Wall clock time and date at job start Tue Mar 31 2020 08:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47026 * 248.46221 * 3 2 1 5 5 C 1.36812 * 119.99931 * 261.49372 * 4 3 2 6 6 H 1.08003 * 120.00096 * 202.17340 * 5 4 3 7 7 C 1.39075 * 120.00103 * 22.17438 * 5 4 3 8 8 N 1.31346 * 120.00141 * 18.16304 * 7 5 4 9 9 Si 1.86808 * 120.00005 * 198.16231 * 7 5 4 10 10 H 1.48500 * 109.46922 * 0.02562 * 9 7 5 11 11 H 1.48492 * 109.47060 * 120.00059 * 9 7 5 12 12 H 1.48495 * 109.46938 * 240.00047 * 9 7 5 13 13 C 1.34770 * 119.99894 * 81.49136 * 4 3 2 14 14 O 1.21669 * 119.99977 * 180.02562 * 13 4 3 15 15 C 1.46956 * 120.00365 * 359.97438 * 13 4 3 16 16 C 1.33118 * 120.00157 * 194.58662 * 15 13 4 17 17 C 1.51274 * 120.84965 * 187.43560 * 16 15 13 18 18 C 1.53233 * 108.69336 * 231.41757 * 17 16 15 19 19 C 1.52957 * 109.40546 * 305.27695 * 18 17 16 20 20 C 1.53001 * 109.41178 * 183.63248 * 19 18 17 21 21 C 1.53002 * 109.46896 * 59.99854 * 20 19 18 22 22 C 1.52994 * 109.47100 * 179.97438 * 20 19 18 23 23 C 1.52994 * 109.47304 * 299.99947 * 20 19 18 24 24 C 1.52955 * 109.81772 * 63.60140 * 19 18 17 25 25 C 1.51669 * 121.10231 * 7.59239 * 16 15 13 26 26 H 4.40645 * 5.51396 * 179.97438 * 4 1 2 27 27 H 1.09000 * 109.46810 * 128.46607 * 3 2 1 28 28 H 1.08996 * 109.46887 * 8.45996 * 3 2 1 29 29 H 0.96999 * 120.00168 * 180.02562 * 8 7 5 30 30 H 1.08004 * 119.99544 * 14.59008 * 15 13 4 31 31 H 1.08993 * 109.62794 * 111.60612 * 17 16 15 32 32 H 1.09005 * 109.62135 * 351.22573 * 17 16 15 33 33 H 1.09004 * 109.48013 * 65.25578 * 18 17 16 34 34 H 1.08995 * 109.47976 * 185.27624 * 18 17 16 35 35 H 1.08999 * 109.41046 * 303.48829 * 19 18 17 36 36 H 1.09000 * 109.46987 * 60.00170 * 21 20 19 37 37 H 1.09001 * 109.47040 * 180.02562 * 21 20 19 38 38 H 1.09002 * 109.47095 * 299.99677 * 21 20 19 39 39 H 1.09003 * 109.46764 * 60.00328 * 22 20 19 40 40 H 1.09002 * 109.47463 * 179.97438 * 22 20 19 41 41 H 1.09000 * 109.47645 * 300.00357 * 22 20 19 42 42 H 1.09002 * 109.47383 * 59.99896 * 23 20 19 43 43 H 1.09001 * 109.47313 * 179.97438 * 23 20 19 44 44 H 1.09003 * 109.47096 * 300.00000 * 23 20 19 45 45 H 1.08990 * 109.48736 * 56.38050 * 24 19 18 46 46 H 1.09005 * 109.48132 * 176.42586 * 24 19 18 47 47 H 1.09000 * 109.55474 * 8.86327 * 25 16 15 48 48 H 1.09004 * 109.75089 * 248.45274 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1342 0.5079 1.2848 5 6 3.5268 1.8134 1.4002 6 1 4.2007 2.1067 2.1916 7 6 3.0582 2.7628 0.4984 8 7 1.9916 2.5109 -0.2255 9 14 3.9458 4.3965 0.3166 10 1 5.1101 4.4324 1.2376 11 1 4.4175 4.5505 -1.0830 12 1 3.0157 5.5049 0.6503 13 6 3.1963 -0.3114 2.3530 14 8 3.6012 0.1100 3.4202 15 6 2.7740 -1.7135 2.2293 16 6 2.5565 -2.4421 3.3220 17 6 2.2849 -3.9269 3.2229 18 6 1.0093 -4.2463 4.0097 19 6 1.1531 -3.7301 5.4423 20 6 -0.0820 -4.1283 6.2527 21 6 -0.2112 -5.6528 6.2696 22 6 0.0607 -3.6131 7.6862 23 6 -1.3304 -3.5178 5.6128 24 6 1.2841 -2.2062 5.4337 25 6 2.5700 -1.8100 4.7006 26 1 -1.0501 0.0001 -0.0002 27 1 3.0091 0.6401 -0.8046 28 1 3.0098 -1.0156 -0.1512 29 1 1.6650 3.1729 -0.8547 30 1 2.6401 -2.1528 1.2518 31 1 3.1233 -4.4814 3.6441 32 1 2.1498 -4.2054 2.1777 33 1 0.1571 -3.7622 3.5326 34 1 0.8526 -5.3248 4.0255 35 1 2.0416 -4.1677 5.8975 36 1 0.6782 -6.0877 6.7255 37 1 -1.0914 -5.9364 6.8465 38 1 -0.3128 -6.0201 5.2484 39 1 0.1529 -2.5271 7.6744 40 1 -0.8194 -3.8964 8.2635 41 1 0.9501 -4.0484 8.1419 42 1 -1.4320 -3.8852 4.5916 43 1 -2.2105 -3.8018 6.1899 44 1 -1.2384 -2.4317 5.6007 45 1 0.4255 -1.7704 4.9230 46 1 1.3224 -1.8389 6.4592 47 1 2.6172 -0.7252 4.6042 48 1 3.4351 -2.1656 5.2605 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798800417.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:47:51 Heat of formation + Delta-G solvation = 25.822293 kcal Electronic energy + Delta-G solvation = -25648.560560 eV Core-core repulsion = 22284.131292 eV Total energy + Delta-G solvation = -3364.429268 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.67567 -38.53929 -35.92230 -34.83707 -32.20071 -31.24699 -30.95942 -30.79511 -27.36473 -27.30988 -26.76331 -26.13985 -24.32963 -22.43537 -21.71091 -19.76789 -18.36916 -17.94918 -17.31295 -16.58265 -16.20483 -15.38969 -14.71406 -14.43217 -14.32186 -14.13271 -14.06921 -13.87695 -13.65597 -13.12971 -12.77628 -12.74612 -12.39914 -12.28049 -12.11609 -12.01344 -11.83834 -11.70529 -11.62337 -11.42545 -11.08629 -11.03112 -10.95428 -10.83940 -10.49371 -10.45184 -10.31785 -10.23684 -9.88353 -9.72794 -9.32778 -9.28753 -8.84129 -8.35987 -8.01083 -7.76546 -6.33474 -3.85687 2.23047 3.16804 3.25340 3.31938 3.78111 4.06146 4.19252 4.37976 4.68564 4.72419 4.79704 4.96254 5.09041 5.12646 5.30001 5.32445 5.46692 5.50624 5.54171 5.58659 5.61148 5.64136 5.70858 5.75328 5.77145 5.87547 5.94128 5.96802 5.98378 6.01830 6.08564 6.15980 6.16923 6.24756 6.35213 6.35971 6.40137 6.47794 6.53022 6.74394 6.75114 6.89002 7.04968 7.20856 7.40109 7.55242 8.14377 8.46666 8.84051 9.16832 9.37813 9.98636 10.67232 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.022362 B = 0.003584 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.824317 B = 7810.591360 C = 8074.781653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C -0.112 4.112 3 C 0.232 3.768 4 N -0.432 5.432 5 C -0.311 4.311 6 H 0.104 0.896 7 C 0.031 3.969 8 N -0.860 5.860 9 Si 0.922 3.078 10 H -0.267 1.267 11 H -0.280 1.280 12 H -0.282 1.282 13 C 0.478 3.522 14 O -0.579 6.579 15 C -0.191 4.191 16 C -0.069 4.069 17 C -0.085 4.085 18 C -0.112 4.112 19 C -0.075 4.075 20 C -0.065 4.065 21 C -0.142 4.142 22 C -0.144 4.144 23 C -0.145 4.145 24 C -0.113 4.113 25 C -0.112 4.112 26 H 0.198 0.802 27 H 0.108 0.892 28 H 0.062 0.938 29 H 0.268 0.732 30 H 0.112 0.888 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.052 0.948 37 H 0.049 0.951 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.049 0.951 41 H 0.052 0.948 42 H 0.057 0.943 43 H 0.048 0.952 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.062 0.938 47 H 0.125 0.875 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.481 -14.004 6.212 15.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 C -0.113 4.113 3 C 0.109 3.891 4 N -0.148 5.148 5 C -0.438 4.438 6 H 0.122 0.878 7 C -0.174 4.174 8 N -0.498 5.498 9 Si 0.748 3.252 10 H -0.192 1.192 11 H -0.206 1.206 12 H -0.208 1.208 13 C 0.271 3.729 14 O -0.466 6.466 15 C -0.212 4.212 16 C -0.072 4.072 17 C -0.122 4.122 18 C -0.149 4.149 19 C -0.094 4.094 20 C -0.065 4.065 21 C -0.199 4.199 22 C -0.201 4.201 23 C -0.202 4.202 24 C -0.150 4.150 25 C -0.148 4.148 26 H 0.215 0.785 27 H 0.126 0.874 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.130 0.870 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.067 0.933 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.080 0.920 47 H 0.142 0.858 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.356 -13.647 6.548 15.751 hybrid contribution -0.122 0.852 -0.456 0.974 sum -4.478 -12.794 6.092 14.861 Atomic orbital electron populations 1.24240 0.95346 1.06112 1.02328 1.23176 0.94344 0.95471 0.98317 1.18251 0.84266 0.97349 0.89252 1.43588 1.54513 1.09925 1.06790 1.19705 1.25875 0.82725 1.15532 0.87846 1.25369 0.95133 0.99502 0.97395 1.70036 1.19064 1.35905 1.24791 0.85938 0.79639 0.81462 0.78147 1.19156 1.20626 1.20845 1.18189 0.84568 0.86307 0.83862 1.90430 1.52052 1.77723 1.26429 1.22557 1.05368 0.95355 0.97930 1.22368 0.95480 0.93941 0.95377 1.20813 0.97903 0.93151 1.00306 1.21704 0.97760 1.00223 0.95241 1.21178 0.96768 0.96536 0.94909 1.20552 0.95616 0.95075 0.95292 1.21933 1.01163 0.95171 1.01681 1.21934 1.01097 1.01564 0.95472 1.21972 0.96447 1.01314 1.00511 1.21758 0.98733 0.94375 1.00134 1.21518 0.95987 1.05690 0.91590 0.78475 0.87433 0.91966 0.92143 0.87032 0.91011 0.91624 0.91623 0.91935 0.91525 0.92918 0.93150 0.92382 0.92097 0.93166 0.92892 0.92420 0.93316 0.92149 0.92033 0.91967 0.85760 0.92014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.51 19.25 29.55 0.57 -4.94 16 2 C -0.11 -2.53 11.26 -37.12 -0.42 -2.95 16 3 C 0.23 5.21 4.82 -6.83 -0.03 5.17 16 4 N -0.43 -11.02 2.60 -119.33 -0.31 -11.33 16 5 C -0.31 -8.53 9.25 -15.02 -0.14 -8.67 16 6 H 0.10 2.98 7.43 -52.48 -0.39 2.59 16 7 C 0.03 0.80 4.90 -17.45 -0.09 0.71 16 8 N -0.86 -22.63 9.58 55.50 0.53 -22.10 16 9 Si 0.92 20.42 29.59 -169.99 -5.03 15.38 16 10 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 11 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 13 C 0.48 11.83 7.27 -12.73 -0.09 11.73 16 14 O -0.58 -15.72 13.02 5.22 0.07 -15.65 16 15 C -0.19 -3.82 8.62 -37.83 -0.33 -4.15 16 16 C -0.07 -1.21 5.42 -100.37 -0.54 -1.75 16 17 C -0.08 -1.14 6.03 -27.48 -0.17 -1.30 16 18 C -0.11 -1.33 4.50 -26.63 -0.12 -1.45 16 19 C -0.08 -0.90 1.45 -90.66 -0.13 -1.03 16 20 C -0.07 -0.67 0.57 -154.51 -0.09 -0.76 16 21 C -0.14 -1.28 8.12 37.16 0.30 -0.98 16 22 C -0.14 -1.42 8.12 37.15 0.30 -1.12 16 23 C -0.15 -1.54 7.77 37.15 0.29 -1.25 16 24 C -0.11 -1.64 4.50 -26.63 -0.12 -1.76 16 25 C -0.11 -1.99 5.36 -27.29 -0.15 -2.14 16 26 H 0.20 3.41 7.80 -54.09 -0.42 2.99 16 27 H 0.11 2.52 6.50 -51.93 -0.34 2.18 16 28 H 0.06 1.18 6.45 -51.93 -0.34 0.84 16 29 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 30 H 0.11 2.01 6.25 -52.48 -0.33 1.68 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.83 7.91 -51.93 -0.41 0.42 16 33 H 0.07 0.84 6.63 -51.93 -0.34 0.50 16 34 H 0.06 0.64 6.24 -51.93 -0.32 0.31 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.51 6.35 -51.93 -0.33 0.18 16 39 H 0.06 0.64 6.33 -51.93 -0.33 0.31 16 40 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.61 6.51 -51.93 -0.34 0.27 16 43 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.70 6.51 -51.93 -0.34 0.36 16 45 H 0.06 0.96 6.63 -51.93 -0.34 0.62 16 46 H 0.06 0.85 6.22 -51.93 -0.32 0.53 16 47 H 0.13 2.76 4.75 -52.66 -0.25 2.51 16 48 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 365.29 15.07 5.50 5.50 Total: -1.00 -29.73 365.29 -7.84 -37.57 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -7.66 Total: 7.25 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: -0.95 Total: -16.64 kcal Atomic # 7 Polarization: -33.65 SS G_CDS: 0.22 Total: -33.43 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: 0.07 Total: -15.65 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.03 Total: 15.38 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.73 -7.84 -37.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798800417.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.397 kcal (2) G-P(sol) polarization free energy of solvation -29.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds