Wall clock time and date at job start Tue Mar 31 2020 08:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50698 * 109.46713 * 2 1 4 4 C 1.38289 * 119.92993 * 90.00286 * 3 2 1 5 5 C 1.38102 * 120.07074 * 180.02562 * 4 3 2 6 6 C 1.38881 * 119.93358 * 359.97438 * 5 4 3 7 7 N 1.39920 * 120.06808 * 179.97438 * 6 5 4 8 8 C 1.46500 * 120.00425 * 67.70651 * 7 6 5 9 9 C 1.53001 * 109.47286 * 89.99209 * 8 7 6 10 10 C 1.34785 * 119.99709 * 247.69828 * 7 6 5 11 11 O 1.21277 * 119.99739 * 4.83808 * 10 7 6 12 12 C 1.50702 * 119.99692 * 184.83564 * 10 7 6 13 13 C 1.52999 * 109.46926 * 180.02562 * 12 10 7 14 14 C 1.53005 * 109.47021 * 180.02562 * 13 12 10 15 15 C 1.53004 * 109.46781 * 179.97438 * 14 13 12 16 16 C 1.50700 * 109.46888 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00002 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00072 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99969 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00017 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47223 * 60.00126 * 20 18 16 22 22 H 1.48502 * 109.46915 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47400 * 299.99909 * 20 18 16 24 24 C 1.38871 * 119.85370 * 0.25026 * 6 5 4 25 25 C 1.38106 * 119.92963 * 359.51924 * 24 6 5 26 26 H 1.09006 * 109.47121 * 60.00092 * 1 2 3 27 27 H 1.09001 * 109.46712 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47237 * 299.99686 * 1 2 3 29 29 H 1.09002 * 109.46802 * 240.00380 * 2 1 3 30 30 H 1.08992 * 109.46987 * 119.99879 * 2 1 3 31 31 H 1.07998 * 119.96165 * 0.02562 * 4 3 2 32 32 H 1.08003 * 120.03666 * 179.97438 * 5 4 3 33 33 H 1.09005 * 109.46875 * 329.99840 * 8 7 6 34 34 H 1.08995 * 109.47626 * 209.99549 * 8 7 6 35 35 H 1.09003 * 109.47287 * 59.99817 * 9 8 7 36 36 H 1.09002 * 109.47507 * 180.02562 * 9 8 7 37 37 H 1.09005 * 109.47354 * 300.00264 * 9 8 7 38 38 H 1.09001 * 109.47293 * 300.00339 * 12 10 7 39 39 H 1.09005 * 109.46981 * 59.99992 * 12 10 7 40 40 H 1.09001 * 109.47198 * 300.00136 * 13 12 10 41 41 H 1.08996 * 109.47019 * 59.99724 * 13 12 10 42 42 H 1.08995 * 109.46914 * 299.99410 * 14 13 12 43 43 H 1.08995 * 109.46811 * 60.00183 * 14 13 12 44 44 H 1.08991 * 109.47399 * 299.99945 * 15 14 13 45 45 H 1.09006 * 109.46720 * 60.00331 * 15 14 13 46 46 H 0.96996 * 120.00327 * 180.02562 * 19 18 16 47 47 H 1.07998 * 120.03102 * 179.74968 * 24 6 5 48 48 H 1.08002 * 119.96476 * 180.22393 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2623 2.0713 1.1985 5 6 2.7220 3.3736 1.2019 6 6 2.9539 4.0298 0.0000 7 7 3.4192 5.3494 0.0002 8 6 4.7696 5.6499 0.4820 9 6 5.7564 5.5724 -0.6847 10 6 2.6249 6.3440 -0.4432 11 8 1.4780 6.1088 -0.7595 12 6 3.1621 7.7483 -0.5456 13 6 2.0654 8.6767 -1.0709 14 6 2.6109 10.1024 -1.1756 15 6 1.5143 11.0307 -1.7015 16 6 2.0514 12.4350 -1.8040 17 1 3.0729 12.6443 -1.5227 18 6 1.2388 13.4526 -2.2570 19 7 -0.0052 13.1978 -2.5992 20 14 1.9049 15.1931 -2.3847 21 1 3.0598 15.2139 -3.3180 22 1 0.8405 16.0941 -2.8951 23 1 2.3439 15.6548 -1.0434 24 6 2.7175 3.3753 -1.2018 25 6 2.2623 2.0714 -1.1984 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 2.0822 1.5604 2.1327 32 1 2.9011 3.8813 2.1382 33 1 5.0525 4.9255 1.2458 34 1 4.7887 6.6531 0.9079 35 1 5.4736 6.2967 -1.4486 36 1 6.7613 5.7956 -0.3261 37 1 5.7375 4.5691 -1.1106 38 1 3.4837 8.0871 0.4392 39 1 4.0104 7.7637 -1.2300 40 1 1.7434 8.3381 -2.0557 41 1 1.2174 8.6611 -0.3863 42 1 2.9330 10.4413 -0.1910 43 1 3.4587 10.1176 -1.8605 44 1 1.1925 10.6917 -2.6861 45 1 0.6662 11.0155 -1.0168 46 1 -0.5768 13.9135 -2.9182 47 1 2.8930 3.8842 -2.1380 48 1 2.0817 1.5607 -2.1327 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807578109.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:35 Heat of formation + Delta-G solvation = -43.044122 kcal Electronic energy + Delta-G solvation = -23973.116859 eV Core-core repulsion = 20605.701319 eV Total energy + Delta-G solvation = -3367.415540 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.73055 -38.96376 -36.34578 -34.95230 -33.96827 -32.57478 -31.18225 -30.96261 -29.90232 -28.44207 -25.80023 -24.12157 -23.85065 -22.69306 -22.30087 -21.07828 -20.00874 -19.27556 -17.47104 -16.79396 -16.21815 -16.13784 -15.83959 -15.32340 -14.70690 -14.42444 -14.24582 -14.05973 -13.95644 -13.79832 -13.62626 -13.48398 -12.99352 -12.78392 -12.60587 -12.29290 -12.11662 -12.07063 -11.62010 -11.60348 -11.56731 -11.42397 -11.26389 -11.12407 -10.93964 -10.52924 -10.49252 -10.38998 -9.82836 -9.59979 -9.41159 -9.20147 -9.13021 -8.97747 -8.43039 -8.28970 -5.93709 -3.96354 1.04587 1.21006 2.64765 2.79624 3.36107 3.40460 3.42647 3.49634 4.49082 4.49761 4.55182 4.60930 4.69855 4.78643 4.84895 4.95711 5.05402 5.08627 5.17750 5.22390 5.29092 5.31993 5.33459 5.39265 5.41474 5.53032 5.57534 5.61358 5.65158 5.76854 5.84635 5.90777 5.98225 6.08260 6.14246 6.27431 6.32565 6.39317 6.44811 6.55418 6.84704 6.90774 7.01793 7.18613 7.24258 7.75265 7.91572 8.07604 8.20144 8.49192 9.11143 9.67073 11.17582 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.025356 B = 0.002286 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.023924 B =12246.147195 C =12964.316123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.083 4.083 3 C -0.088 4.088 4 C -0.109 4.109 5 C -0.120 4.120 6 C 0.145 3.855 7 N -0.582 5.582 8 C 0.106 3.894 9 C -0.174 4.174 10 C 0.515 3.485 11 O -0.519 6.519 12 C -0.136 4.136 13 C -0.104 4.104 14 C -0.109 4.109 15 C 0.020 3.980 16 C -0.520 4.520 17 H 0.054 0.946 18 C 0.055 3.945 19 N -0.895 5.895 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 C -0.105 4.105 25 C -0.107 4.107 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.047 0.953 43 H 0.047 0.953 44 H 0.016 0.984 45 H 0.016 0.984 46 H 0.260 0.740 47 H 0.122 0.878 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.141 -27.241 7.761 30.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.120 4.120 3 C -0.088 4.088 4 C -0.127 4.127 5 C -0.139 4.139 6 C 0.055 3.945 7 N -0.313 5.313 8 C -0.015 4.015 9 C -0.232 4.232 10 C 0.305 3.695 11 O -0.392 6.392 12 C -0.176 4.176 13 C -0.142 4.142 14 C -0.147 4.147 15 C -0.017 4.017 16 C -0.559 4.559 17 H 0.072 0.928 18 C -0.146 4.146 19 N -0.535 5.535 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.124 4.124 25 C -0.125 4.125 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.141 0.859 32 H 0.141 0.859 33 H 0.097 0.903 34 H 0.106 0.894 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.070 0.930 47 H 0.140 0.860 48 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 9.347 -27.223 7.517 29.749 hybrid contribution 0.402 1.072 -0.088 1.148 sum 9.749 -26.152 7.430 28.882 Atomic orbital electron populations 1.21763 0.94632 1.01638 1.02529 1.20529 0.96284 0.92509 1.02727 1.19916 0.99311 0.96458 0.93110 1.20851 0.99913 0.94323 0.97634 1.21190 1.00203 0.95321 0.97226 1.17571 0.99176 0.84613 0.93140 1.45757 1.15436 1.04686 1.65462 1.21673 0.80451 1.02613 0.96809 1.22232 0.99133 1.02748 0.99067 1.21267 0.85437 0.87141 0.75622 1.90728 1.17606 1.83813 1.47090 1.21872 1.01501 0.90582 1.03599 1.21479 0.96430 0.94759 1.01552 1.21644 1.00084 0.92828 1.00152 1.19091 0.93285 0.93032 0.96296 1.21241 0.97823 0.93367 1.43449 0.92807 1.25047 0.94922 0.99033 0.95613 1.69963 1.06223 1.32667 1.44604 0.86666 0.78483 0.84515 0.78354 1.20298 1.21331 1.20289 1.21230 0.99348 0.94396 0.97473 1.20892 0.99642 0.94307 0.97705 0.92398 0.92433 0.92472 0.91066 0.91100 0.85870 0.85904 0.90277 0.89443 0.91816 0.91150 0.92316 0.89038 0.88906 0.91806 0.91781 0.93460 0.93469 0.96603 0.96598 0.92990 0.86046 0.85845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.89 37.16 0.37 -0.65 16 2 C -0.08 -0.57 6.06 -27.88 -0.17 -0.73 16 3 C -0.09 -0.81 5.14 -104.59 -0.54 -1.34 16 4 C -0.11 -1.01 9.69 -39.61 -0.38 -1.39 16 5 C -0.12 -1.27 9.68 -39.39 -0.38 -1.65 16 6 C 0.15 1.76 4.76 -83.69 -0.40 1.36 16 7 N -0.58 -6.89 2.52 -113.45 -0.29 -7.17 16 8 C 0.11 0.87 5.85 -4.04 -0.02 0.85 16 9 C -0.17 -1.29 10.23 37.16 0.38 -0.91 16 10 C 0.52 7.73 7.52 -10.98 -0.08 7.64 16 11 O -0.52 -10.02 15.73 5.56 0.09 -9.93 16 12 C -0.14 -1.87 4.37 -27.88 -0.12 -1.99 16 13 C -0.10 -1.90 4.50 -26.73 -0.12 -2.02 16 14 C -0.11 -2.27 5.15 -26.73 -0.14 -2.41 16 15 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 16 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 17 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 18 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -27.72 13.29 55.43 0.74 -26.98 16 20 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 C -0.10 -1.25 9.53 -39.40 -0.38 -1.63 16 25 C -0.11 -1.08 9.69 -39.61 -0.38 -1.47 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 30 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 31 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 32 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 33 H 0.08 0.53 7.86 -51.93 -0.41 0.13 16 34 H 0.09 0.63 6.47 -51.93 -0.34 0.29 16 35 H 0.06 0.53 6.95 -51.93 -0.36 0.17 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.09 1.07 7.26 -51.93 -0.38 0.70 16 39 H 0.09 1.11 6.95 -51.93 -0.36 0.75 16 40 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 41 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 42 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 47 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 48 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 393.41 15.07 5.93 5.93 Total: -1.00 -34.32 393.41 -10.03 -44.35 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -8.56 Total: -3.36 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: -2.92 Total: -19.84 kcal Atomic # 7 Polarization: -34.60 SS G_CDS: 0.45 Total: -34.15 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.09 Total: -9.93 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.32 -10.03 -44.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807578109.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.307 kcal (2) G-P(sol) polarization free energy of solvation -34.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds