Wall clock time and date at job start Tue Mar 31 2020 07:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47212 * 2 1 4 4 C 1.53001 * 109.47281 * 119.99955 * 2 1 3 5 5 C 1.53001 * 109.47431 * 59.99697 * 4 2 1 6 6 C 1.53008 * 109.46644 * 60.00231 * 5 4 2 7 7 C 1.53001 * 109.47018 * 300.00022 * 6 5 4 8 8 H 1.08997 * 109.47284 * 299.99824 * 7 6 5 9 9 C 1.53008 * 109.47018 * 180.02562 * 7 6 5 10 10 N 1.46500 * 109.46544 * 65.00009 * 9 7 6 11 11 C 1.39679 * 119.99603 * 179.97438 * 10 9 7 12 12 C 1.39006 * 120.03494 * 359.72431 * 11 10 9 13 13 C 1.38160 * 120.05742 * 179.76811 * 12 11 10 14 14 C 1.38172 * 120.14116 * 0.50996 * 13 12 11 15 15 C 1.38918 * 120.07697 * 359.74585 * 14 13 12 16 16 O 1.35750 * 120.02668 * 180.02562 * 15 14 13 17 17 C 1.34836 * 116.99797 * 174.43588 * 16 15 14 18 18 H 1.08000 * 119.99957 * 5.05450 * 17 16 15 19 19 C 1.38653 * 119.99773 * 185.05318 * 17 16 15 20 20 N 1.31555 * 120.00328 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99797 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47461 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47173 * 119.99890 * 21 19 17 24 24 H 1.48501 * 109.47227 * 239.99928 * 21 19 17 25 25 C 1.38742 * 120.04159 * 180.02562 * 11 10 9 26 26 C 1.52996 * 109.47506 * 239.99840 * 2 1 3 27 27 H 1.09005 * 109.47386 * 300.00020 * 1 2 3 28 28 H 1.08992 * 109.47448 * 60.00393 * 1 2 3 29 29 H 1.09004 * 109.47243 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47035 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46624 * 300.00117 * 3 2 1 32 32 H 1.08997 * 109.46655 * 59.99689 * 3 2 1 33 33 H 1.09000 * 109.47048 * 299.99833 * 4 2 1 34 34 H 1.08997 * 109.47284 * 180.02562 * 4 2 1 35 35 H 1.08997 * 109.47406 * 300.00561 * 5 4 2 36 36 H 1.09001 * 109.47558 * 179.97438 * 5 4 2 37 37 H 1.09004 * 109.46884 * 180.02562 * 6 5 4 38 38 H 1.08997 * 109.46949 * 60.00050 * 6 5 4 39 39 H 1.08995 * 109.46888 * 184.99797 * 9 7 6 40 40 H 1.08998 * 109.46834 * 305.00634 * 9 7 6 41 41 H 0.96993 * 120.00458 * 0.02562 * 10 9 7 42 42 H 1.07999 * 119.97241 * 0.02562 * 12 11 10 43 43 H 1.07998 * 119.92664 * 180.27414 * 13 12 11 44 44 H 1.07993 * 119.95799 * 179.72378 * 14 13 12 45 45 H 0.97001 * 120.00172 * 179.97438 * 20 19 17 46 46 H 1.08004 * 120.07140 * 359.97438 * 25 11 10 47 47 H 1.08996 * 109.47694 * 180.02562 * 26 2 1 48 48 H 1.09002 * 109.46953 * 59.99501 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.5300 -2.1637 1.2494 6 6 2.0400 -2.8850 0.0001 7 6 1.5300 -2.1638 -1.2492 8 1 0.4400 -2.1638 -1.2492 9 6 2.0395 -2.8854 -2.4985 10 7 1.4548 -4.2273 -2.5597 11 6 1.7736 -5.0803 -3.6189 12 6 2.6410 -4.6545 -4.6182 13 6 2.9604 -5.4995 -5.6636 14 6 2.4110 -6.7658 -5.7248 15 6 1.5393 -7.1953 -4.7320 16 8 1.0005 -8.4398 -4.7929 17 6 0.2553 -8.8363 -3.7415 18 1 0.0422 -8.1452 -2.9394 19 6 -0.2375 -10.1313 -3.6901 20 7 0.0216 -10.9730 -4.6674 21 14 -1.2705 -10.6804 -2.2338 22 1 -1.4172 -9.5534 -1.2779 23 1 -2.6122 -11.1028 -2.7099 24 1 -0.6038 -11.8212 -1.5561 25 6 1.2200 -6.3511 -3.6781 26 6 2.0400 -0.7212 -1.2492 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6767 -0.2074 2.1392 34 1 3.1300 -0.7208 1.2495 35 1 0.4400 -2.1638 1.2493 36 1 1.8937 -2.6777 2.1391 37 1 1.6763 -3.9126 -0.0001 38 1 3.1300 -2.8850 0.0001 39 1 1.7511 -2.3226 -3.3861 40 1 3.1258 -2.9641 -2.4549 41 1 0.8458 -4.5232 -1.8652 42 1 3.0689 -3.6638 -4.5752 43 1 3.6380 -5.1682 -6.4365 44 1 2.6592 -7.4223 -6.5456 45 1 -0.3228 -11.8791 -4.6312 46 1 0.5423 -6.6827 -2.9053 47 1 3.1300 -0.7217 -1.2490 48 1 1.6766 -0.2075 -2.1392 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779588381.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:54:04 Heat of formation + Delta-G solvation = -33.950090 kcal Electronic energy + Delta-G solvation = -24622.099495 eV Core-core repulsion = 21255.078302 eV Total energy + Delta-G solvation = -3367.021193 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.05407 -38.92597 -37.01765 -35.15681 -33.09838 -32.15856 -31.59962 -29.08016 -28.07861 -27.62686 -26.56660 -25.26195 -25.08309 -22.36880 -21.62637 -20.95093 -20.15458 -18.66030 -17.78929 -17.27712 -15.85488 -15.48092 -15.09324 -14.98873 -14.86613 -14.53003 -14.29311 -14.06838 -13.94210 -13.56338 -13.48572 -13.12428 -12.94761 -12.78503 -12.36733 -12.29385 -12.15559 -11.89964 -11.67230 -11.59890 -11.53680 -11.41424 -11.18088 -11.09004 -10.86405 -10.72243 -10.54489 -10.39711 -10.34882 -10.20993 -10.13850 -9.33378 -9.32015 -8.72307 -7.29445 -6.70651 -6.37487 -3.96481 2.43599 2.62985 3.16116 3.16979 3.22198 3.82659 4.02541 4.36523 4.38569 4.46331 4.73287 4.77790 4.91708 5.03440 5.10675 5.12505 5.19368 5.25537 5.33086 5.39980 5.40448 5.42245 5.47597 5.58406 5.65812 5.68061 5.72265 5.76724 5.77147 5.81027 5.86002 5.98221 6.03469 6.04417 6.09458 6.13847 6.16086 6.33052 6.34908 6.42242 6.71182 6.71363 7.10234 7.20340 7.44340 7.54402 7.72927 8.08932 8.09534 8.27488 9.08934 9.82360 10.81143 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.016925 B = 0.003042 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.939348 B = 9202.496139 C =10513.334663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.064 4.064 3 C -0.141 4.141 4 C -0.107 4.107 5 C -0.122 4.122 6 C -0.114 4.114 7 C -0.099 4.099 8 H 0.078 0.922 9 C 0.137 3.863 10 N -0.753 5.753 11 C 0.250 3.750 12 C -0.279 4.279 13 C -0.040 4.040 14 C -0.238 4.238 15 C 0.189 3.811 16 O -0.180 6.180 17 C -0.387 4.387 18 H 0.091 0.909 19 C 0.037 3.963 20 N -0.865 5.865 21 Si 0.939 3.061 22 H -0.268 1.268 23 H -0.277 1.277 24 H -0.277 1.277 25 C -0.303 4.303 26 C -0.099 4.099 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.393 0.607 42 H 0.103 0.897 43 H 0.109 0.891 44 H 0.112 0.888 45 H 0.268 0.732 46 H 0.123 0.877 47 H 0.064 0.936 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.141 21.926 10.698 24.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.064 4.064 3 C -0.199 4.199 4 C -0.145 4.145 5 C -0.159 4.159 6 C -0.151 4.151 7 C -0.118 4.118 8 H 0.096 0.904 9 C 0.012 3.988 10 N -0.385 5.385 11 C 0.148 3.852 12 C -0.302 4.302 13 C -0.059 4.059 14 C -0.258 4.258 15 C 0.135 3.865 16 O -0.083 6.083 17 C -0.464 4.464 18 H 0.108 0.892 19 C -0.166 4.166 20 N -0.501 5.501 21 Si 0.764 3.236 22 H -0.192 1.192 23 H -0.202 1.202 24 H -0.202 1.202 25 C -0.327 4.327 26 C -0.137 4.137 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.227 0.773 42 H 0.121 0.879 43 H 0.127 0.873 44 H 0.130 0.870 45 H 0.078 0.922 46 H 0.141 0.859 47 H 0.083 0.917 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.197 21.677 10.435 24.269 hybrid contribution -0.753 -0.368 1.037 1.334 sum 2.444 21.308 11.472 24.323 Atomic orbital electron populations 1.21984 0.94693 1.02189 1.01433 1.20512 0.95704 0.94896 0.95283 1.21866 1.00916 0.95473 1.01620 1.21593 1.00480 0.95482 0.96940 1.21590 1.01005 0.95453 0.97895 1.21581 1.00922 0.99025 0.93589 1.21415 1.01094 0.94815 0.94435 0.90418 1.21208 0.97418 0.83449 0.96738 1.44547 1.53204 1.13958 1.26810 1.17471 0.92073 0.88824 0.86820 1.20074 1.09655 1.01046 0.99428 1.20376 0.96763 0.92609 0.96193 1.20032 1.05566 0.97989 1.02234 1.19068 0.89753 0.85595 0.92087 1.83988 1.57986 1.25055 1.41265 1.21341 1.28910 0.97013 0.99115 0.89180 1.25264 0.98023 0.94791 0.98544 1.70051 1.43226 1.05689 1.31120 0.85676 0.79042 0.78967 0.79875 1.19243 1.20239 1.20223 1.20498 1.12451 0.94809 1.04898 1.21554 1.00686 0.94235 0.97262 0.92974 0.92787 0.91900 0.92723 0.92676 0.92806 0.92281 0.92059 0.91729 0.92147 0.91704 0.91880 0.92902 0.92871 0.77267 0.87933 0.87278 0.86972 0.92215 0.85901 0.91725 0.91761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 7.78 37.15 0.29 -0.80 16 2 C -0.06 -0.47 0.77 -154.51 -0.12 -0.59 16 3 C -0.14 -0.93 8.47 37.16 0.31 -0.62 16 4 C -0.11 -0.80 4.73 -26.73 -0.13 -0.93 16 5 C -0.12 -1.00 5.65 -26.73 -0.15 -1.15 16 6 C -0.11 -1.07 5.08 -26.73 -0.14 -1.21 16 7 C -0.10 -0.93 1.95 -90.61 -0.18 -1.11 16 8 H 0.08 0.76 6.43 -51.93 -0.33 0.43 16 9 C 0.14 1.63 4.30 -4.04 -0.02 1.61 16 10 N -0.75 -11.35 5.46 -58.65 -0.32 -11.67 16 11 C 0.25 4.78 6.65 -83.81 -0.56 4.23 16 12 C -0.28 -5.12 9.31 -39.33 -0.37 -5.49 16 13 C -0.04 -0.77 10.03 -39.63 -0.40 -1.16 16 14 C -0.24 -5.30 9.99 -39.35 -0.39 -5.70 16 15 C 0.19 4.78 6.64 -39.14 -0.26 4.52 16 16 O -0.18 -5.29 9.76 0.03 0.00 -5.29 16 17 C -0.39 -11.09 9.49 30.89 0.29 -10.79 16 18 H 0.09 2.40 5.20 -52.49 -0.27 2.13 16 19 C 0.04 1.05 5.49 -17.52 -0.10 0.95 16 20 N -0.87 -25.90 13.67 55.48 0.76 -25.14 16 21 Si 0.94 20.93 29.55 -169.99 -5.02 15.91 16 22 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 23 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 24 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 25 C -0.30 -6.84 9.01 -39.20 -0.35 -7.19 16 26 C -0.10 -0.81 4.01 -26.73 -0.11 -0.91 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.50 4.81 -51.93 -0.25 0.25 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.53 6.43 -51.93 -0.33 0.20 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.69 7.18 -51.93 -0.37 0.31 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.05 0.64 7.94 -51.93 -0.41 0.23 16 40 H 0.05 0.65 7.96 -51.93 -0.41 0.24 16 41 H 0.39 5.58 7.66 -40.82 -0.31 5.26 16 42 H 0.10 1.63 6.73 -52.49 -0.35 1.28 16 43 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 44 H 0.11 2.43 8.06 -52.49 -0.42 2.01 16 45 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 46 H 0.12 2.80 5.64 -52.48 -0.30 2.50 16 47 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 48 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 369.07 15.07 5.56 5.56 Total: -1.00 -30.90 369.07 -9.36 -40.26 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -7.98 Total: 6.71 kcal Atomic # 6 Polarization: -23.97 SS G_CDS: -2.36 Total: -26.33 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: 0.44 Total: -36.81 kcal Atomic # 8 Polarization: -5.29 SS G_CDS: 0.00 Total: -5.29 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.90 -9.36 -40.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779588381.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.310 kcal (2) G-P(sol) polarization free energy of solvation -30.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds