Wall clock time and date at job start Tue Mar 31 2020 08:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47026 * 248.46221 * 3 2 1 5 5 C 1.36812 * 119.99931 * 261.49372 * 4 3 2 6 6 H 1.08003 * 120.00096 * 202.17340 * 5 4 3 7 7 C 1.39075 * 120.00103 * 22.17438 * 5 4 3 8 8 N 1.31346 * 120.00141 * 18.16304 * 7 5 4 9 9 Si 1.86808 * 120.00005 * 198.16231 * 7 5 4 10 10 H 1.48500 * 109.46922 * 0.02562 * 9 7 5 11 11 H 1.48492 * 109.47060 * 120.00059 * 9 7 5 12 12 H 1.48495 * 109.46938 * 240.00047 * 9 7 5 13 13 C 1.34770 * 119.99894 * 81.49136 * 4 3 2 14 14 O 1.21669 * 119.99977 * 180.02562 * 13 4 3 15 15 C 1.46956 * 120.00365 * 359.97438 * 13 4 3 16 16 C 1.33118 * 120.00157 * 194.58662 * 15 13 4 17 17 C 1.51274 * 120.84965 * 187.43560 * 16 15 13 18 18 C 1.53233 * 108.69336 * 231.41757 * 17 16 15 19 19 C 1.52957 * 109.40546 * 305.27695 * 18 17 16 20 20 C 1.53001 * 109.41178 * 183.63248 * 19 18 17 21 21 C 1.53002 * 109.46896 * 59.99854 * 20 19 18 22 22 C 1.52994 * 109.47100 * 179.97438 * 20 19 18 23 23 C 1.52994 * 109.47304 * 299.99947 * 20 19 18 24 24 C 1.52955 * 109.81772 * 63.60140 * 19 18 17 25 25 C 1.51669 * 121.10231 * 7.59239 * 16 15 13 26 26 H 4.40645 * 5.51396 * 179.97438 * 4 1 2 27 27 H 1.09000 * 109.46810 * 128.46607 * 3 2 1 28 28 H 1.08996 * 109.46887 * 8.45996 * 3 2 1 29 29 H 0.96999 * 120.00168 * 180.02562 * 8 7 5 30 30 H 1.08004 * 119.99544 * 14.59008 * 15 13 4 31 31 H 1.08993 * 109.62794 * 111.60612 * 17 16 15 32 32 H 1.09005 * 109.62135 * 351.22573 * 17 16 15 33 33 H 1.09004 * 109.48013 * 65.25578 * 18 17 16 34 34 H 1.08995 * 109.47976 * 185.27624 * 18 17 16 35 35 H 1.08999 * 109.41046 * 303.48829 * 19 18 17 36 36 H 1.09000 * 109.46987 * 60.00170 * 21 20 19 37 37 H 1.09001 * 109.47040 * 180.02562 * 21 20 19 38 38 H 1.09002 * 109.47095 * 299.99677 * 21 20 19 39 39 H 1.09003 * 109.46764 * 60.00328 * 22 20 19 40 40 H 1.09002 * 109.47463 * 179.97438 * 22 20 19 41 41 H 1.09000 * 109.47645 * 300.00357 * 22 20 19 42 42 H 1.09002 * 109.47383 * 59.99896 * 23 20 19 43 43 H 1.09001 * 109.47313 * 179.97438 * 23 20 19 44 44 H 1.09003 * 109.47096 * 300.00000 * 23 20 19 45 45 H 1.08990 * 109.48736 * 56.38050 * 24 19 18 46 46 H 1.09005 * 109.48132 * 176.42586 * 24 19 18 47 47 H 1.09000 * 109.55474 * 8.86327 * 25 16 15 48 48 H 1.09004 * 109.75089 * 248.45274 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1342 0.5079 1.2848 5 6 3.5268 1.8134 1.4002 6 1 4.2007 2.1067 2.1916 7 6 3.0582 2.7628 0.4984 8 7 1.9916 2.5109 -0.2255 9 14 3.9458 4.3965 0.3166 10 1 5.1101 4.4324 1.2376 11 1 4.4175 4.5505 -1.0830 12 1 3.0157 5.5049 0.6503 13 6 3.1963 -0.3114 2.3530 14 8 3.6012 0.1100 3.4202 15 6 2.7740 -1.7135 2.2293 16 6 2.5565 -2.4421 3.3220 17 6 2.2849 -3.9269 3.2229 18 6 1.0093 -4.2463 4.0097 19 6 1.1531 -3.7301 5.4423 20 6 -0.0820 -4.1283 6.2527 21 6 -0.2112 -5.6528 6.2696 22 6 0.0607 -3.6131 7.6862 23 6 -1.3304 -3.5178 5.6128 24 6 1.2841 -2.2062 5.4337 25 6 2.5700 -1.8100 4.7006 26 1 -1.0501 0.0001 -0.0002 27 1 3.0091 0.6401 -0.8046 28 1 3.0098 -1.0156 -0.1512 29 1 1.6650 3.1729 -0.8547 30 1 2.6401 -2.1528 1.2518 31 1 3.1233 -4.4814 3.6441 32 1 2.1498 -4.2054 2.1777 33 1 0.1571 -3.7622 3.5326 34 1 0.8526 -5.3248 4.0255 35 1 2.0416 -4.1677 5.8975 36 1 0.6782 -6.0877 6.7255 37 1 -1.0914 -5.9364 6.8465 38 1 -0.3128 -6.0201 5.2484 39 1 0.1529 -2.5271 7.6744 40 1 -0.8194 -3.8964 8.2635 41 1 0.9501 -4.0484 8.1419 42 1 -1.4320 -3.8852 4.5916 43 1 -2.2105 -3.8018 6.1899 44 1 -1.2384 -2.4317 5.6007 45 1 0.4255 -1.7704 4.9230 46 1 1.3224 -1.8389 6.4592 47 1 2.6172 -0.7252 4.6042 48 1 3.4351 -2.1656 5.2605 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798800417.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:47:50 Heat of formation + Delta-G solvation = 11.828977 kcal Electronic energy + Delta-G solvation = -25649.167356 eV Core-core repulsion = 22284.131292 eV Total energy + Delta-G solvation = -3365.036064 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.97784 -40.09641 -37.44173 -36.40244 -34.07869 -33.02725 -32.30498 -31.99161 -28.51264 -28.15225 -28.07150 -27.70619 -26.06282 -23.60878 -22.99320 -21.27566 -19.77723 -19.31921 -18.82016 -18.33551 -18.00871 -16.55243 -16.44534 -16.04278 -15.79464 -15.19453 -15.15879 -15.07963 -14.96280 -14.51531 -14.27190 -14.02510 -13.93929 -13.65576 -13.49682 -13.43644 -12.99954 -12.83272 -12.73042 -12.56862 -12.52335 -12.45456 -12.26900 -12.16383 -11.97834 -11.74868 -11.55544 -11.22075 -11.17759 -11.12789 -11.00806 -10.77834 -10.58716 -10.01779 -9.72033 -9.68048 -8.31723 -5.93055 0.67411 1.39338 1.41112 1.54669 2.03504 2.30967 2.39058 2.54051 3.14767 3.26765 3.78164 3.79834 3.85517 3.89315 4.04488 4.07325 4.25417 4.41143 4.45056 4.46274 4.52335 4.59220 4.67626 4.72362 4.75603 4.86424 4.88271 4.93800 4.98389 5.01176 5.09241 5.11081 5.15227 5.17867 5.22156 5.28055 5.30085 5.34647 5.41383 5.41952 5.44908 5.55206 5.63287 5.69431 5.75905 5.86627 6.18722 6.50577 7.13997 7.17933 7.44935 8.06235 8.67129 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.022362 B = 0.003584 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.824317 B = 7810.591360 C = 8074.781653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.151 4.151 3 C 0.236 3.764 4 N -0.448 5.448 5 C -0.349 4.349 6 H 0.074 0.926 7 C 0.001 3.999 8 N -0.873 5.873 9 Si 0.985 3.015 10 H -0.274 1.274 11 H -0.264 1.264 12 H -0.280 1.280 13 C 0.468 3.532 14 O -0.619 6.619 15 C -0.222 4.222 16 C -0.042 4.042 17 C -0.082 4.082 18 C -0.108 4.108 19 C -0.070 4.070 20 C -0.062 4.062 21 C -0.139 4.139 22 C -0.144 4.144 23 C -0.146 4.146 24 C -0.104 4.104 25 C -0.116 4.116 26 H 0.232 0.768 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.272 0.728 30 H 0.133 0.867 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.057 0.943 34 H 0.092 0.908 35 H 0.074 0.926 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.047 0.953 40 H 0.060 0.940 41 H 0.057 0.943 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.041 0.959 45 H 0.046 0.954 46 H 0.066 0.934 47 H 0.078 0.922 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.709 -16.561 6.215 18.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.152 4.152 3 C 0.113 3.887 4 N -0.164 5.164 5 C -0.477 4.477 6 H 0.092 0.908 7 C -0.202 4.202 8 N -0.510 5.510 9 Si 0.809 3.191 10 H -0.199 1.199 11 H -0.189 1.189 12 H -0.206 1.206 13 C 0.262 3.738 14 O -0.508 6.508 15 C -0.243 4.243 16 C -0.045 4.045 17 C -0.119 4.119 18 C -0.145 4.145 19 C -0.089 4.089 20 C -0.062 4.062 21 C -0.196 4.196 22 C -0.202 4.202 23 C -0.203 4.203 24 C -0.141 4.141 25 C -0.153 4.153 26 H 0.249 0.751 27 H 0.109 0.891 28 H 0.112 0.888 29 H 0.082 0.918 30 H 0.151 0.849 31 H 0.111 0.889 32 H 0.100 0.900 33 H 0.075 0.925 34 H 0.111 0.889 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.060 0.940 45 H 0.064 0.936 46 H 0.085 0.915 47 H 0.096 0.904 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.599 -16.222 6.527 18.360 hybrid contribution 0.210 1.615 -0.326 1.661 sum -5.389 -14.606 6.201 16.758 Atomic orbital electron populations 1.25101 0.96316 1.04568 1.00633 1.23456 0.94978 0.96940 0.99855 1.18269 0.84630 0.98445 0.87314 1.43767 1.55050 1.09486 1.08119 1.19592 1.27189 0.84611 1.16279 0.90834 1.26045 0.95456 1.02195 0.96501 1.70125 1.19378 1.36830 1.24686 0.85007 0.78180 0.77348 0.78548 1.19862 1.18872 1.20602 1.19045 0.83487 0.88126 0.83153 1.90418 1.53540 1.79034 1.27834 1.22409 1.08997 0.93070 0.99835 1.22881 0.91143 0.96278 0.94163 1.20943 0.99493 0.89474 1.02019 1.21714 0.96396 1.01999 0.94416 1.21143 0.98122 0.93889 0.95725 1.20520 0.94334 0.96389 0.94941 1.21903 1.01942 0.93453 1.02329 1.21941 1.01923 1.00741 0.95558 1.21977 0.97257 1.00166 1.00905 1.21672 0.95978 0.96908 0.99580 1.21419 0.98130 1.02887 0.92868 0.75137 0.89081 0.88847 0.91823 0.84934 0.88907 0.90018 0.92456 0.88918 0.90791 0.92274 0.92295 0.91801 0.93422 0.92073 0.92344 0.92310 0.92138 0.93974 0.93565 0.91505 0.90446 0.91408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.17 19.25 74.32 1.43 -8.74 16 2 C -0.15 -6.86 11.26 31.13 0.35 -6.51 16 3 C 0.24 10.81 4.82 84.57 0.41 11.22 16 4 N -0.45 -23.90 2.60 -649.69 -1.69 -25.59 16 5 C -0.35 -20.21 9.25 84.12 0.78 -19.44 16 6 H 0.07 4.57 7.43 -2.91 -0.02 4.55 16 7 C 0.00 0.08 4.90 84.97 0.42 0.50 16 8 N -0.87 -46.58 9.58 21.68 0.21 -46.37 16 9 Si 0.99 42.89 29.59 68.60 2.03 44.92 16 10 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 11 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 12 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 13 C 0.47 24.29 7.27 86.53 0.63 24.92 16 14 O -0.62 -35.91 13.02 -4.25 -0.06 -35.96 16 15 C -0.22 -8.97 8.62 23.41 0.20 -8.76 16 16 C -0.04 -1.44 5.42 -17.11 -0.09 -1.54 16 17 C -0.08 -1.95 6.03 30.11 0.18 -1.77 16 18 C -0.11 -2.20 4.50 30.66 0.14 -2.06 16 19 C -0.07 -1.51 1.45 -10.82 -0.02 -1.52 16 20 C -0.06 -1.10 0.57 -52.18 -0.03 -1.13 16 21 C -0.14 -1.95 8.12 71.98 0.58 -1.36 16 22 C -0.14 -2.55 8.12 71.98 0.58 -1.97 16 23 C -0.15 -2.80 7.77 71.98 0.56 -2.24 16 24 C -0.10 -3.00 4.50 30.66 0.14 -2.86 16 25 C -0.12 -4.24 5.36 30.24 0.16 -4.08 16 26 H 0.23 7.41 7.80 -4.42 -0.03 7.37 16 27 H 0.09 4.40 6.50 -2.39 -0.02 4.39 16 28 H 0.09 3.55 6.45 -2.39 -0.02 3.54 16 29 H 0.27 13.66 8.31 -92.71 -0.77 12.89 16 30 H 0.13 4.67 6.25 -2.91 -0.02 4.65 16 31 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.08 1.74 7.91 -2.38 -0.02 1.72 16 33 H 0.06 1.30 6.63 -2.38 -0.02 1.28 16 34 H 0.09 1.42 6.24 -2.39 -0.01 1.41 16 35 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.06 0.83 6.35 -2.39 -0.02 0.81 16 39 H 0.05 0.95 6.33 -2.39 -0.02 0.94 16 40 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.06 1.11 6.51 -2.39 -0.02 1.09 16 43 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.04 0.95 6.51 -2.39 -0.02 0.93 16 45 H 0.05 1.47 6.63 -2.39 -0.02 1.45 16 46 H 0.07 1.84 6.22 -2.38 -0.01 1.83 16 47 H 0.08 3.67 4.75 -13.96 -0.07 3.60 16 48 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -68.38 365.29 7.80 -60.58 By element: Atomic # 1 Polarization: 28.89 SS G_CDS: 0.88 Total: 29.78 kcal Atomic # 6 Polarization: -33.78 SS G_CDS: 6.42 Total: -27.35 kcal Atomic # 7 Polarization: -70.49 SS G_CDS: -1.48 Total: -71.97 kcal Atomic # 8 Polarization: -35.91 SS G_CDS: -0.06 Total: -35.96 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -68.38 7.80 -60.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798800417.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.414 kcal (2) G-P(sol) polarization free energy of solvation -68.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds