Wall clock time and date at job start Tue Mar 31 2020 09:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46870 * 2 1 4 4 C 1.53004 * 109.46870 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46870 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.46998 * 55.00626 * 5 4 3 7 7 C 1.52991 * 109.47361 * 295.00100 * 5 4 3 8 8 C 1.50702 * 109.46899 * 174.99983 * 5 4 3 9 9 O 1.21288 * 120.00023 * 12.30421 * 8 5 4 10 10 N 1.34772 * 119.99925 * 192.30255 * 8 5 4 11 11 C 1.46497 * 120.00271 * 5.57800 * 10 8 5 12 12 C 1.50701 * 109.47114 * 86.03726 * 11 10 8 13 13 H 1.08005 * 119.99893 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00310 * 179.97438 * 12 11 10 15 15 N 1.31520 * 119.99751 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00161 * 180.02562 * 14 12 11 17 17 H 1.48492 * 109.47066 * 60.00405 * 16 14 12 18 18 H 1.48500 * 109.46911 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47102 * 300.00311 * 16 14 12 20 20 C 1.39922 * 120.00062 * 185.57543 * 10 8 5 21 21 C 1.38878 * 120.06759 * 7.47413 * 20 10 8 22 22 C 1.38117 * 119.92493 * 179.78824 * 21 20 10 23 23 C 1.38275 * 120.07476 * 0.48911 * 22 21 20 24 24 C 1.50705 * 119.93280 * 179.76609 * 23 22 21 25 25 C 1.38289 * 120.13832 * 359.74222 * 23 22 21 26 26 C 1.38107 * 120.07067 * 0.02562 * 25 23 22 27 27 H 1.09002 * 109.46882 * 299.99389 * 1 2 3 28 28 H 1.08997 * 109.47207 * 59.99887 * 1 2 3 29 29 H 1.09008 * 109.47061 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46595 * 240.00155 * 2 1 3 31 31 H 1.09000 * 109.46889 * 120.00511 * 2 1 3 32 32 H 1.09002 * 109.46870 * 60.00603 * 3 2 1 33 33 H 1.08997 * 109.47298 * 300.00057 * 3 2 1 34 34 H 1.09003 * 109.46595 * 60.00155 * 4 3 2 35 35 H 1.09000 * 109.46889 * 300.00511 * 4 3 2 36 36 H 1.09002 * 109.47142 * 295.27964 * 7 5 4 37 37 H 1.09003 * 109.47525 * 175.27463 * 7 5 4 38 38 H 1.09005 * 109.47371 * 55.27853 * 7 5 4 39 39 H 1.08996 * 109.47468 * 206.04093 * 11 10 8 40 40 H 1.09005 * 109.47192 * 326.04130 * 11 10 8 41 41 H 0.96994 * 119.99701 * 180.02562 * 15 14 12 42 42 H 1.07994 * 120.03789 * 0.02562 * 21 20 10 43 43 H 1.08005 * 119.96124 * 180.23030 * 22 21 20 44 44 H 1.08994 * 109.46996 * 269.97389 * 24 23 22 45 45 H 1.09001 * 109.46640 * 29.97728 * 24 23 22 46 46 H 1.08998 * 109.46838 * 149.97751 * 24 23 22 47 47 H 1.08005 * 119.96489 * 180.02562 * 25 23 22 48 48 H 1.08000 * 120.03693 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0013 6 1 3.6450 3.4238 0.8431 7 6 3.6757 3.5695 -1.3059 8 6 5.5818 2.8868 0.1258 9 8 6.2034 1.8553 -0.0176 10 7 6.2342 4.0347 0.3964 11 6 5.4787 5.2549 0.6902 12 6 5.1413 5.2956 2.1584 13 1 5.4584 4.4929 2.8078 14 6 4.4288 6.3580 2.6729 15 7 4.0431 7.3356 1.8822 16 14 4.0113 6.4087 4.4929 17 1 5.2648 6.3986 5.2888 18 1 3.2453 7.6456 4.7907 19 1 3.1912 5.2221 4.8459 20 6 7.6332 4.0609 0.3968 21 6 8.3500 2.9511 -0.0312 22 6 9.7309 2.9818 -0.0338 23 6 10.3996 4.1122 0.3987 24 6 11.9064 4.1403 0.3996 25 6 9.6887 5.2171 0.8301 26 6 8.3078 5.1946 0.8305 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8901 33 1 1.6766 1.9564 -0.8899 34 1 3.9336 0.9286 -0.8892 35 1 3.9329 0.9287 0.8908 36 1 4.1778 3.0820 -2.1416 37 1 3.9651 4.6198 -1.2708 38 1 2.5962 3.4943 -1.4368 39 1 6.0804 6.1261 0.4314 40 1 4.5586 5.2622 0.1057 41 1 3.5422 8.0831 2.2443 42 1 7.8284 2.0665 -0.3653 43 1 10.2889 2.1204 -0.3700 44 1 12.2760 3.7770 1.3585 45 1 12.2821 3.5020 -0.4002 46 1 12.2508 5.1622 0.2411 47 1 10.2139 6.0987 1.1669 48 1 7.7532 6.0577 1.1679 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800466480.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:07:30 Heat of formation + Delta-G solvation = -31.531545 kcal Electronic energy + Delta-G solvation = -25339.132224 eV Core-core repulsion = 21972.215907 eV Total energy + Delta-G solvation = -3366.916317 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.31588 -38.24241 -36.15325 -35.38090 -33.33447 -32.73989 -31.18052 -30.32512 -28.46408 -27.55076 -26.07475 -24.80436 -23.47835 -22.35636 -21.76122 -20.94384 -20.11784 -18.50865 -16.81977 -16.79381 -16.15432 -15.53976 -15.07085 -14.68701 -14.53561 -14.37761 -14.03271 -13.51332 -13.48013 -13.37506 -13.03768 -12.88705 -12.84022 -12.52112 -12.26856 -12.09748 -11.90422 -11.67653 -11.48191 -11.47487 -11.21191 -11.07492 -11.01956 -10.79021 -10.76151 -10.50210 -10.47391 -10.33456 -10.25118 -10.20253 -10.00523 -9.05546 -8.70915 -8.54415 -8.32008 -7.06595 -6.26798 -4.35300 1.85857 2.02962 3.20210 3.24071 3.25140 3.31898 3.70341 4.26339 4.47284 4.88557 5.00729 5.04494 5.07738 5.25903 5.32932 5.35931 5.39037 5.46156 5.61633 5.66238 5.68246 5.81909 5.82562 5.83984 5.89833 5.99609 6.00920 6.07688 6.11387 6.13392 6.20565 6.23684 6.28769 6.30881 6.38282 6.42014 6.57405 6.65233 6.71727 6.80614 6.98422 7.01885 7.11026 7.19552 7.34179 7.65714 7.84406 7.92228 8.15692 8.68129 8.83730 9.32427 10.79080 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.009426 B = 0.005320 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2969.681160 B = 5261.429403 C = 7563.764761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.122 4.122 4 C -0.096 4.096 5 C -0.109 4.109 6 H 0.114 0.886 7 C -0.145 4.145 8 C 0.525 3.475 9 O -0.547 6.547 10 N -0.535 5.535 11 C 0.221 3.779 12 C -0.540 4.540 13 H 0.061 0.939 14 C 0.069 3.931 15 N -0.889 5.889 16 Si 0.897 3.103 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.274 1.274 20 C 0.167 3.833 21 C -0.172 4.172 22 C -0.107 4.107 23 C -0.134 4.134 24 C -0.103 4.103 25 C -0.103 4.103 26 C -0.144 4.144 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.051 0.949 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.045 0.955 40 H 0.056 0.944 41 H 0.267 0.733 42 H 0.172 0.828 43 H 0.113 0.887 44 H 0.060 0.940 45 H 0.058 0.942 46 H 0.059 0.941 47 H 0.116 0.884 48 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.257 -7.280 -5.100 8.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.159 4.159 4 C -0.134 4.134 5 C -0.130 4.130 6 H 0.132 0.868 7 C -0.202 4.202 8 C 0.316 3.684 9 O -0.428 6.428 10 N -0.254 5.254 11 C 0.103 3.897 12 C -0.579 4.579 13 H 0.079 0.921 14 C -0.134 4.134 15 N -0.526 5.526 16 Si 0.724 3.276 17 H -0.200 1.200 18 H -0.210 1.210 19 H -0.200 1.200 20 C 0.071 3.929 21 C -0.192 4.192 22 C -0.125 4.125 23 C -0.135 4.135 24 C -0.160 4.160 25 C -0.122 4.122 26 C -0.164 4.164 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.189 0.811 43 H 0.131 0.869 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.078 0.922 47 H 0.134 0.866 48 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.355 -7.598 -5.178 9.294 hybrid contribution -0.244 0.423 1.234 1.327 sum 1.111 -7.175 -3.944 8.263 Atomic orbital electron populations 1.21781 0.96225 1.01145 1.01798 1.21522 0.95448 0.97316 1.01866 1.21696 0.95477 0.96364 1.02408 1.21374 0.94522 0.94778 1.02767 1.21294 0.91530 0.98530 1.01628 0.86767 1.21886 1.01739 1.01367 0.95245 1.20776 0.90480 0.82201 0.74956 1.90299 1.68062 1.32772 1.51623 1.46048 1.03956 1.12604 1.62748 1.19871 0.92093 0.80464 0.97299 1.21358 1.36154 1.07175 0.93183 0.92075 1.24895 0.95182 0.95038 0.98326 1.69903 1.37516 1.09737 1.35491 0.86559 0.78751 0.77577 0.84713 1.20023 1.21022 1.19973 1.18096 0.83123 0.94828 0.96861 1.22476 0.94023 1.00580 1.02128 1.20872 0.94088 0.97065 1.00524 1.19762 0.95401 0.94911 1.03398 1.20654 0.92114 1.01784 1.01455 1.20726 0.93368 0.97741 1.00319 1.21097 0.94205 0.98810 1.02333 0.92755 0.92859 0.93165 0.92231 0.92157 0.91725 0.91719 0.91668 0.91718 0.92990 0.90997 0.91479 0.93737 0.92611 0.92287 0.81148 0.86882 0.92097 0.92326 0.92246 0.86589 0.84498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.91 37.16 0.37 -1.13 16 2 C -0.12 -1.39 5.93 -26.73 -0.16 -1.54 16 3 C -0.12 -1.56 4.97 -26.73 -0.13 -1.69 16 4 C -0.10 -1.47 3.99 -26.73 -0.11 -1.57 16 5 C -0.11 -1.91 1.88 -91.78 -0.17 -2.08 16 6 H 0.11 2.21 7.04 -51.93 -0.37 1.85 16 7 C -0.15 -2.26 8.77 37.15 0.33 -1.93 16 8 C 0.52 10.79 6.79 -10.99 -0.07 10.72 16 9 O -0.55 -11.78 12.56 5.55 0.07 -11.71 16 10 N -0.54 -11.60 2.69 -114.74 -0.31 -11.91 16 11 C 0.22 5.12 4.16 -5.19 -0.02 5.10 16 12 C -0.54 -13.73 8.85 -34.44 -0.30 -14.03 16 13 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 14 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 15 N -0.89 -23.56 13.29 55.43 0.74 -22.83 16 16 Si 0.90 20.26 29.54 -169.99 -5.02 15.24 16 17 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 20 C 0.17 3.54 6.49 -83.69 -0.54 3.00 16 21 C -0.17 -3.42 8.98 -39.39 -0.35 -3.78 16 22 C -0.11 -1.83 9.69 -39.61 -0.38 -2.21 16 23 C -0.13 -2.16 5.88 -104.59 -0.62 -2.78 16 24 C -0.10 -1.27 10.01 36.01 0.36 -0.90 16 25 C -0.10 -1.78 9.69 -39.61 -0.38 -2.17 16 26 C -0.14 -2.90 9.15 -39.39 -0.36 -3.26 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 0.78 6.47 -51.93 -0.34 0.44 16 34 H 0.06 0.98 8.11 -51.93 -0.42 0.56 16 35 H 0.06 1.05 8.12 -51.93 -0.42 0.63 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.07 1.22 5.81 -51.93 -0.30 0.92 16 38 H 0.07 0.90 6.36 -51.93 -0.33 0.57 16 39 H 0.04 1.09 6.33 -51.93 -0.33 0.76 16 40 H 0.06 1.28 4.47 -51.93 -0.23 1.05 16 41 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 42 H 0.17 3.54 4.71 -55.26 -0.26 3.28 16 43 H 0.11 1.65 8.06 -52.48 -0.42 1.22 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 46 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 47 H 0.12 1.72 8.06 -52.48 -0.42 1.30 16 48 H 0.14 2.91 6.29 -52.49 -0.33 2.58 16 LS Contribution 377.27 15.07 5.69 5.69 Total: -1.00 -27.22 377.27 -9.43 -36.66 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -7.94 Total: 7.45 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: -2.65 Total: -18.59 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: 0.43 Total: -34.74 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.07 Total: -11.71 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -27.22 -9.43 -36.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800466480.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.124 kcal (2) G-P(sol) polarization free energy of solvation -27.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds