Wall clock time and date at job start Tue Mar 31 2020 07:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46896 * 110.99953 * 2 1 4 4 C 1.50703 * 109.46885 * 293.95072 * 3 2 1 5 5 C 1.38294 * 119.93358 * 269.72752 * 4 3 2 6 6 C 1.38098 * 120.06979 * 179.73052 * 5 4 3 7 7 C 1.38878 * 119.92978 * 0.51649 * 6 5 4 8 8 O 1.35756 * 120.07259 * 179.72600 * 7 6 5 9 9 C 1.34823 * 117.00121 * 174.49118 * 8 7 6 10 10 H 1.07997 * 120.00021 * 5.06080 * 9 8 7 11 11 C 1.38654 * 120.00088 * 185.05903 * 9 8 7 12 12 N 1.31556 * 120.00035 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 119.99906 * 0.02562 * 11 9 8 14 14 H 1.48498 * 109.47318 * 89.99601 * 13 11 9 15 15 H 1.48506 * 109.47137 * 209.99980 * 13 11 9 16 16 H 1.48504 * 109.46883 * 329.99383 * 13 11 9 17 17 C 1.38877 * 119.86237 * 359.76170 * 7 6 5 18 18 C 1.38103 * 119.92758 * 359.97438 * 17 7 6 19 19 C 1.46898 * 111.00189 * 123.95375 * 2 1 3 20 20 H 1.09002 * 110.43657 * 293.50448 * 19 2 1 21 21 C 1.54895 * 110.60166 * 170.88699 * 19 2 1 22 22 C 1.54891 * 102.74917 * 203.32124 * 21 19 2 23 23 C 1.54275 * 104.19604 * 37.94458 * 22 21 19 24 24 C 1.53002 * 110.02985 * 217.10637 * 23 22 21 25 25 C 1.53002 * 110.07489 * 95.69396 * 23 22 21 26 26 C 1.53882 * 106.59554 * 336.38853 * 23 22 21 27 27 H 1.08996 * 109.46918 * 296.04280 * 1 2 3 28 28 H 1.09001 * 109.47246 * 56.05237 * 1 2 3 29 29 H 1.09002 * 109.46717 * 176.04722 * 1 2 3 30 30 H 1.08997 * 109.47619 * 53.95424 * 3 2 1 31 31 H 1.08999 * 109.47023 * 173.95406 * 3 2 1 32 32 H 1.08003 * 119.96939 * 359.97438 * 5 4 3 33 33 H 1.08003 * 120.03939 * 180.27474 * 6 5 4 34 34 H 0.97007 * 119.99941 * 179.97438 * 12 11 9 35 35 H 1.08001 * 120.03618 * 179.97438 * 17 7 6 36 36 H 1.08003 * 119.95994 * 180.02562 * 18 17 7 37 37 H 1.08995 * 110.75373 * 321.63906 * 21 19 2 38 38 H 1.08994 * 110.75286 * 84.82497 * 21 19 2 39 39 H 1.08991 * 110.48733 * 279.26763 * 22 21 19 40 40 H 1.08999 * 110.48578 * 156.61636 * 22 21 19 41 41 H 1.08997 * 109.46770 * 177.16780 * 24 23 22 42 42 H 1.08994 * 109.47107 * 57.16171 * 24 23 22 43 43 H 1.08995 * 109.46694 * 297.15909 * 24 23 22 44 44 H 1.09000 * 109.47142 * 182.12337 * 25 23 22 45 45 H 1.09003 * 109.46665 * 302.11648 * 25 23 22 46 46 H 1.09001 * 109.46893 * 62.11499 * 25 23 22 47 47 H 1.08994 * 110.03078 * 119.28937 * 26 23 22 48 48 H 1.08998 * 110.02908 * 240.71805 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0470 -1.2985 5 6 2.4979 1.9686 -2.3779 6 6 2.1696 2.5820 -3.5708 7 6 0.9784 3.2871 -3.6826 8 8 0.6554 3.8959 -4.8523 9 6 -0.5641 4.4655 -4.9295 10 1 -1.2019 4.4963 -4.0585 11 6 -0.9995 5.0119 -6.1272 12 7 -2.1893 5.5682 -6.2024 13 14 0.1033 4.9581 -7.6339 14 1 -0.1584 3.7099 -8.3946 15 1 -0.1803 6.1327 -8.4972 16 1 1.5256 4.9891 -7.2077 17 6 0.1186 3.3689 -2.5951 18 6 0.4501 2.7487 -1.4065 19 6 1.9955 -0.7660 1.1376 20 1 1.7516 -0.2690 2.0765 21 6 3.5273 -0.9541 1.0058 22 6 3.7924 -2.2138 1.8671 23 6 2.5779 -3.1240 1.5899 24 6 2.1719 -3.8598 2.8685 25 6 2.9175 -4.1325 0.4906 26 6 1.4355 -2.2034 1.1261 27 1 -0.3633 0.4512 0.9233 28 1 -0.3634 0.5739 -0.8525 29 1 -0.3633 -1.0253 -0.0708 30 1 1.5611 1.9274 0.8309 31 1 3.0797 1.3444 0.1082 32 1 3.4262 1.4239 -2.2891 33 1 2.8404 2.5167 -4.4148 34 1 -2.4938 5.9507 -7.0402 35 1 -0.8083 3.9168 -2.6788 36 1 -0.2184 2.8116 -0.5606 37 1 3.8068 -1.1304 -0.0329 38 1 4.0583 -0.0904 1.4059 39 1 3.8385 -1.9507 2.9237 40 1 4.7148 -2.7028 1.5540 41 1 1.2835 -4.4609 2.6751 42 1 1.9560 -3.1339 3.6524 43 1 2.9870 -4.5087 3.1886 44 1 2.0417 -4.7451 0.2764 45 1 3.2172 -3.5992 -0.4116 46 1 3.7354 -4.7714 0.8237 47 1 1.1235 -2.4746 0.1176 48 1 0.5918 -2.2808 1.8119 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796529946.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:54:54 Heat of formation + Delta-G solvation = -15.106239 kcal Electronic energy + Delta-G solvation = -24686.870248 eV Core-core repulsion = 21320.666186 eV Total energy + Delta-G solvation = -3366.204062 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.82451 -39.09722 -37.29541 -35.68989 -32.41656 -31.64332 -30.32677 -30.23012 -28.12152 -27.52788 -26.83541 -25.45844 -24.11098 -22.72985 -22.02467 -20.45481 -19.85671 -18.83645 -17.85643 -17.22891 -16.27021 -15.71741 -15.01640 -14.84377 -14.56571 -14.24465 -14.02537 -13.90051 -13.81673 -13.71467 -13.37909 -13.15978 -13.01881 -12.68851 -12.47845 -12.31485 -12.15568 -11.96724 -11.77043 -11.60061 -11.38961 -11.28277 -10.89490 -10.87934 -10.80413 -10.73205 -10.67096 -10.63384 -10.54186 -10.43844 -10.12859 -9.36741 -8.85534 -8.26186 -8.16891 -7.28167 -6.40627 -4.07101 2.15730 2.21551 3.22813 3.26653 3.41336 3.97758 4.24776 4.28998 4.45214 4.55790 4.67571 4.89046 5.03739 5.05286 5.12307 5.17652 5.19870 5.28017 5.33868 5.36689 5.42721 5.49558 5.55427 5.58525 5.60997 5.67250 5.72383 5.74277 5.78558 5.84405 5.85376 5.90535 5.91416 6.02940 6.11660 6.12449 6.16213 6.24640 6.26927 6.37239 6.60495 6.81758 7.03810 7.13674 7.27124 7.29102 7.36670 7.64012 7.81644 8.05446 8.94922 9.58002 10.67110 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.030488 B = 0.002609 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.183492 B =10727.690590 C =10876.426565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.528 5.528 3 C 0.110 3.890 4 C -0.168 4.168 5 C -0.055 4.055 6 C -0.194 4.194 7 C 0.161 3.839 8 O -0.219 6.219 9 C -0.389 4.389 10 H 0.106 0.894 11 C 0.063 3.937 12 N -0.881 5.881 13 Si 0.905 3.095 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.260 1.260 17 C -0.221 4.221 18 C -0.067 4.067 19 C 0.078 3.922 20 H 0.040 0.960 21 C -0.115 4.115 22 C -0.114 4.114 23 C -0.068 4.068 24 C -0.139 4.139 25 C -0.137 4.137 26 C -0.109 4.109 27 H 0.018 0.982 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.031 0.969 31 H 0.074 0.926 32 H 0.112 0.888 33 H 0.116 0.884 34 H 0.279 0.721 35 H 0.131 0.869 36 H 0.105 0.895 37 H 0.079 0.921 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.052 0.948 44 H 0.052 0.948 45 H 0.059 0.941 46 H 0.051 0.949 47 H 0.078 0.922 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.721 -15.832 16.547 24.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.252 5.252 3 C -0.016 4.016 4 C -0.169 4.169 5 C -0.074 4.074 6 C -0.213 4.213 7 C 0.109 3.891 8 O -0.124 6.124 9 C -0.464 4.464 10 H 0.123 0.877 11 C -0.140 4.140 12 N -0.519 5.519 13 Si 0.731 3.269 14 H -0.199 1.199 15 H -0.208 1.208 16 H -0.184 1.184 17 C -0.241 4.241 18 C -0.086 4.086 19 C -0.030 4.030 20 H 0.058 0.942 21 C -0.153 4.153 22 C -0.152 4.152 23 C -0.069 4.069 24 C -0.196 4.196 25 C -0.194 4.194 26 C -0.147 4.147 27 H 0.037 0.963 28 H 0.097 0.903 29 H 0.082 0.918 30 H 0.049 0.951 31 H 0.093 0.907 32 H 0.130 0.870 33 H 0.134 0.866 34 H 0.089 0.911 35 H 0.149 0.851 36 H 0.123 0.877 37 H 0.097 0.903 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.078 0.922 46 H 0.070 0.930 47 H 0.097 0.903 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 9.824 -15.909 15.765 24.457 hybrid contribution -0.234 0.531 0.120 0.593 sum 9.590 -15.378 15.885 24.099 Atomic orbital electron populations 1.22453 0.87578 1.01931 1.00812 1.62169 1.07822 1.13690 1.41476 1.20829 0.99483 0.87057 0.94272 1.19143 0.97141 1.04842 0.95782 1.20439 0.98192 0.97092 0.91655 1.20210 0.97635 1.04613 0.98838 1.19133 0.93174 0.90738 0.86101 1.83573 1.35141 1.62710 1.30933 1.20759 0.89959 1.35883 0.99838 0.87683 1.24466 0.95919 0.95443 0.98207 1.69649 1.17357 1.36948 1.27927 0.86181 0.81636 0.77829 0.81252 1.19888 1.20819 1.18361 1.21234 1.02551 1.06804 0.93465 1.20647 0.95333 0.96128 0.96517 1.22494 0.95051 0.93827 0.91627 0.94205 1.22527 0.94662 0.97148 1.00945 1.22450 0.97438 0.95675 0.99632 1.21134 0.95203 0.95228 0.95313 1.21923 1.00994 0.99965 0.96738 1.21895 1.01003 0.98263 0.98278 1.22358 0.96956 0.93346 1.02007 0.96312 0.90287 0.91753 0.95127 0.90720 0.86975 0.86634 0.91085 0.85091 0.87728 0.90264 0.91968 0.91809 0.91568 0.92806 0.92789 0.92857 0.92846 0.92179 0.93019 0.90336 0.92219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 8.90 60.06 0.53 0.79 16 2 N -0.53 -6.67 4.59 -234.33 -1.08 -7.75 16 3 C 0.11 1.48 5.01 -4.98 -0.02 1.45 16 4 C -0.17 -2.77 4.89 -104.58 -0.51 -3.28 16 5 C -0.05 -0.94 9.69 -39.61 -0.38 -1.33 16 6 C -0.19 -3.86 9.99 -39.40 -0.39 -4.26 16 7 C 0.16 3.73 6.65 -39.11 -0.26 3.47 16 8 O -0.22 -5.81 8.59 0.05 0.00 -5.81 16 9 C -0.39 -11.01 9.95 30.89 0.31 -10.70 16 10 H 0.11 3.04 5.44 -52.49 -0.29 2.75 16 11 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 12 N -0.88 -25.56 13.96 55.48 0.77 -24.79 16 13 Si 0.91 21.81 28.62 -169.99 -4.86 16.95 16 14 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 15 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 16 H -0.26 -6.27 7.11 56.52 0.40 -5.87 16 17 C -0.22 -4.77 9.17 -39.39 -0.36 -5.13 16 18 C -0.07 -1.21 7.89 -39.61 -0.31 -1.52 16 19 C 0.08 0.82 2.57 -66.05 -0.17 0.65 16 20 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 21 C -0.11 -1.08 5.49 -24.73 -0.14 -1.22 16 22 C -0.11 -0.91 5.90 -25.07 -0.15 -1.06 16 23 C -0.07 -0.55 0.94 -153.38 -0.14 -0.70 16 24 C -0.14 -0.98 8.16 37.16 0.30 -0.68 16 25 C -0.14 -1.08 8.15 37.16 0.30 -0.78 16 26 C -0.11 -1.02 4.55 -25.61 -0.12 -1.14 16 27 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.08 1.15 5.88 -51.93 -0.31 0.85 16 29 H 0.06 0.74 6.67 -51.93 -0.35 0.39 16 30 H 0.03 0.40 8.06 -51.93 -0.42 -0.02 16 31 H 0.07 0.92 6.71 -51.93 -0.35 0.57 16 32 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 33 H 0.12 2.16 8.06 -52.48 -0.42 1.74 16 34 H 0.28 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.13 2.98 5.64 -52.49 -0.30 2.68 16 36 H 0.10 1.66 7.98 -52.48 -0.42 1.24 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.56 7.73 -51.93 -0.40 0.16 16 39 H 0.06 0.48 7.83 -51.93 -0.41 0.07 16 40 H 0.07 0.49 7.84 -51.93 -0.41 0.09 16 41 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.05 0.38 8.12 -51.93 -0.42 -0.05 16 43 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.08 0.83 6.94 -51.93 -0.36 0.47 16 48 H 0.06 0.54 7.67 -51.93 -0.40 0.14 16 LS Contribution 372.54 15.07 5.61 5.61 Total: -1.00 -28.73 372.54 -9.34 -38.07 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -8.18 Total: 1.46 kcal Atomic # 6 Polarization: -22.15 SS G_CDS: -1.61 Total: -23.76 kcal Atomic # 7 Polarization: -32.23 SS G_CDS: -0.30 Total: -32.53 kcal Atomic # 8 Polarization: -5.81 SS G_CDS: 0.00 Total: -5.81 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.86 Total: 16.95 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -28.73 -9.34 -38.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796529946.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.964 kcal (2) G-P(sol) polarization free energy of solvation -28.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds