43 -2.39 -0.02 0.74 16 29 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.06 0.69 6.43 -2.39 -0.02 0.67 16 33 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 34 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.09 1.18 6.43 -2.39 -0.02 1.17 16 38 H 0.08 1.22 6.43 -2.39 -0.02 1.21 16 39 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.41 8.32 8.47 -92.71 -0.79 7.53 16 42 H 0.11 3.43 8.05 -2.39 -0.02 3.41 16 43 H 0.10 3.67 7.06 -2.39 -0.02 3.65 16 44 H 0.12 4.50 8.06 -2.91 -0.02 4.48 16 45 H 0.12 4.58 8.06 -2.91 -0.02 4.56 16 46 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 47 H 0.08 4.85 6.49 -2.91 -0.02 4.83 16 48 H 0.28 16.37 6.68 -92.71 -0.62 15.75 16 Total: -1.00 -70.19 381.32 4.56 -65.63 By element: Atomic # 1 Polarization: 36.18 SS G_CDS: 0.30 Total: 36.47 kcal Atomic # 6 Polarization: -56.91 SS G_CDS: 4.56 Total: -52.35 kcal Atomic # 7 Polarization: -65.67 SS G_CDS: -2.30 Total: -67.98 kcal Atomic # 8 Polarization: -29.07 SS G_CDS: -0.05 Total: -29.12 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.06 Total: 47.34 kcal Total: -70.19 4.56 -65.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777406832.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.770 kcal (2) G-P(sol) polarization free energy of solvation -70.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds