Wall clock time and date at job start Tue Mar 31 2020 09:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46851 * 2 1 4 4 C 1.52992 * 109.47233 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47579 * 180.02562 * 4 3 2 6 6 H 1.09003 * 109.46765 * 304.99810 * 5 4 3 7 7 C 1.52995 * 109.47209 * 184.99927 * 5 4 3 8 8 N 1.46493 * 109.46894 * 64.99776 * 5 4 3 9 9 C 1.46500 * 120.00159 * 60.00687 * 8 5 4 10 10 C 1.34782 * 120.00060 * 240.00136 * 8 5 4 11 11 O 1.21282 * 119.99847 * 0.02562 * 10 8 5 12 12 C 1.50698 * 120.00035 * 180.02562 * 10 8 5 13 13 C 1.50697 * 109.47171 * 180.02562 * 12 10 8 14 14 C 1.37641 * 120.12674 * 264.99875 * 13 12 10 15 15 C 1.38611 * 120.24322 * 180.29606 * 14 13 12 16 16 C 1.38650 * 120.50633 * 359.44680 * 15 14 13 17 17 C 1.37602 * 120.24478 * 0.55723 * 16 15 14 18 18 C 1.40702 * 120.12809 * 85.02125 * 13 12 10 19 19 C 1.41392 * 120.24358 * 359.96183 * 18 13 12 20 20 H 1.08004 * 120.00116 * 334.05342 * 19 18 13 21 21 C 1.39940 * 120.00247 * 154.06033 * 19 18 13 22 22 N 1.30822 * 119.99912 * 343.59462 * 21 19 18 23 23 Si 1.86803 * 120.00192 * 163.60565 * 21 19 18 24 24 H 1.48494 * 109.47516 * 89.99468 * 23 21 19 25 25 H 1.48504 * 109.46852 * 209.99866 * 23 21 19 26 26 H 1.48504 * 109.47021 * 329.99095 * 23 21 19 27 27 H 1.09001 * 109.47067 * 60.00214 * 1 2 3 28 28 H 1.08998 * 109.46773 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47571 * 299.99518 * 1 2 3 30 30 H 1.08999 * 109.47056 * 240.00565 * 2 1 3 31 31 H 1.09001 * 109.47067 * 119.99786 * 2 1 3 32 32 H 1.09006 * 109.47054 * 59.99787 * 3 2 1 33 33 H 1.09006 * 109.46847 * 300.00138 * 3 2 1 34 34 H 1.09006 * 109.47311 * 59.99900 * 4 3 2 35 35 H 1.09002 * 109.47491 * 300.00550 * 4 3 2 36 36 H 1.08996 * 109.47473 * 299.99855 * 7 5 4 37 37 H 1.09006 * 109.47304 * 60.00365 * 7 5 4 38 38 H 1.09000 * 109.46928 * 179.97438 * 7 5 4 39 39 H 1.09013 * 109.46851 * 269.99717 * 9 8 5 40 40 H 1.08996 * 109.47268 * 29.99141 * 9 8 5 41 41 H 1.08999 * 109.47202 * 150.00011 * 9 8 5 42 42 H 1.09002 * 109.47068 * 60.00096 * 12 10 8 43 43 H 1.09001 * 109.47029 * 300.00452 * 12 10 8 44 44 H 1.08000 * 119.87347 * 0.02578 * 14 13 12 45 45 H 1.08004 * 119.74509 * 179.70911 * 15 14 13 46 46 H 1.07998 * 119.87799 * 180.30323 * 16 15 14 47 47 H 1.08008 * 120.12373 * 179.75074 * 17 16 15 48 48 H 0.97001 * 120.00439 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0799 2.8852 0.0000 6 1 3.6449 3.4247 -0.8414 7 6 5.6046 2.8871 -0.1263 8 7 3.6928 3.5393 1.2523 9 6 4.1549 3.0001 2.5337 10 6 2.9117 4.6374 1.2256 11 8 2.5289 5.0836 0.1648 12 6 2.5140 5.3107 2.5138 13 6 1.6465 6.5048 2.2095 14 6 2.2065 7.7583 2.1111 15 6 1.4100 8.8592 1.8374 16 6 0.0445 8.7105 1.6485 17 6 -0.5368 7.4669 1.7423 18 6 0.2611 6.3427 2.0254 19 6 -0.3252 5.0598 2.1238 20 1 0.2663 4.1789 1.9223 21 6 -1.6718 4.9315 2.4822 22 7 -2.3013 5.9381 3.0316 23 14 -2.5705 3.3226 2.1763 24 1 -2.4278 2.4423 3.3636 25 1 -4.0096 3.5978 1.9342 26 1 -1.9886 2.6489 0.9877 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6765 1.9564 0.8900 33 1 1.6765 1.9563 -0.8900 34 1 3.9329 0.9289 -0.8909 35 1 3.9337 0.9286 0.8891 36 1 6.0396 2.3476 0.7149 37 1 5.8927 2.4003 -1.0582 38 1 5.9679 3.9148 -0.1263 39 1 3.4324 2.2722 2.9032 40 1 5.1214 2.5153 2.3966 41 1 4.2543 3.8115 3.2547 42 1 3.4085 5.6367 3.0446 43 1 1.9589 4.6076 3.1349 44 1 3.2697 7.8851 2.2520 45 1 1.8572 9.8398 1.7666 46 1 -0.5658 9.5746 1.4309 47 1 -1.6013 7.3538 1.5988 48 1 -3.2348 5.8493 3.2796 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000811960305.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:07:50 Heat of formation + Delta-G solvation = -44.202694 kcal Electronic energy + Delta-G solvation = -25962.283436 eV Core-core repulsion = 22594.817656 eV Total energy + Delta-G solvation = -3367.465779 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.66781 -37.58758 -36.38996 -34.63202 -33.57106 -32.40684 -31.08417 -29.39498 -28.83637 -26.77628 -26.56361 -24.96846 -24.00182 -21.40365 -20.88578 -20.83057 -19.56770 -18.42286 -17.09770 -16.74171 -15.69223 -15.57877 -15.11918 -14.95617 -14.44299 -14.01547 -13.79413 -13.62781 -13.40123 -13.07985 -12.82547 -12.57927 -12.50681 -12.34355 -12.31225 -12.15311 -11.88044 -11.62834 -11.52786 -11.23268 -11.09849 -11.01793 -10.97936 -10.88121 -10.67924 -10.59612 -10.42814 -10.40923 -10.32846 -9.42706 -9.31490 -9.11149 -9.01020 -8.23800 -7.25677 -7.23201 -6.69106 -4.28715 2.82354 3.01133 3.08645 3.13977 3.30809 3.39473 3.51134 3.97061 4.67983 4.71496 5.04661 5.08943 5.17961 5.26330 5.33386 5.41575 5.48219 5.49630 5.61179 5.68469 5.75483 5.81645 5.84725 5.89322 5.94813 5.99441 6.03775 6.08682 6.14115 6.22342 6.27914 6.33345 6.35468 6.45096 6.49037 6.56069 6.58990 6.84701 6.99237 7.13834 7.34915 7.47700 7.69055 7.87507 7.99256 8.13042 8.18377 8.37077 8.70198 8.92330 8.97318 9.07205 10.25208 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.010537 B = 0.006639 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2656.597946 B = 4216.351115 C = 6313.961291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.119 4.119 3 C -0.120 4.120 4 C -0.124 4.124 5 C 0.133 3.867 6 H 0.099 0.901 7 C -0.159 4.159 8 N -0.623 5.623 9 C 0.081 3.919 10 C 0.518 3.482 11 O -0.521 6.521 12 C -0.069 4.069 13 C -0.180 4.180 14 C -0.082 4.082 15 C -0.240 4.240 16 C -0.108 4.108 17 C -0.159 4.159 18 C 0.129 3.871 19 C -0.453 4.453 20 H 0.073 0.927 21 C 0.078 3.922 22 N -0.796 5.796 23 Si 0.895 3.105 24 H -0.270 1.270 25 H -0.276 1.276 26 H -0.258 1.258 27 H 0.054 0.946 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.055 0.945 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.052 0.948 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.094 0.906 44 H 0.083 0.917 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.116 0.884 48 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.933 -10.643 -1.337 14.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.157 4.157 3 C -0.158 4.158 4 C -0.162 4.162 5 C 0.029 3.971 6 H 0.117 0.883 7 C -0.217 4.217 8 N -0.359 5.359 9 C -0.063 4.063 10 C 0.307 3.693 11 O -0.395 6.395 12 C -0.108 4.108 13 C -0.182 4.182 14 C -0.100 4.100 15 C -0.259 4.259 16 C -0.126 4.126 17 C -0.178 4.178 18 C 0.127 3.873 19 C -0.483 4.483 20 H 0.092 0.908 21 C -0.139 4.139 22 N -0.422 5.422 23 Si 0.720 3.280 24 H -0.195 1.195 25 H -0.201 1.201 26 H -0.181 1.181 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.113 0.887 44 H 0.101 0.899 45 H 0.103 0.897 46 H 0.103 0.897 47 H 0.134 0.866 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 9.476 -10.325 -1.810 14.131 hybrid contribution -0.480 -0.745 0.025 0.887 sum 8.996 -11.070 -1.785 14.376 Atomic orbital electron populations 1.21801 0.95983 1.01017 1.02470 1.21495 0.95885 0.97082 1.01191 1.21585 0.94696 0.96258 1.03227 1.21930 0.96391 0.96104 1.01802 1.21003 0.94174 0.93249 0.88630 0.88316 1.22122 0.95782 1.02155 1.01641 1.48001 1.52430 1.29312 1.06171 1.21674 0.99319 0.99639 0.85665 1.21214 0.76535 0.79045 0.92497 1.90658 1.52800 1.63423 1.32571 1.20292 0.98845 0.97503 0.94176 1.19091 0.94292 0.91720 1.13086 1.20287 0.96562 0.92992 1.00157 1.20292 0.94192 0.96511 1.14902 1.20666 0.94291 0.96591 1.01059 1.21279 0.99927 0.91859 1.04779 1.17327 0.89912 0.93194 0.86892 1.19436 0.94519 0.93377 1.40986 0.90844 1.25853 0.97759 0.97842 0.92466 1.69820 1.11563 1.31882 1.28936 0.86514 0.78947 0.82532 0.80041 1.19550 1.20141 1.18135 0.92691 0.93174 0.92515 0.92548 0.92471 0.91402 0.91873 0.91517 0.91989 0.92572 0.91913 0.92381 0.92989 0.91706 0.90988 0.90836 0.88744 0.89882 0.89742 0.89651 0.86613 0.91046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 9.91 37.16 0.37 -1.67 16 2 C -0.12 -1.44 5.93 -26.73 -0.16 -1.59 16 3 C -0.12 -1.70 5.10 -26.73 -0.14 -1.84 16 4 C -0.12 -1.45 4.64 -26.73 -0.12 -1.58 16 5 C 0.13 1.81 2.64 -67.93 -0.18 1.63 16 6 H 0.10 1.63 6.90 -51.93 -0.36 1.27 16 7 C -0.16 -1.70 9.17 37.15 0.34 -1.36 16 8 N -0.62 -9.43 2.21 -173.93 -0.39 -9.81 16 9 C 0.08 0.92 9.20 59.85 0.55 1.47 16 10 C 0.52 10.28 7.31 -10.98 -0.08 10.20 16 11 O -0.52 -12.60 15.36 5.56 0.09 -12.52 16 12 C -0.07 -1.37 3.73 -29.04 -0.11 -1.48 16 13 C -0.18 -4.41 4.43 -103.91 -0.46 -4.87 16 14 C -0.08 -1.93 9.66 -39.66 -0.38 -2.31 16 15 C -0.24 -5.69 10.05 -39.29 -0.39 -6.09 16 16 C -0.11 -2.67 10.02 -39.66 -0.40 -3.07 16 17 C -0.16 -4.32 8.68 -38.87 -0.34 -4.66 16 18 C 0.13 3.50 5.56 -106.83 -0.59 2.90 16 19 C -0.45 -12.02 8.14 -37.75 -0.31 -12.32 16 20 H 0.07 1.90 6.68 -52.48 -0.35 1.55 16 21 C 0.08 1.98 5.16 -17.34 -0.09 1.89 16 22 N -0.80 -20.80 10.97 55.55 0.61 -20.19 16 23 Si 0.90 18.99 29.59 -169.99 -5.03 13.96 16 24 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 25 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 26 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.07 1.13 7.75 -51.93 -0.40 0.73 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.66 7.51 -51.93 -0.39 0.27 16 36 H 0.06 0.52 6.66 -51.93 -0.35 0.17 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.05 0.58 8.14 -51.92 -0.42 0.15 16 40 H 0.06 0.59 6.43 -51.93 -0.33 0.25 16 41 H 0.07 0.78 6.44 -51.93 -0.33 0.45 16 42 H 0.07 1.25 7.31 -51.93 -0.38 0.87 16 43 H 0.09 1.88 7.02 -51.93 -0.36 1.51 16 44 H 0.08 1.73 8.06 -52.49 -0.42 1.31 16 45 H 0.08 1.78 8.06 -52.48 -0.42 1.36 16 46 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 47 H 0.12 3.23 6.22 -52.48 -0.33 2.90 16 48 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 LS Contribution 381.63 15.07 5.75 5.75 Total: -1.00 -30.36 381.63 -9.68 -40.04 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -8.22 Total: 7.51 kcal Atomic # 6 Polarization: -22.26 SS G_CDS: -2.49 Total: -24.75 kcal Atomic # 7 Polarization: -30.22 SS G_CDS: 0.22 Total: -30.00 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.09 Total: -12.52 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.96 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.36 -9.68 -40.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811960305.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.162 kcal (2) G-P(sol) polarization free energy of solvation -30.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds