Wall clock time and date at job start Tue Mar 31 2020 07:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46896 * 110.99953 * 2 1 4 4 C 1.50703 * 109.46885 * 293.95072 * 3 2 1 5 5 C 1.38294 * 119.93358 * 269.72752 * 4 3 2 6 6 C 1.38098 * 120.06979 * 179.73052 * 5 4 3 7 7 C 1.38878 * 119.92978 * 0.51649 * 6 5 4 8 8 O 1.35756 * 120.07259 * 179.72600 * 7 6 5 9 9 C 1.34823 * 117.00121 * 174.49118 * 8 7 6 10 10 H 1.07997 * 120.00021 * 5.06080 * 9 8 7 11 11 C 1.38654 * 120.00088 * 185.05903 * 9 8 7 12 12 N 1.31556 * 120.00035 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 119.99906 * 0.02562 * 11 9 8 14 14 H 1.48498 * 109.47318 * 89.99601 * 13 11 9 15 15 H 1.48506 * 109.47137 * 209.99980 * 13 11 9 16 16 H 1.48504 * 109.46883 * 329.99383 * 13 11 9 17 17 C 1.38877 * 119.86237 * 359.76170 * 7 6 5 18 18 C 1.38103 * 119.92758 * 359.97438 * 17 7 6 19 19 C 1.46898 * 111.00189 * 123.95375 * 2 1 3 20 20 H 1.09002 * 110.43657 * 293.50448 * 19 2 1 21 21 C 1.54895 * 110.60166 * 170.88699 * 19 2 1 22 22 C 1.54891 * 102.74917 * 203.32124 * 21 19 2 23 23 C 1.54275 * 104.19604 * 37.94458 * 22 21 19 24 24 C 1.53002 * 110.02985 * 217.10637 * 23 22 21 25 25 C 1.53002 * 110.07489 * 95.69396 * 23 22 21 26 26 C 1.53882 * 106.59554 * 336.38853 * 23 22 21 27 27 H 1.08996 * 109.46918 * 296.04280 * 1 2 3 28 28 H 1.09001 * 109.47246 * 56.05237 * 1 2 3 29 29 H 1.09002 * 109.46717 * 176.04722 * 1 2 3 30 30 H 1.08997 * 109.47619 * 53.95424 * 3 2 1 31 31 H 1.08999 * 109.47023 * 173.95406 * 3 2 1 32 32 H 1.08003 * 119.96939 * 359.97438 * 5 4 3 33 33 H 1.08003 * 120.03939 * 180.27474 * 6 5 4 34 34 H 0.97007 * 119.99941 * 179.97438 * 12 11 9 35 35 H 1.08001 * 120.03618 * 179.97438 * 17 7 6 36 36 H 1.08003 * 119.95994 * 180.02562 * 18 17 7 37 37 H 1.08995 * 110.75373 * 321.63906 * 21 19 2 38 38 H 1.08994 * 110.75286 * 84.82497 * 21 19 2 39 39 H 1.08991 * 110.48733 * 279.26763 * 22 21 19 40 40 H 1.08999 * 110.48578 * 156.61636 * 22 21 19 41 41 H 1.08997 * 109.46770 * 177.16780 * 24 23 22 42 42 H 1.08994 * 109.47107 * 57.16171 * 24 23 22 43 43 H 1.08995 * 109.46694 * 297.15909 * 24 23 22 44 44 H 1.09000 * 109.47142 * 182.12337 * 25 23 22 45 45 H 1.09003 * 109.46665 * 302.11648 * 25 23 22 46 46 H 1.09001 * 109.46893 * 62.11499 * 25 23 22 47 47 H 1.08994 * 110.03078 * 119.28937 * 26 23 22 48 48 H 1.08998 * 110.02908 * 240.71805 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0470 -1.2985 5 6 2.4979 1.9686 -2.3779 6 6 2.1696 2.5820 -3.5708 7 6 0.9784 3.2871 -3.6826 8 8 0.6554 3.8959 -4.8523 9 6 -0.5641 4.4655 -4.9295 10 1 -1.2019 4.4963 -4.0585 11 6 -0.9995 5.0119 -6.1272 12 7 -2.1893 5.5682 -6.2024 13 14 0.1033 4.9581 -7.6339 14 1 -0.1584 3.7099 -8.3946 15 1 -0.1803 6.1327 -8.4972 16 1 1.5256 4.9891 -7.2077 17 6 0.1186 3.3689 -2.5951 18 6 0.4501 2.7487 -1.4065 19 6 1.9955 -0.7660 1.1376 20 1 1.7516 -0.2690 2.0765 21 6 3.5273 -0.9541 1.0058 22 6 3.7924 -2.2138 1.8671 23 6 2.5779 -3.1240 1.5899 24 6 2.1719 -3.8598 2.8685 25 6 2.9175 -4.1325 0.4906 26 6 1.4355 -2.2034 1.1261 27 1 -0.3633 0.4512 0.9233 28 1 -0.3634 0.5739 -0.8525 29 1 -0.3633 -1.0253 -0.0708 30 1 1.5611 1.9274 0.8309 31 1 3.0797 1.3444 0.1082 32 1 3.4262 1.4239 -2.2891 33 1 2.8404 2.5167 -4.4148 34 1 -2.4938 5.9507 -7.0402 35 1 -0.8083 3.9168 -2.6788 36 1 -0.2184 2.8116 -0.5606 37 1 3.8068 -1.1304 -0.0329 38 1 4.0583 -0.0904 1.4059 39 1 3.8385 -1.9507 2.9237 40 1 4.7148 -2.7028 1.5540 41 1 1.2835 -4.4609 2.6751 42 1 1.9560 -3.1339 3.6524 43 1 2.9870 -4.5087 3.1886 44 1 2.0417 -4.7451 0.2764 45 1 3.2172 -3.5992 -0.4116 46 1 3.7354 -4.7714 0.8237 47 1 1.1235 -2.4746 0.1176 48 1 0.5918 -2.2808 1.8119 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796529946.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:54:54 Heat of formation + Delta-G solvation = -29.997927 kcal Electronic energy + Delta-G solvation = -24687.516000 eV Core-core repulsion = 21320.666186 eV Total energy + Delta-G solvation = -3366.849814 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.02697 -40.38004 -38.73311 -36.87193 -34.46381 -32.54710 -31.80435 -31.52730 -29.07309 -28.11523 -27.98314 -27.20524 -25.20434 -23.72551 -23.61073 -21.88621 -20.78027 -19.79271 -19.49287 -19.07408 -17.15708 -16.79474 -16.60659 -16.06063 -15.94888 -15.61573 -15.34146 -15.27823 -14.95906 -14.66927 -14.48201 -14.33057 -14.20237 -14.00155 -13.86545 -13.75091 -13.13893 -13.01016 -12.83635 -12.73161 -12.52567 -12.45641 -12.36947 -12.27223 -11.98168 -11.76191 -11.64537 -11.53594 -11.36391 -11.29920 -11.25873 -11.22934 -10.89464 -9.77450 -9.24629 -8.93607 -8.50163 -6.22540 0.58336 0.63983 1.31086 1.35385 1.51892 2.28083 2.70311 2.96679 3.14345 3.31113 3.59377 3.77608 3.95517 4.02571 4.03623 4.19527 4.30890 4.38617 4.40503 4.48875 4.52655 4.58756 4.60921 4.61128 4.71338 4.75724 4.82543 4.87287 4.87806 4.97466 5.00801 5.03518 5.10085 5.10218 5.18633 5.19536 5.24481 5.27133 5.36877 5.40868 5.46647 5.51964 5.59441 5.63800 5.76999 5.81655 5.91476 6.15725 6.24079 6.33815 6.84370 7.59473 8.61564 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.030488 B = 0.002609 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.183492 B =10727.690590 C =10876.426565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.536 5.536 3 C 0.113 3.887 4 C -0.143 4.143 5 C -0.049 4.049 6 C -0.192 4.192 7 C 0.120 3.880 8 O -0.246 6.246 9 C -0.398 4.398 10 H 0.080 0.920 11 C 0.009 3.991 12 N -0.924 5.924 13 Si 0.971 3.029 14 H -0.266 1.266 15 H -0.267 1.267 16 H -0.263 1.263 17 C -0.237 4.237 18 C -0.065 4.065 19 C 0.078 3.922 20 H 0.043 0.957 21 C -0.113 4.113 22 C -0.110 4.110 23 C -0.067 4.067 24 C -0.137 4.137 25 C -0.136 4.136 26 C -0.106 4.106 27 H 0.027 0.973 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.040 0.960 31 H 0.095 0.905 32 H 0.150 0.850 33 H 0.128 0.872 34 H 0.284 0.716 35 H 0.105 0.895 36 H 0.126 0.874 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.053 0.947 42 H 0.055 0.945 43 H 0.060 0.940 44 H 0.051 0.949 45 H 0.049 0.951 46 H 0.061 0.939 47 H 0.064 0.936 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.313 -17.899 18.403 28.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.260 5.260 3 C -0.014 4.014 4 C -0.144 4.144 5 C -0.067 4.067 6 C -0.211 4.211 7 C 0.071 3.929 8 O -0.154 6.154 9 C -0.475 4.475 10 H 0.097 0.903 11 C -0.189 4.189 12 N -0.565 5.565 13 Si 0.793 3.207 14 H -0.191 1.191 15 H -0.192 1.192 16 H -0.187 1.187 17 C -0.256 4.256 18 C -0.084 4.084 19 C -0.029 4.029 20 H 0.061 0.939 21 C -0.151 4.151 22 C -0.147 4.147 23 C -0.068 4.068 24 C -0.194 4.194 25 C -0.193 4.193 26 C -0.144 4.144 27 H 0.046 0.954 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.058 0.942 31 H 0.113 0.887 32 H 0.168 0.832 33 H 0.146 0.854 34 H 0.094 0.906 35 H 0.123 0.877 36 H 0.144 0.856 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.080 0.920 47 H 0.083 0.917 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.432 -18.003 17.664 28.119 hybrid contribution -0.954 0.975 -0.131 1.370 sum 11.478 -17.027 17.533 27.002 Atomic orbital electron populations 1.22406 0.87843 1.02217 1.00162 1.62127 1.07696 1.13150 1.43041 1.20842 1.00863 0.87435 0.92262 1.19615 0.95479 1.02213 0.97070 1.20876 0.99461 0.95990 0.90384 1.20521 0.96393 1.03714 1.00500 1.19669 0.95013 0.92494 0.85750 1.83514 1.34231 1.64863 1.32751 1.20696 0.90796 1.36527 0.99466 0.90281 1.25290 0.97365 0.95219 1.01061 1.69733 1.19033 1.38733 1.29030 0.85209 0.79272 0.78526 0.77648 1.19105 1.19155 1.18687 1.21223 1.01799 1.07705 0.94883 1.20867 0.96413 0.95398 0.95723 1.22566 0.95841 0.93826 0.90716 0.93888 1.22516 0.93700 0.98173 1.00721 1.22435 0.97561 0.94922 0.99832 1.21134 0.94773 0.95119 0.95761 1.21898 1.01306 1.00031 0.96162 1.21878 1.01307 0.98271 0.97845 1.22333 0.97642 0.93116 1.01333 0.95404 0.92652 0.90869 0.94229 0.88683 0.83192 0.85445 0.90592 0.87664 0.85587 0.91242 0.91211 0.91010 0.90868 0.92830 0.92584 0.92054 0.92988 0.93219 0.92036 0.91740 0.91902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 8.90 127.69 1.14 1.64 16 2 N -0.54 -11.95 4.59 -895.29 -4.11 -16.06 16 3 C 0.11 2.60 5.01 85.56 0.43 3.03 16 4 C -0.14 -4.33 4.89 -19.84 -0.10 -4.43 16 5 C -0.05 -1.53 9.69 22.25 0.22 -1.31 16 6 C -0.19 -7.47 9.99 22.39 0.22 -7.25 16 7 C 0.12 5.71 6.65 22.58 0.15 5.86 16 8 O -0.25 -13.62 8.59 -22.73 -0.20 -13.81 16 9 C -0.40 -23.90 9.95 67.92 0.68 -23.22 16 10 H 0.08 4.98 5.44 -2.91 -0.02 4.96 16 11 C 0.01 0.52 5.49 84.83 0.47 0.98 16 12 N -0.92 -55.95 13.96 21.61 0.30 -55.65 16 13 Si 0.97 46.09 28.62 68.60 1.96 48.06 16 14 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 15 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 16 H -0.26 -12.43 7.11 99.48 0.71 -11.72 16 17 C -0.24 -10.61 9.17 22.39 0.21 -10.41 16 18 C -0.07 -2.30 7.89 22.25 0.18 -2.13 16 19 C 0.08 1.39 2.57 45.99 0.12 1.51 16 20 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 21 C -0.11 -1.73 5.49 31.89 0.17 -1.56 16 22 C -0.11 -1.38 5.90 31.67 0.19 -1.19 16 23 C -0.07 -0.90 0.94 -51.45 -0.05 -0.95 16 24 C -0.14 -1.54 8.16 71.98 0.59 -0.96 16 25 C -0.14 -1.84 8.15 71.98 0.59 -1.26 16 26 C -0.11 -1.74 4.55 31.32 0.14 -1.60 16 27 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.05 1.55 5.88 -2.39 -0.01 1.53 16 29 H 0.07 1.56 6.67 -2.39 -0.02 1.54 16 30 H 0.04 0.88 8.06 -2.39 -0.02 0.86 16 31 H 0.09 1.88 6.71 -2.39 -0.02 1.86 16 32 H 0.15 3.64 8.06 -2.91 -0.02 3.61 16 33 H 0.13 4.59 8.06 -2.91 -0.02 4.57 16 34 H 0.28 15.77 8.31 -92.70 -0.77 15.00 16 35 H 0.11 5.21 5.64 -2.91 -0.02 5.19 16 36 H 0.13 3.85 7.98 -2.91 -0.02 3.83 16 37 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.07 0.97 7.73 -2.39 -0.02 0.95 16 39 H 0.07 0.81 7.83 -2.39 -0.02 0.79 16 40 H 0.07 0.84 7.84 -2.39 -0.02 0.82 16 41 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.06 0.62 8.12 -2.39 -0.02 0.60 16 43 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.06 1.25 6.94 -2.39 -0.02 1.23 16 48 H 0.06 0.98 7.67 -2.39 -0.02 0.96 16 Total: -1.00 -65.03 372.54 4.21 -60.82 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: 0.92 Total: 19.88 kcal Atomic # 6 Polarization: -48.56 SS G_CDS: 5.33 Total: -43.23 kcal Atomic # 7 Polarization: -67.90 SS G_CDS: -3.81 Total: -71.71 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: -0.20 Total: -13.81 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 1.96 Total: 48.06 kcal Total: -65.03 4.21 -60.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796529946.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.821 kcal (2) G-P(sol) polarization free energy of solvation -65.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds