Wall clock time and date at job start Tue Mar 31 2020 08:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47106 * 2 1 4 4 C 1.50699 * 109.47331 * 120.00374 * 2 1 3 5 5 C 1.38224 * 119.99992 * 120.00251 * 4 2 1 6 6 C 1.38241 * 119.99755 * 180.02562 * 5 4 2 7 7 C 1.38229 * 120.00063 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00044 * 179.97438 * 7 6 5 9 9 N 1.46901 * 109.47467 * 97.85208 * 8 7 6 10 10 C 1.46897 * 111.00151 * 159.29360 * 9 8 7 11 11 C 1.53001 * 109.47241 * 199.15638 * 10 9 8 12 12 H 1.08998 * 109.46730 * 60.00175 * 11 10 9 13 13 O 1.42895 * 109.47025 * 300.00328 * 11 10 9 14 14 C 1.50694 * 109.47146 * 179.97438 * 11 10 9 15 15 H 1.08001 * 120.00300 * 0.02562 * 14 11 10 16 16 C 1.37875 * 119.99914 * 179.97438 * 14 11 10 17 17 N 1.31514 * 120.00021 * 0.02562 * 16 14 11 18 18 Si 1.86804 * 120.00107 * 179.97438 * 16 14 11 19 19 H 1.48498 * 109.47484 * 270.00289 * 18 16 14 20 20 H 1.48501 * 109.46920 * 30.00360 * 18 16 14 21 21 H 1.48504 * 109.46801 * 150.00012 * 18 16 14 22 22 C 1.46906 * 110.99787 * 283.24733 * 9 8 7 23 23 C 1.52998 * 117.49734 * 347.13927 * 22 9 8 24 24 C 1.52997 * 117.49598 * 278.51571 * 22 9 8 25 25 C 1.38230 * 120.00110 * 0.24670 * 7 6 5 26 26 C 1.38235 * 119.99471 * 300.02106 * 4 2 1 27 27 H 1.09002 * 109.47274 * 299.99669 * 1 2 3 28 28 H 1.08995 * 109.47255 * 59.99871 * 1 2 3 29 29 H 1.09004 * 109.46782 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47274 * 240.00331 * 2 1 3 31 31 H 1.09002 * 109.46784 * 60.00031 * 3 2 1 32 32 H 1.08993 * 109.47352 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.46977 * 300.00309 * 3 2 1 34 34 H 1.08001 * 120.00308 * 359.97438 * 5 4 2 35 35 H 1.08002 * 119.99795 * 179.97438 * 6 5 4 36 36 H 1.09005 * 109.47154 * 337.84930 * 8 7 6 37 37 H 1.09004 * 109.46994 * 217.85113 * 8 7 6 38 38 H 1.09002 * 109.47286 * 79.15564 * 10 9 8 39 39 H 1.09005 * 109.47191 * 319.16121 * 10 9 8 40 40 H 0.96707 * 114.00188 * 299.99564 * 13 11 10 41 41 H 0.96998 * 120.00216 * 359.97438 * 17 16 14 42 42 H 1.08997 * 115.54739 * 132.84333 * 22 9 8 43 43 H 1.09004 * 117.50024 * 359.97438 * 23 22 9 44 44 H 1.09001 * 117.50208 * 145.02143 * 23 22 9 45 45 H 1.09004 * 117.49920 * 214.97742 * 24 22 9 46 46 H 1.08999 * 117.50575 * 359.97438 * 24 22 9 47 47 H 1.08001 * 120.00466 * 179.73075 * 25 7 6 48 48 H 1.07996 * 120.00518 * 359.97438 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 2.8271 -1.8343 1.1035 6 6 3.2875 -2.4863 2.2322 7 6 2.9527 -2.0147 3.4877 8 6 3.4541 -2.7258 4.7181 9 7 4.6480 -2.0388 5.2285 10 6 4.8792 -2.3649 6.6420 11 6 5.7961 -1.3105 7.2653 12 1 5.3255 -0.3302 7.1909 13 8 7.0443 -1.2938 6.5700 14 6 6.0327 -1.6448 8.7156 15 1 5.5753 -2.5218 9.1492 16 6 6.8341 -0.8316 9.4885 17 7 7.3915 0.2360 8.9604 18 14 7.1269 -1.2455 11.2865 19 1 6.0859 -0.5930 12.1206 20 1 7.0598 -2.7172 11.4728 21 1 8.4678 -0.7554 11.6952 22 6 5.8281 -2.3592 4.4144 23 6 5.7111 -3.5230 3.4281 24 6 6.5462 -3.6796 4.7005 25 6 2.1533 -0.8942 3.6146 26 6 1.6980 -0.2384 2.4859 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 3.0877 -2.2034 0.1225 35 1 3.9081 -3.3646 2.1330 36 1 3.7077 -3.7553 4.4648 37 1 2.6772 -2.7206 5.4827 38 1 5.3497 -3.3453 6.7164 39 1 3.9269 -2.3777 7.1724 40 1 7.5196 -2.1356 6.5945 41 1 7.2392 0.4512 8.0269 42 1 6.4400 -1.5074 4.1179 43 1 4.7586 -4.0511 3.3835 44 1 6.2460 -3.4369 2.4823 45 1 7.6307 -3.6965 4.5917 46 1 6.1434 -4.3103 5.4929 47 1 1.8880 -0.5282 4.5955 48 1 1.0772 0.6396 2.5851 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809571002.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:28:18 Heat of formation + Delta-G solvation = -0.154749 kcal Electronic energy + Delta-G solvation = -25227.713891 eV Core-core repulsion = 21862.158174 eV Total energy + Delta-G solvation = -3365.555717 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.98827 -38.68028 -35.88359 -35.36514 -33.13583 -32.03369 -30.80775 -30.60827 -27.87005 -27.31773 -25.49270 -23.89859 -23.25455 -22.32679 -21.91063 -21.03011 -19.83201 -19.07856 -17.23748 -16.75854 -16.42823 -15.46703 -15.06845 -14.86271 -14.70744 -14.10726 -13.99593 -13.80088 -13.70441 -13.62816 -13.47554 -13.15270 -12.56366 -12.50725 -12.28683 -12.16324 -11.99596 -11.73903 -11.57765 -11.35605 -11.28017 -11.13938 -10.83444 -10.75703 -10.66554 -10.40707 -10.16429 -10.11255 -9.96627 -9.79270 -9.14240 -8.75637 -8.44036 -8.41838 -8.03012 -7.67485 -6.30636 -4.13943 1.45338 1.56034 3.42812 3.45802 3.61830 3.80488 4.10170 4.43401 4.55967 4.58225 4.67584 4.97646 5.00883 5.03462 5.09248 5.15050 5.23259 5.25596 5.31397 5.40057 5.42345 5.43400 5.56731 5.58595 5.64804 5.68294 5.77570 5.80460 5.88303 5.95041 6.03886 6.05360 6.08331 6.17029 6.20965 6.21365 6.30166 6.34560 6.54395 6.64810 6.70846 6.75298 6.82252 7.14107 7.42794 7.54180 7.71303 8.09076 8.40280 8.91072 9.22433 9.72360 11.09681 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.021591 B = 0.003192 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.519338 B = 8769.148932 C = 9318.450307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.055 4.055 3 C -0.144 4.144 4 C -0.084 4.084 5 C -0.123 4.123 6 C -0.116 4.116 7 C -0.065 4.065 8 C 0.079 3.921 9 N -0.496 5.496 10 C 0.034 3.966 11 C 0.225 3.775 12 H 0.053 0.947 13 O -0.574 6.574 14 C -0.651 4.651 15 H 0.046 0.954 16 C 0.035 3.965 17 N -0.893 5.893 18 Si 1.068 2.932 19 H -0.288 1.288 20 H -0.290 1.290 21 H -0.284 1.284 22 C 0.063 3.937 23 C -0.216 4.216 24 C -0.208 4.208 25 C -0.094 4.094 26 C -0.117 4.117 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.115 0.885 35 H 0.125 0.875 36 H 0.046 0.954 37 H 0.076 0.924 38 H 0.034 0.966 39 H 0.065 0.935 40 H 0.347 0.653 41 H 0.286 0.714 42 H 0.123 0.877 43 H 0.101 0.899 44 H 0.092 0.908 45 H 0.095 0.905 46 H 0.091 0.909 47 H 0.121 0.879 48 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.149 -4.859 -17.370 21.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.074 4.074 3 C -0.202 4.202 4 C -0.085 4.085 5 C -0.141 4.141 6 C -0.134 4.134 7 C -0.066 4.066 8 C -0.048 4.048 9 N -0.218 5.218 10 C -0.093 4.093 11 C 0.168 3.832 12 H 0.071 0.929 13 O -0.377 6.377 14 C -0.689 4.689 15 H 0.064 0.936 16 C -0.174 4.174 17 N -0.527 5.527 18 Si 0.896 3.104 19 H -0.215 1.215 20 H -0.216 1.216 21 H -0.210 1.210 22 C -0.046 4.046 23 C -0.253 4.253 24 C -0.247 4.247 25 C -0.113 4.113 26 C -0.135 4.135 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.133 0.867 35 H 0.143 0.857 36 H 0.064 0.936 37 H 0.095 0.905 38 H 0.052 0.948 39 H 0.083 0.917 40 H 0.191 0.809 41 H 0.098 0.902 42 H 0.141 0.859 43 H 0.118 0.882 44 H 0.110 0.890 45 H 0.113 0.887 46 H 0.110 0.890 47 H 0.139 0.861 48 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -10.647 -3.198 -16.139 19.597 hybrid contribution -0.522 -2.072 -1.078 2.393 sum -11.169 -5.269 -17.217 21.188 Atomic orbital electron populations 1.21852 0.94579 1.01839 1.01767 1.20096 0.95735 0.96046 0.95485 1.21858 1.01410 0.95145 1.01745 1.19766 0.98297 0.95945 0.94446 1.20942 0.98864 0.96063 0.98200 1.21287 0.99589 1.00501 0.92028 1.19732 0.96649 0.96049 0.94136 1.21254 0.93726 0.95179 0.94684 1.62206 1.00641 1.56126 1.02842 1.23124 1.01019 0.99599 0.85553 1.19447 0.80623 0.93895 0.89259 0.92929 1.86498 1.36024 1.37568 1.77644 1.22452 1.36250 1.14041 0.96158 0.93552 1.25726 0.92938 0.93348 1.05368 1.70584 1.40086 1.24478 1.17594 0.83591 0.76719 0.75237 0.74811 1.21469 1.21646 1.21014 1.22726 0.93982 0.90853 0.97052 1.23693 1.01925 1.04945 0.94753 1.23344 0.99312 1.03164 0.98843 1.21005 0.97053 0.94705 0.98509 1.20896 1.00820 0.99868 0.91943 0.92427 0.92636 0.92668 0.90829 0.92375 0.92453 0.92656 0.86731 0.85743 0.93623 0.90514 0.94808 0.91655 0.80882 0.90205 0.85909 0.88154 0.88986 0.88688 0.89023 0.86128 0.86563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.01 37.16 0.33 -0.81 16 2 C -0.06 -0.50 3.09 -91.77 -0.28 -0.79 16 3 C -0.14 -1.28 9.01 37.16 0.33 -0.94 16 4 C -0.08 -0.97 4.78 -104.63 -0.50 -1.47 16 5 C -0.12 -1.44 9.67 -39.59 -0.38 -1.82 16 6 C -0.12 -1.47 8.66 -39.58 -0.34 -1.82 16 7 C -0.07 -0.92 5.13 -104.63 -0.54 -1.45 16 8 C 0.08 1.18 4.91 -4.98 -0.02 1.16 16 9 N -0.50 -8.84 4.60 -228.08 -1.05 -9.89 16 10 C 0.03 0.69 4.63 -3.83 -0.02 0.67 16 11 C 0.23 5.65 2.70 -27.89 -0.08 5.58 16 12 H 0.05 1.48 8.01 -51.93 -0.42 1.07 16 13 O -0.57 -14.18 9.92 -35.23 -0.35 -14.53 16 14 C -0.65 -18.03 8.76 -34.44 -0.30 -18.33 16 15 H 0.05 1.27 7.74 -52.49 -0.41 0.86 16 16 C 0.04 1.01 5.40 -17.82 -0.10 0.91 16 17 N -0.89 -27.37 13.53 55.43 0.75 -26.62 16 18 Si 1.07 25.13 29.90 -169.99 -5.08 20.05 16 19 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 C 0.06 1.05 4.41 -67.71 -0.30 0.75 16 23 C -0.22 -2.88 7.28 -26.73 -0.19 -3.08 16 24 C -0.21 -3.12 8.50 -26.73 -0.23 -3.35 16 25 C -0.09 -1.31 9.73 -39.58 -0.39 -1.70 16 26 C -0.12 -1.45 8.71 -39.58 -0.34 -1.79 16 27 H 0.06 0.47 7.39 -51.93 -0.38 0.08 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.62 7.88 -51.93 -0.41 0.21 16 31 H 0.06 0.53 7.39 -51.93 -0.38 0.14 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.11 1.11 7.95 -52.49 -0.42 0.70 16 35 H 0.12 1.44 5.01 -52.49 -0.26 1.17 16 36 H 0.05 0.64 5.41 -51.93 -0.28 0.36 16 37 H 0.08 1.13 7.57 -51.93 -0.39 0.73 16 38 H 0.03 0.68 5.70 -51.93 -0.30 0.38 16 39 H 0.06 1.32 7.60 -51.93 -0.39 0.93 16 40 H 0.35 7.93 7.97 45.56 0.36 8.30 16 41 H 0.29 8.95 6.47 -40.82 -0.26 8.69 16 42 H 0.12 2.29 7.94 -51.93 -0.41 1.88 16 43 H 0.10 1.27 3.89 -51.93 -0.20 1.06 16 44 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 46 H 0.09 1.44 6.42 -51.93 -0.33 1.11 16 47 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 48 H 0.12 1.25 7.10 -52.49 -0.37 0.88 16 LS Contribution 367.99 15.07 5.55 5.55 Total: -1.00 -30.22 367.99 -10.55 -40.77 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: -7.02 Total: 12.97 kcal Atomic # 6 Polarization: -24.94 SS G_CDS: -3.34 Total: -28.28 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: -0.30 Total: -36.52 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.35 Total: -14.53 kcal Atomic # 14 Polarization: 25.13 SS G_CDS: -5.08 Total: 20.05 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.22 -10.55 -40.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809571002.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.612 kcal (2) G-P(sol) polarization free energy of solvation -30.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds