Wall clock time and date at job start Tue Mar 31 2020 08:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47106 * 2 1 4 4 C 1.50699 * 109.47331 * 120.00374 * 2 1 3 5 5 C 1.38224 * 119.99992 * 120.00251 * 4 2 1 6 6 C 1.38241 * 119.99755 * 180.02562 * 5 4 2 7 7 C 1.38229 * 120.00063 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00044 * 179.97438 * 7 6 5 9 9 N 1.46901 * 109.47467 * 97.85208 * 8 7 6 10 10 C 1.46897 * 111.00151 * 159.29360 * 9 8 7 11 11 C 1.53001 * 109.47241 * 199.15638 * 10 9 8 12 12 H 1.08998 * 109.46730 * 60.00175 * 11 10 9 13 13 O 1.42895 * 109.47025 * 300.00328 * 11 10 9 14 14 C 1.50694 * 109.47146 * 179.97438 * 11 10 9 15 15 H 1.08001 * 120.00300 * 0.02562 * 14 11 10 16 16 C 1.37875 * 119.99914 * 179.97438 * 14 11 10 17 17 N 1.31514 * 120.00021 * 0.02562 * 16 14 11 18 18 Si 1.86804 * 120.00107 * 179.97438 * 16 14 11 19 19 H 1.48498 * 109.47484 * 270.00289 * 18 16 14 20 20 H 1.48501 * 109.46920 * 30.00360 * 18 16 14 21 21 H 1.48504 * 109.46801 * 150.00012 * 18 16 14 22 22 C 1.46906 * 110.99787 * 283.24733 * 9 8 7 23 23 C 1.52998 * 117.49734 * 347.13927 * 22 9 8 24 24 C 1.52997 * 117.49598 * 278.51571 * 22 9 8 25 25 C 1.38230 * 120.00110 * 0.24670 * 7 6 5 26 26 C 1.38235 * 119.99471 * 300.02106 * 4 2 1 27 27 H 1.09002 * 109.47274 * 299.99669 * 1 2 3 28 28 H 1.08995 * 109.47255 * 59.99871 * 1 2 3 29 29 H 1.09004 * 109.46782 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47274 * 240.00331 * 2 1 3 31 31 H 1.09002 * 109.46784 * 60.00031 * 3 2 1 32 32 H 1.08993 * 109.47352 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.46977 * 300.00309 * 3 2 1 34 34 H 1.08001 * 120.00308 * 359.97438 * 5 4 2 35 35 H 1.08002 * 119.99795 * 179.97438 * 6 5 4 36 36 H 1.09005 * 109.47154 * 337.84930 * 8 7 6 37 37 H 1.09004 * 109.46994 * 217.85113 * 8 7 6 38 38 H 1.09002 * 109.47286 * 79.15564 * 10 9 8 39 39 H 1.09005 * 109.47191 * 319.16121 * 10 9 8 40 40 H 0.96707 * 114.00188 * 299.99564 * 13 11 10 41 41 H 0.96998 * 120.00216 * 359.97438 * 17 16 14 42 42 H 1.08997 * 115.54739 * 132.84333 * 22 9 8 43 43 H 1.09004 * 117.50024 * 359.97438 * 23 22 9 44 44 H 1.09001 * 117.50208 * 145.02143 * 23 22 9 45 45 H 1.09004 * 117.49920 * 214.97742 * 24 22 9 46 46 H 1.08999 * 117.50575 * 359.97438 * 24 22 9 47 47 H 1.08001 * 120.00466 * 179.73075 * 25 7 6 48 48 H 1.07996 * 120.00518 * 359.97438 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 2.8271 -1.8343 1.1035 6 6 3.2875 -2.4863 2.2322 7 6 2.9527 -2.0147 3.4877 8 6 3.4541 -2.7258 4.7181 9 7 4.6480 -2.0388 5.2285 10 6 4.8792 -2.3649 6.6420 11 6 5.7961 -1.3105 7.2653 12 1 5.3255 -0.3302 7.1909 13 8 7.0443 -1.2938 6.5700 14 6 6.0327 -1.6448 8.7156 15 1 5.5753 -2.5218 9.1492 16 6 6.8341 -0.8316 9.4885 17 7 7.3915 0.2360 8.9604 18 14 7.1269 -1.2455 11.2865 19 1 6.0859 -0.5930 12.1206 20 1 7.0598 -2.7172 11.4728 21 1 8.4678 -0.7554 11.6952 22 6 5.8281 -2.3592 4.4144 23 6 5.7111 -3.5230 3.4281 24 6 6.5462 -3.6796 4.7005 25 6 2.1533 -0.8942 3.6146 26 6 1.6980 -0.2384 2.4859 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 3.0877 -2.2034 0.1225 35 1 3.9081 -3.3646 2.1330 36 1 3.7077 -3.7553 4.4648 37 1 2.6772 -2.7206 5.4827 38 1 5.3497 -3.3453 6.7164 39 1 3.9269 -2.3777 7.1724 40 1 7.5196 -2.1356 6.5945 41 1 7.2392 0.4512 8.0269 42 1 6.4400 -1.5074 4.1179 43 1 4.7586 -4.0511 3.3835 44 1 6.2460 -3.4369 2.4823 45 1 7.6307 -3.6965 4.5917 46 1 6.1434 -4.3103 5.4929 47 1 1.8880 -0.5282 4.5955 48 1 1.0772 0.6396 2.5851 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809571002.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:28:17 Heat of formation + Delta-G solvation = -17.664818 kcal Electronic energy + Delta-G solvation = -25228.473185 eV Core-core repulsion = 21862.158174 eV Total energy + Delta-G solvation = -3366.315011 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.11060 -39.86068 -37.65287 -36.35543 -34.44403 -34.21069 -31.83872 -31.76327 -29.53120 -27.96967 -26.87212 -25.61941 -24.30073 -23.74769 -22.96644 -22.43679 -20.89780 -20.34922 -19.32885 -18.04850 -17.43032 -16.90416 -16.34738 -16.05789 -15.91022 -15.67863 -15.65071 -15.26528 -14.83311 -14.54533 -14.40644 -14.40296 -14.13316 -13.87003 -13.51197 -13.26620 -13.12687 -13.02788 -12.80646 -12.61090 -12.50781 -12.27598 -12.14942 -11.98127 -11.93145 -11.76671 -11.65982 -11.47924 -11.26197 -11.17227 -10.92251 -10.60932 -10.01344 -9.73605 -9.41323 -9.12581 -8.58739 -6.43715 0.46454 0.57865 1.52576 1.61180 1.78655 2.55075 2.73792 2.90196 3.19300 3.23149 3.73174 3.80114 3.85515 3.93170 4.00104 4.06416 4.11491 4.16718 4.21355 4.32261 4.34726 4.38415 4.51008 4.54986 4.57851 4.66548 4.72052 4.78089 4.81317 4.88097 4.98246 5.00185 5.01284 5.10367 5.16589 5.22950 5.24537 5.29861 5.37207 5.39587 5.51601 5.60129 5.77650 5.79588 5.83092 6.07969 6.17595 6.24287 6.27858 6.58889 7.24142 7.53905 8.78446 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.021591 B = 0.003192 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.519338 B = 8769.148932 C = 9318.450307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.054 4.054 3 C -0.144 4.144 4 C -0.084 4.084 5 C -0.126 4.126 6 C -0.118 4.118 7 C -0.082 4.082 8 C 0.084 3.916 9 N -0.510 5.510 10 C 0.052 3.948 11 C 0.228 3.772 12 H 0.011 0.989 13 O -0.578 6.578 14 C -0.658 4.658 15 H 0.049 0.951 16 C -0.018 4.018 17 N -0.922 5.922 18 Si 1.118 2.882 19 H -0.275 1.275 20 H -0.269 1.269 21 H -0.285 1.285 22 C 0.035 3.965 23 C -0.181 4.181 24 C -0.207 4.207 25 C -0.115 4.115 26 C -0.124 4.124 27 H 0.052 0.948 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.086 0.914 31 H 0.051 0.949 32 H 0.046 0.954 33 H 0.072 0.928 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.040 0.960 39 H 0.062 0.938 40 H 0.355 0.645 41 H 0.268 0.732 42 H 0.096 0.904 43 H 0.114 0.886 44 H 0.112 0.888 45 H 0.101 0.899 46 H 0.086 0.914 47 H 0.109 0.891 48 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.812 -6.522 -18.910 23.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.072 4.072 3 C -0.201 4.201 4 C -0.084 4.084 5 C -0.144 4.144 6 C -0.136 4.136 7 C -0.083 4.083 8 C -0.043 4.043 9 N -0.232 5.232 10 C -0.075 4.075 11 C 0.170 3.830 12 H 0.029 0.971 13 O -0.383 6.383 14 C -0.696 4.696 15 H 0.068 0.932 16 C -0.220 4.220 17 N -0.558 5.558 18 Si 0.940 3.060 19 H -0.201 1.201 20 H -0.194 1.194 21 H -0.211 1.211 22 C -0.073 4.073 23 C -0.218 4.218 24 C -0.245 4.245 25 C -0.133 4.133 26 C -0.142 4.142 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.105 0.895 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.091 0.909 34 H 0.158 0.842 35 H 0.157 0.843 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.058 0.942 39 H 0.081 0.919 40 H 0.200 0.800 41 H 0.078 0.922 42 H 0.114 0.886 43 H 0.131 0.869 44 H 0.130 0.870 45 H 0.119 0.881 46 H 0.104 0.896 47 H 0.127 0.873 48 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -11.330 -4.877 -17.703 21.577 hybrid contribution -0.354 -1.511 -0.709 1.707 sum -11.684 -6.389 -18.412 22.723 Atomic orbital electron populations 1.21835 0.93652 1.01973 1.02359 1.20156 0.96460 0.95902 0.94697 1.21856 1.00739 0.95197 1.02331 1.20102 0.97509 0.95821 0.94953 1.21281 0.98250 0.95812 0.99044 1.21453 0.99596 1.00945 0.91634 1.19705 0.97605 0.96557 0.94385 1.21244 0.92233 0.95759 0.95081 1.61978 1.02199 1.57485 1.01544 1.22694 0.99570 0.97908 0.87361 1.19231 0.81479 0.93273 0.89006 0.97094 1.86455 1.36199 1.38252 1.77394 1.22845 1.35459 1.13723 0.97568 0.93239 1.27272 0.92483 0.92659 1.09558 1.70734 1.42190 1.26211 1.16619 0.82945 0.76782 0.76329 0.69976 1.20058 1.19377 1.21106 1.22504 0.94176 0.91110 0.99550 1.23734 1.02040 1.01390 0.94593 1.23329 0.99862 1.01438 0.99898 1.21080 0.98092 0.95446 0.98718 1.21058 1.00958 1.00151 0.92028 0.92893 0.91047 0.92759 0.89518 0.93036 0.93478 0.90889 0.84237 0.84348 0.92140 0.90865 0.94175 0.91931 0.79988 0.92189 0.88632 0.86864 0.86977 0.88079 0.89566 0.87268 0.85582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.01 71.98 0.65 -1.30 16 2 C -0.05 -0.86 3.09 -11.54 -0.04 -0.89 16 3 C -0.14 -2.30 9.01 71.98 0.65 -1.65 16 4 C -0.08 -1.78 4.78 -19.87 -0.09 -1.88 16 5 C -0.13 -2.65 9.67 22.27 0.22 -2.44 16 6 C -0.12 -2.77 8.66 22.27 0.19 -2.58 16 7 C -0.08 -2.27 5.13 -19.87 -0.10 -2.37 16 8 C 0.08 2.46 4.91 85.56 0.42 2.88 16 9 N -0.51 -18.44 4.60 -875.51 -4.03 -22.47 16 10 C 0.05 2.16 4.63 86.30 0.40 2.56 16 11 C 0.23 11.85 2.70 29.85 0.08 11.93 16 12 H 0.01 0.67 8.01 -2.39 -0.02 0.65 16 13 O -0.58 -29.61 9.92 -148.98 -1.48 -31.08 16 14 C -0.66 -36.98 8.76 25.60 0.22 -36.76 16 15 H 0.05 2.70 7.74 -2.91 -0.02 2.68 16 16 C -0.02 -1.03 5.40 84.65 0.46 -0.57 16 17 N -0.92 -58.05 13.53 21.45 0.29 -57.76 16 18 Si 1.12 50.39 29.90 68.60 2.05 52.44 16 19 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 20 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 21 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 22 C 0.04 1.18 4.41 44.91 0.20 1.37 16 23 C -0.18 -4.39 7.28 30.59 0.22 -4.17 16 24 C -0.21 -5.94 8.50 30.59 0.26 -5.68 16 25 C -0.11 -3.25 9.73 22.27 0.22 -3.03 16 26 C -0.12 -3.01 8.71 22.27 0.19 -2.82 16 27 H 0.05 0.78 7.39 -2.39 -0.02 0.76 16 28 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 30 H 0.09 1.18 7.88 -2.39 -0.02 1.16 16 31 H 0.05 0.88 7.39 -2.39 -0.02 0.86 16 32 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.14 2.21 7.95 -2.91 -0.02 2.18 16 35 H 0.14 2.76 5.01 -2.91 -0.01 2.75 16 36 H 0.06 1.58 5.41 -2.38 -0.01 1.57 16 37 H 0.07 2.17 7.57 -2.39 -0.02 2.15 16 38 H 0.04 1.61 5.70 -2.39 -0.01 1.59 16 39 H 0.06 2.59 7.60 -2.38 -0.02 2.57 16 40 H 0.35 16.59 7.97 -74.05 -0.59 16.00 16 41 H 0.27 17.50 6.47 -92.71 -0.60 16.90 16 42 H 0.10 3.68 7.94 -2.39 -0.02 3.66 16 43 H 0.11 2.49 3.89 -2.38 -0.01 2.48 16 44 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 45 H 0.10 2.76 8.14 -2.38 -0.02 2.74 16 46 H 0.09 2.59 6.42 -2.39 -0.02 2.57 16 47 H 0.11 3.21 8.06 -2.91 -0.02 3.19 16 48 H 0.13 2.70 7.10 -2.91 -0.02 2.68 16 Total: -1.00 -66.69 367.99 1.51 -65.18 By element: Atomic # 1 Polarization: 40.54 SS G_CDS: 0.53 Total: 41.07 kcal Atomic # 6 Polarization: -51.53 SS G_CDS: 4.15 Total: -47.38 kcal Atomic # 7 Polarization: -76.49 SS G_CDS: -3.74 Total: -80.22 kcal Atomic # 8 Polarization: -29.61 SS G_CDS: -1.48 Total: -31.08 kcal Atomic # 14 Polarization: 50.39 SS G_CDS: 2.05 Total: 52.44 kcal Total: -66.69 1.51 -65.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809571002.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.513 kcal (2) G-P(sol) polarization free energy of solvation -66.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds