Wall clock time and date at job start Tue Mar 31 2020 09:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46870 * 2 1 4 4 C 1.53004 * 109.46870 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46870 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.46998 * 55.00626 * 5 4 3 7 7 C 1.52991 * 109.47361 * 295.00100 * 5 4 3 8 8 C 1.50702 * 109.46899 * 174.99983 * 5 4 3 9 9 O 1.21288 * 120.00023 * 12.30421 * 8 5 4 10 10 N 1.34772 * 119.99925 * 192.30255 * 8 5 4 11 11 C 1.46497 * 120.00271 * 5.57800 * 10 8 5 12 12 C 1.50701 * 109.47114 * 86.03726 * 11 10 8 13 13 H 1.08005 * 119.99893 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00310 * 179.97438 * 12 11 10 15 15 N 1.31520 * 119.99751 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00161 * 180.02562 * 14 12 11 17 17 H 1.48492 * 109.47066 * 60.00405 * 16 14 12 18 18 H 1.48500 * 109.46911 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47102 * 300.00311 * 16 14 12 20 20 C 1.39922 * 120.00062 * 185.57543 * 10 8 5 21 21 C 1.38878 * 120.06759 * 7.47413 * 20 10 8 22 22 C 1.38117 * 119.92493 * 179.78824 * 21 20 10 23 23 C 1.38275 * 120.07476 * 0.48911 * 22 21 20 24 24 C 1.50705 * 119.93280 * 179.76609 * 23 22 21 25 25 C 1.38289 * 120.13832 * 359.74222 * 23 22 21 26 26 C 1.38107 * 120.07067 * 0.02562 * 25 23 22 27 27 H 1.09002 * 109.46882 * 299.99389 * 1 2 3 28 28 H 1.08997 * 109.47207 * 59.99887 * 1 2 3 29 29 H 1.09008 * 109.47061 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46595 * 240.00155 * 2 1 3 31 31 H 1.09000 * 109.46889 * 120.00511 * 2 1 3 32 32 H 1.09002 * 109.46870 * 60.00603 * 3 2 1 33 33 H 1.08997 * 109.47298 * 300.00057 * 3 2 1 34 34 H 1.09003 * 109.46595 * 60.00155 * 4 3 2 35 35 H 1.09000 * 109.46889 * 300.00511 * 4 3 2 36 36 H 1.09002 * 109.47142 * 295.27964 * 7 5 4 37 37 H 1.09003 * 109.47525 * 175.27463 * 7 5 4 38 38 H 1.09005 * 109.47371 * 55.27853 * 7 5 4 39 39 H 1.08996 * 109.47468 * 206.04093 * 11 10 8 40 40 H 1.09005 * 109.47192 * 326.04130 * 11 10 8 41 41 H 0.96994 * 119.99701 * 180.02562 * 15 14 12 42 42 H 1.07994 * 120.03789 * 0.02562 * 21 20 10 43 43 H 1.08005 * 119.96124 * 180.23030 * 22 21 20 44 44 H 1.08994 * 109.46996 * 269.97389 * 24 23 22 45 45 H 1.09001 * 109.46640 * 29.97728 * 24 23 22 46 46 H 1.08998 * 109.46838 * 149.97751 * 24 23 22 47 47 H 1.08005 * 119.96489 * 180.02562 * 25 23 22 48 48 H 1.08000 * 120.03693 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0013 6 1 3.6450 3.4238 0.8431 7 6 3.6757 3.5695 -1.3059 8 6 5.5818 2.8868 0.1258 9 8 6.2034 1.8553 -0.0176 10 7 6.2342 4.0347 0.3964 11 6 5.4787 5.2549 0.6902 12 6 5.1413 5.2956 2.1584 13 1 5.4584 4.4929 2.8078 14 6 4.4288 6.3580 2.6729 15 7 4.0431 7.3356 1.8822 16 14 4.0113 6.4087 4.4929 17 1 5.2648 6.3986 5.2888 18 1 3.2453 7.6456 4.7907 19 1 3.1912 5.2221 4.8459 20 6 7.6332 4.0609 0.3968 21 6 8.3500 2.9511 -0.0312 22 6 9.7309 2.9818 -0.0338 23 6 10.3996 4.1122 0.3987 24 6 11.9064 4.1403 0.3996 25 6 9.6887 5.2171 0.8301 26 6 8.3078 5.1946 0.8305 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8901 33 1 1.6766 1.9564 -0.8899 34 1 3.9336 0.9286 -0.8892 35 1 3.9329 0.9287 0.8908 36 1 4.1778 3.0820 -2.1416 37 1 3.9651 4.6198 -1.2708 38 1 2.5962 3.4943 -1.4368 39 1 6.0804 6.1261 0.4314 40 1 4.5586 5.2622 0.1057 41 1 3.5422 8.0831 2.2443 42 1 7.8284 2.0665 -0.3653 43 1 10.2889 2.1204 -0.3700 44 1 12.2760 3.7770 1.3585 45 1 12.2821 3.5020 -0.4002 46 1 12.2508 5.1622 0.2411 47 1 10.2139 6.0987 1.1669 48 1 7.7532 6.0577 1.1679 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800466480.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:07:29 Heat of formation + Delta-G solvation = -42.341019 kcal Electronic energy + Delta-G solvation = -25339.600958 eV Core-core repulsion = 21972.215907 eV Total energy + Delta-G solvation = -3367.385051 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.90045 -39.67959 -37.35124 -37.06501 -34.78370 -34.35850 -32.52661 -31.79387 -29.58573 -29.37421 -27.40177 -26.07688 -25.24667 -23.60368 -23.27328 -22.07529 -21.44199 -20.04159 -18.77298 -18.37083 -17.79999 -16.80663 -16.53126 -16.31224 -16.11799 -15.70203 -15.42693 -14.91266 -14.68749 -14.51165 -14.39952 -14.28852 -14.14467 -13.96435 -13.68061 -13.41153 -13.19896 -13.00470 -12.94169 -12.90507 -12.66138 -12.61718 -12.31063 -12.21744 -12.11849 -11.91000 -11.88967 -11.79500 -11.67963 -11.48706 -11.31017 -10.72510 -10.65905 -10.16512 -9.79167 -8.65777 -8.23158 -6.40697 0.38635 0.55573 1.38407 1.39477 1.46894 1.69012 2.11278 2.37703 2.98622 3.04085 3.49229 3.80741 3.97324 4.04181 4.10945 4.22251 4.25312 4.31227 4.33837 4.46378 4.54357 4.58088 4.62778 4.64250 4.74290 4.82153 4.87667 4.90921 4.93169 4.98986 4.99453 5.02006 5.09934 5.15549 5.19262 5.22835 5.27129 5.33429 5.39858 5.49167 5.50292 5.54920 5.55793 5.62945 5.76585 5.83979 5.95630 6.31168 6.44879 6.71714 7.16272 7.30907 8.79184 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.009426 B = 0.005320 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2969.681160 B = 5261.429403 C = 7563.764761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.117 4.117 4 C -0.088 4.088 5 C -0.105 4.105 6 H 0.093 0.907 7 C -0.138 4.138 8 C 0.515 3.485 9 O -0.561 6.561 10 N -0.542 5.542 11 C 0.238 3.762 12 C -0.547 4.547 13 H 0.043 0.957 14 C 0.032 3.968 15 N -0.912 5.912 16 Si 0.951 3.049 17 H -0.277 1.277 18 H -0.276 1.276 19 H -0.270 1.270 20 C 0.132 3.868 21 C -0.187 4.187 22 C -0.106 4.106 23 C -0.124 4.124 24 C -0.101 4.101 25 C -0.103 4.103 26 C -0.163 4.163 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.048 0.952 36 H 0.060 0.940 37 H 0.053 0.947 38 H 0.092 0.908 39 H 0.026 0.974 40 H 0.057 0.943 41 H 0.271 0.729 42 H 0.160 0.840 43 H 0.143 0.857 44 H 0.074 0.926 45 H 0.076 0.924 46 H 0.074 0.926 47 H 0.142 0.858 48 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.050 -7.991 -5.265 9.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.154 4.154 4 C -0.126 4.126 5 C -0.126 4.126 6 H 0.111 0.889 7 C -0.195 4.195 8 C 0.307 3.693 9 O -0.442 6.442 10 N -0.261 5.261 11 C 0.118 3.882 12 C -0.586 4.586 13 H 0.061 0.939 14 C -0.170 4.170 15 N -0.550 5.550 16 Si 0.776 3.224 17 H -0.203 1.203 18 H -0.200 1.200 19 H -0.195 1.195 20 C 0.037 3.963 21 C -0.206 4.206 22 C -0.124 4.124 23 C -0.125 4.125 24 C -0.157 4.157 25 C -0.122 4.122 26 C -0.184 4.184 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.111 0.889 39 H 0.044 0.956 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.177 0.823 43 H 0.161 0.839 44 H 0.093 0.907 45 H 0.095 0.905 46 H 0.093 0.907 47 H 0.160 0.840 48 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.159 -8.314 -5.348 10.119 hybrid contribution -0.348 0.633 1.265 1.457 sum 1.810 -7.681 -4.083 8.885 Atomic orbital electron populations 1.21765 0.94964 1.02046 1.01980 1.21507 0.96524 0.95943 1.02032 1.21665 0.93364 0.97789 1.02584 1.21320 0.96318 0.92808 1.02112 1.21323 0.89348 1.00115 1.01815 0.88927 1.21839 1.03427 0.99885 0.94319 1.21351 0.91715 0.81730 0.74501 1.90283 1.68696 1.32921 1.52337 1.46031 1.04482 1.12347 1.63227 1.19530 0.91806 0.80666 0.96162 1.21426 1.36274 1.06793 0.94080 0.93886 1.25515 0.94989 0.94645 1.01822 1.69974 1.37977 1.10144 1.36948 0.85709 0.78386 0.77915 0.80356 1.20278 1.20038 1.19533 1.18418 0.83046 0.96001 0.98802 1.22461 0.95418 0.99758 1.02985 1.21238 0.93056 0.98515 0.99584 1.20244 0.97841 0.93587 1.00823 1.20732 0.88574 1.03476 1.02954 1.21066 0.92220 0.99287 0.99577 1.21075 0.95635 0.97973 1.03683 0.93052 0.92219 0.91946 0.91529 0.92598 0.92523 0.90516 0.91335 0.93289 0.92086 0.92847 0.88922 0.95599 0.92548 0.92008 0.82316 0.83888 0.90694 0.90474 0.90659 0.84010 0.86730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 9.91 71.98 0.71 -1.97 16 2 C -0.12 -2.58 5.93 30.60 0.18 -2.40 16 3 C -0.12 -2.89 4.97 30.60 0.15 -2.74 16 4 C -0.09 -2.69 3.99 30.60 0.12 -2.56 16 5 C -0.10 -3.80 1.88 -11.54 -0.02 -3.82 16 6 H 0.09 3.76 7.04 -2.39 -0.02 3.75 16 7 C -0.14 -4.30 8.77 71.98 0.63 -3.67 16 8 C 0.51 22.10 6.79 87.66 0.60 22.70 16 9 O -0.56 -24.99 12.56 -3.05 -0.04 -25.03 16 10 N -0.54 -24.75 2.69 -635.31 -1.71 -26.46 16 11 C 0.24 11.62 4.16 85.63 0.36 11.98 16 12 C -0.55 -28.95 8.85 25.60 0.23 -28.72 16 13 H 0.04 2.39 7.81 -2.91 -0.02 2.37 16 14 C 0.03 1.66 5.46 84.65 0.46 2.13 16 15 N -0.91 -49.22 13.29 21.45 0.28 -48.94 16 16 Si 0.95 41.92 29.54 68.60 2.03 43.95 16 17 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 18 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 19 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 20 C 0.13 5.84 6.49 38.15 0.25 6.09 16 21 C -0.19 -7.51 8.98 22.39 0.20 -7.31 16 22 C -0.11 -3.45 9.69 22.25 0.22 -3.24 16 23 C -0.12 -3.72 5.88 -19.84 -0.12 -3.84 16 24 C -0.10 -2.06 10.01 71.24 0.71 -1.35 16 25 C -0.10 -3.47 9.69 22.25 0.22 -3.26 16 26 C -0.16 -6.79 9.15 22.39 0.20 -6.59 16 27 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 30 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.08 1.72 6.47 -2.39 -0.02 1.70 16 34 H 0.07 2.05 8.11 -2.39 -0.02 2.03 16 35 H 0.05 1.63 8.12 -2.39 -0.02 1.61 16 36 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.05 1.87 5.81 -2.39 -0.01 1.85 16 38 H 0.09 2.39 6.36 -2.38 -0.02 2.37 16 39 H 0.03 1.35 6.33 -2.39 -0.02 1.34 16 40 H 0.06 2.73 4.47 -2.38 -0.01 2.72 16 41 H 0.27 13.84 8.31 -92.71 -0.77 13.07 16 42 H 0.16 6.77 4.71 -46.76 -0.22 6.55 16 43 H 0.14 3.75 8.06 -2.91 -0.02 3.73 16 44 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.08 1.33 8.08 -2.39 -0.02 1.31 16 46 H 0.07 1.34 8.08 -2.39 -0.02 1.32 16 47 H 0.14 3.94 8.06 -2.91 -0.02 3.92 16 48 H 0.11 5.20 6.29 -2.91 -0.02 5.18 16 Total: -1.00 -60.17 377.27 6.39 -53.78 By element: Atomic # 1 Polarization: 30.55 SS G_CDS: 0.72 Total: 31.28 kcal Atomic # 6 Polarization: -33.68 SS G_CDS: 5.10 Total: -28.58 kcal Atomic # 7 Polarization: -73.97 SS G_CDS: -1.42 Total: -75.40 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: -0.04 Total: -25.03 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -60.17 6.39 -53.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800466480.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.441 kcal (2) G-P(sol) polarization free energy of solvation -60.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds