Wall clock time and date at job start Tue Mar 31 2020 08:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50698 * 109.46713 * 2 1 4 4 C 1.38289 * 119.92993 * 90.00286 * 3 2 1 5 5 C 1.38102 * 120.07074 * 180.02562 * 4 3 2 6 6 C 1.38881 * 119.93358 * 359.97438 * 5 4 3 7 7 N 1.39920 * 120.06808 * 179.97438 * 6 5 4 8 8 C 1.46500 * 120.00425 * 67.70651 * 7 6 5 9 9 C 1.53001 * 109.47286 * 89.99209 * 8 7 6 10 10 C 1.34785 * 119.99709 * 247.69828 * 7 6 5 11 11 O 1.21277 * 119.99739 * 4.83808 * 10 7 6 12 12 C 1.50702 * 119.99692 * 184.83564 * 10 7 6 13 13 C 1.52999 * 109.46926 * 180.02562 * 12 10 7 14 14 C 1.53005 * 109.47021 * 180.02562 * 13 12 10 15 15 C 1.53004 * 109.46781 * 179.97438 * 14 13 12 16 16 C 1.50700 * 109.46888 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00002 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00072 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99969 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00017 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47223 * 60.00126 * 20 18 16 22 22 H 1.48502 * 109.46915 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47400 * 299.99909 * 20 18 16 24 24 C 1.38871 * 119.85370 * 0.25026 * 6 5 4 25 25 C 1.38106 * 119.92963 * 359.51924 * 24 6 5 26 26 H 1.09006 * 109.47121 * 60.00092 * 1 2 3 27 27 H 1.09001 * 109.46712 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47237 * 299.99686 * 1 2 3 29 29 H 1.09002 * 109.46802 * 240.00380 * 2 1 3 30 30 H 1.08992 * 109.46987 * 119.99879 * 2 1 3 31 31 H 1.07998 * 119.96165 * 0.02562 * 4 3 2 32 32 H 1.08003 * 120.03666 * 179.97438 * 5 4 3 33 33 H 1.09005 * 109.46875 * 329.99840 * 8 7 6 34 34 H 1.08995 * 109.47626 * 209.99549 * 8 7 6 35 35 H 1.09003 * 109.47287 * 59.99817 * 9 8 7 36 36 H 1.09002 * 109.47507 * 180.02562 * 9 8 7 37 37 H 1.09005 * 109.47354 * 300.00264 * 9 8 7 38 38 H 1.09001 * 109.47293 * 300.00339 * 12 10 7 39 39 H 1.09005 * 109.46981 * 59.99992 * 12 10 7 40 40 H 1.09001 * 109.47198 * 300.00136 * 13 12 10 41 41 H 1.08996 * 109.47019 * 59.99724 * 13 12 10 42 42 H 1.08995 * 109.46914 * 299.99410 * 14 13 12 43 43 H 1.08995 * 109.46811 * 60.00183 * 14 13 12 44 44 H 1.08991 * 109.47399 * 299.99945 * 15 14 13 45 45 H 1.09006 * 109.46720 * 60.00331 * 15 14 13 46 46 H 0.96996 * 120.00327 * 180.02562 * 19 18 16 47 47 H 1.07998 * 120.03102 * 179.74968 * 24 6 5 48 48 H 1.08002 * 119.96476 * 180.22393 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2623 2.0713 1.1985 5 6 2.7220 3.3736 1.2019 6 6 2.9539 4.0298 0.0000 7 7 3.4192 5.3494 0.0002 8 6 4.7696 5.6499 0.4820 9 6 5.7564 5.5724 -0.6847 10 6 2.6249 6.3440 -0.4432 11 8 1.4780 6.1088 -0.7595 12 6 3.1621 7.7483 -0.5456 13 6 2.0654 8.6767 -1.0709 14 6 2.6109 10.1024 -1.1756 15 6 1.5143 11.0307 -1.7015 16 6 2.0514 12.4350 -1.8040 17 1 3.0729 12.6443 -1.5227 18 6 1.2388 13.4526 -2.2570 19 7 -0.0052 13.1978 -2.5992 20 14 1.9049 15.1931 -2.3847 21 1 3.0598 15.2139 -3.3180 22 1 0.8405 16.0941 -2.8951 23 1 2.3439 15.6548 -1.0434 24 6 2.7175 3.3753 -1.2018 25 6 2.2623 2.0714 -1.1984 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 2.0822 1.5604 2.1327 32 1 2.9011 3.8813 2.1382 33 1 5.0525 4.9255 1.2458 34 1 4.7887 6.6531 0.9079 35 1 5.4736 6.2967 -1.4486 36 1 6.7613 5.7956 -0.3261 37 1 5.7375 4.5691 -1.1106 38 1 3.4837 8.0871 0.4392 39 1 4.0104 7.7637 -1.2300 40 1 1.7434 8.3381 -2.0557 41 1 1.2174 8.6611 -0.3863 42 1 2.9330 10.4413 -0.1910 43 1 3.4587 10.1176 -1.8605 44 1 1.1925 10.6917 -2.6861 45 1 0.6662 11.0155 -1.0168 46 1 -0.5768 13.9135 -2.9182 47 1 2.8930 3.8842 -2.1380 48 1 2.0817 1.5607 -2.1327 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807578109.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:35 Heat of formation + Delta-G solvation = -60.458884 kcal Electronic energy + Delta-G solvation = -23973.872019 eV Core-core repulsion = 20605.701319 eV Total energy + Delta-G solvation = -3368.170701 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.69755 -39.87402 -37.32063 -36.64880 -34.85883 -34.39968 -31.96436 -31.78133 -31.44561 -29.40196 -27.48900 -25.12893 -24.70727 -23.80763 -23.33262 -22.10130 -21.63185 -20.25374 -18.53876 -18.29748 -17.78695 -17.17678 -16.60556 -16.49354 -16.43606 -15.52973 -15.41425 -14.95832 -14.71402 -14.63572 -14.54289 -14.37084 -14.26466 -13.89094 -13.66870 -13.57220 -13.43195 -13.30530 -12.83308 -12.77464 -12.66367 -12.37933 -12.32169 -12.28416 -12.13811 -11.91060 -11.90374 -11.72285 -11.38725 -11.34912 -11.17435 -10.84781 -10.54553 -10.26353 -9.92747 -9.27140 -8.18445 -6.30866 0.23778 0.41276 1.40251 1.44537 1.52334 1.52541 1.88213 2.42052 2.70874 3.14012 3.59358 3.86464 3.86873 3.98157 3.99803 4.02566 4.07523 4.25195 4.34779 4.42154 4.47095 4.52675 4.54423 4.57883 4.61667 4.68156 4.73877 4.77781 4.84378 4.95352 4.98690 4.99776 5.08014 5.13872 5.16032 5.30537 5.31745 5.32804 5.37369 5.39339 5.47985 5.55647 5.65713 5.66509 5.77111 5.87498 6.07613 6.23901 6.25332 6.87388 7.11874 7.38656 8.93658 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.025356 B = 0.002286 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.023924 B =12246.147195 C =12964.316123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.080 4.080 3 C -0.088 4.088 4 C -0.109 4.109 5 C -0.126 4.126 6 C 0.120 3.880 7 N -0.572 5.572 8 C 0.098 3.902 9 C -0.170 4.170 10 C 0.512 3.488 11 O -0.576 6.576 12 C -0.124 4.124 13 C -0.095 4.095 14 C -0.094 4.094 15 C 0.019 3.981 16 C -0.541 4.541 17 H 0.067 0.933 18 C -0.009 4.009 19 N -0.938 5.938 20 Si 0.971 3.029 21 H -0.264 1.264 22 H -0.286 1.286 23 H -0.264 1.264 24 C -0.127 4.127 25 C -0.115 4.115 26 H 0.044 0.956 27 H 0.073 0.927 28 H 0.050 0.950 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.149 0.851 32 H 0.136 0.864 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.053 0.947 36 H 0.093 0.907 37 H 0.048 0.952 38 H 0.122 0.878 39 H 0.118 0.882 40 H 0.040 0.960 41 H 0.042 0.958 42 H 0.063 0.937 43 H 0.061 0.939 44 H -0.017 1.017 45 H -0.016 1.016 46 H 0.263 0.737 47 H 0.107 0.893 48 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.725 -27.851 9.330 32.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.117 4.117 3 C -0.088 4.088 4 C -0.128 4.128 5 C -0.146 4.146 6 C 0.030 3.970 7 N -0.301 5.301 8 C -0.022 4.022 9 C -0.228 4.228 10 C 0.303 3.697 11 O -0.454 6.454 12 C -0.163 4.163 13 C -0.134 4.134 14 C -0.131 4.131 15 C -0.018 4.018 16 C -0.579 4.579 17 H 0.086 0.914 18 C -0.206 4.206 19 N -0.579 5.579 20 Si 0.795 3.205 21 H -0.189 1.189 22 H -0.211 1.211 23 H -0.188 1.188 24 C -0.146 4.146 25 C -0.133 4.133 26 H 0.063 0.937 27 H 0.092 0.908 28 H 0.069 0.931 29 H 0.100 0.900 30 H 0.107 0.893 31 H 0.167 0.833 32 H 0.154 0.846 33 H 0.116 0.884 34 H 0.122 0.878 35 H 0.072 0.928 36 H 0.112 0.888 37 H 0.068 0.932 38 H 0.140 0.860 39 H 0.136 0.864 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.002 0.998 45 H 0.002 0.998 46 H 0.071 0.929 47 H 0.125 0.875 48 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 11.994 -27.864 9.109 31.673 hybrid contribution -0.430 1.156 -0.574 1.361 sum 11.564 -26.707 8.535 30.329 Atomic orbital electron populations 1.21764 0.94757 1.02450 1.01595 1.20581 0.96008 0.91022 1.04136 1.20255 0.98269 0.97649 0.92669 1.21201 0.98824 0.93952 0.98776 1.21391 1.00158 0.95958 0.97070 1.17810 1.00538 0.84800 0.93837 1.45759 1.16270 1.04104 1.63966 1.22011 0.78528 1.04131 0.97532 1.22198 1.00111 1.01950 0.98503 1.21435 0.84952 0.88097 0.75181 1.90705 1.20046 1.84689 1.49968 1.21754 1.00103 0.88890 1.05586 1.21258 0.97394 0.94546 1.00167 1.21436 0.98194 0.92662 1.00854 1.19052 0.94330 0.94356 0.94098 1.21719 0.98537 0.94313 1.43352 0.91440 1.26121 0.95103 1.04346 0.94998 1.70130 1.07876 1.34333 1.45540 0.85418 0.77972 0.78064 0.79084 1.18882 1.21142 1.18826 1.21288 1.00757 0.95452 0.97126 1.21119 0.99374 0.93821 0.98994 0.93703 0.90769 0.93061 0.90043 0.89344 0.83322 0.84591 0.88428 0.87812 0.92785 0.88841 0.93234 0.85983 0.86401 0.94071 0.93888 0.91816 0.91979 0.99843 0.99778 0.92867 0.87479 0.84550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.89 71.98 0.71 -1.12 16 2 C -0.08 -0.92 6.06 29.85 0.18 -0.74 16 3 C -0.09 -1.51 5.14 -19.84 -0.10 -1.61 16 4 C -0.11 -1.84 9.69 22.25 0.22 -1.63 16 5 C -0.13 -2.53 9.68 22.39 0.22 -2.31 16 6 C 0.12 2.90 4.76 38.16 0.18 3.09 16 7 N -0.57 -13.15 2.52 -631.24 -1.59 -14.74 16 8 C 0.10 1.38 5.85 86.38 0.50 1.88 16 9 C -0.17 -2.18 10.23 71.98 0.74 -1.44 16 10 C 0.51 15.45 7.52 87.66 0.66 16.11 16 11 O -0.58 -23.35 15.73 -3.02 -0.05 -23.39 16 12 C -0.12 -3.26 4.37 29.85 0.13 -3.13 16 13 C -0.10 -3.57 4.50 30.60 0.14 -3.43 16 14 C -0.09 -3.88 5.15 30.60 0.16 -3.72 16 15 C 0.02 1.04 4.97 29.85 0.15 1.19 16 16 C -0.54 -31.59 9.11 25.60 0.23 -31.36 16 17 H 0.07 3.67 7.74 -2.91 -0.02 3.64 16 18 C -0.01 -0.51 5.46 84.65 0.46 -0.05 16 19 N -0.94 -59.65 13.29 21.45 0.28 -59.36 16 20 Si 0.97 45.04 29.54 68.60 2.03 47.06 16 21 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 22 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 23 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 24 C -0.13 -3.14 9.53 22.39 0.21 -2.92 16 25 C -0.11 -2.32 9.69 22.25 0.22 -2.10 16 26 H 0.04 0.66 8.14 -2.38 -0.02 0.64 16 27 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.08 0.79 8.08 -2.39 -0.02 0.77 16 30 H 0.09 0.74 8.08 -2.39 -0.02 0.72 16 31 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 32 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 33 H 0.10 1.04 7.86 -2.38 -0.02 1.03 16 34 H 0.10 1.13 6.47 -2.39 -0.02 1.12 16 35 H 0.05 0.80 6.95 -2.39 -0.02 0.79 16 36 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 38 H 0.12 2.49 7.26 -2.39 -0.02 2.47 16 39 H 0.12 2.54 6.95 -2.38 -0.02 2.52 16 40 H 0.04 1.69 8.10 -2.39 -0.02 1.67 16 41 H 0.04 1.76 8.10 -2.39 -0.02 1.74 16 42 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 43 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 44 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 45 H -0.02 -0.99 8.14 -2.38 -0.02 -1.01 16 46 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 47 H 0.11 2.83 8.06 -2.91 -0.02 2.81 16 48 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -78.01 393.41 6.57 -71.43 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: 0.90 Total: 12.30 kcal Atomic # 6 Polarization: -38.30 SS G_CDS: 5.00 Total: -33.29 kcal Atomic # 7 Polarization: -72.80 SS G_CDS: -1.31 Total: -74.10 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -0.05 Total: -23.39 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -78.01 6.57 -71.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807578109.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.974 kcal (2) G-P(sol) polarization free energy of solvation -78.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds