Wall clock time and date at job start Tue Mar 31 2020 09:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46851 * 2 1 4 4 C 1.52992 * 109.47233 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47579 * 180.02562 * 4 3 2 6 6 H 1.09003 * 109.46765 * 304.99810 * 5 4 3 7 7 C 1.52995 * 109.47209 * 184.99927 * 5 4 3 8 8 N 1.46493 * 109.46894 * 64.99776 * 5 4 3 9 9 C 1.46500 * 120.00159 * 60.00687 * 8 5 4 10 10 C 1.34782 * 120.00060 * 240.00136 * 8 5 4 11 11 O 1.21282 * 119.99847 * 0.02562 * 10 8 5 12 12 C 1.50698 * 120.00035 * 180.02562 * 10 8 5 13 13 C 1.50697 * 109.47171 * 180.02562 * 12 10 8 14 14 C 1.37641 * 120.12674 * 264.99875 * 13 12 10 15 15 C 1.38611 * 120.24322 * 180.29606 * 14 13 12 16 16 C 1.38650 * 120.50633 * 359.44680 * 15 14 13 17 17 C 1.37602 * 120.24478 * 0.55723 * 16 15 14 18 18 C 1.40702 * 120.12809 * 85.02125 * 13 12 10 19 19 C 1.41392 * 120.24358 * 359.96183 * 18 13 12 20 20 H 1.08004 * 120.00116 * 334.05342 * 19 18 13 21 21 C 1.39940 * 120.00247 * 154.06033 * 19 18 13 22 22 N 1.30822 * 119.99912 * 343.59462 * 21 19 18 23 23 Si 1.86803 * 120.00192 * 163.60565 * 21 19 18 24 24 H 1.48494 * 109.47516 * 89.99468 * 23 21 19 25 25 H 1.48504 * 109.46852 * 209.99866 * 23 21 19 26 26 H 1.48504 * 109.47021 * 329.99095 * 23 21 19 27 27 H 1.09001 * 109.47067 * 60.00214 * 1 2 3 28 28 H 1.08998 * 109.46773 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47571 * 299.99518 * 1 2 3 30 30 H 1.08999 * 109.47056 * 240.00565 * 2 1 3 31 31 H 1.09001 * 109.47067 * 119.99786 * 2 1 3 32 32 H 1.09006 * 109.47054 * 59.99787 * 3 2 1 33 33 H 1.09006 * 109.46847 * 300.00138 * 3 2 1 34 34 H 1.09006 * 109.47311 * 59.99900 * 4 3 2 35 35 H 1.09002 * 109.47491 * 300.00550 * 4 3 2 36 36 H 1.08996 * 109.47473 * 299.99855 * 7 5 4 37 37 H 1.09006 * 109.47304 * 60.00365 * 7 5 4 38 38 H 1.09000 * 109.46928 * 179.97438 * 7 5 4 39 39 H 1.09013 * 109.46851 * 269.99717 * 9 8 5 40 40 H 1.08996 * 109.47268 * 29.99141 * 9 8 5 41 41 H 1.08999 * 109.47202 * 150.00011 * 9 8 5 42 42 H 1.09002 * 109.47068 * 60.00096 * 12 10 8 43 43 H 1.09001 * 109.47029 * 300.00452 * 12 10 8 44 44 H 1.08000 * 119.87347 * 0.02578 * 14 13 12 45 45 H 1.08004 * 119.74509 * 179.70911 * 15 14 13 46 46 H 1.07998 * 119.87799 * 180.30323 * 16 15 14 47 47 H 1.08008 * 120.12373 * 179.75074 * 17 16 15 48 48 H 0.97001 * 120.00439 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0799 2.8852 0.0000 6 1 3.6449 3.4247 -0.8414 7 6 5.6046 2.8871 -0.1263 8 7 3.6928 3.5393 1.2523 9 6 4.1549 3.0001 2.5337 10 6 2.9117 4.6374 1.2256 11 8 2.5289 5.0836 0.1648 12 6 2.5140 5.3107 2.5138 13 6 1.6465 6.5048 2.2095 14 6 2.2065 7.7583 2.1111 15 6 1.4100 8.8592 1.8374 16 6 0.0445 8.7105 1.6485 17 6 -0.5368 7.4669 1.7423 18 6 0.2611 6.3427 2.0254 19 6 -0.3252 5.0598 2.1238 20 1 0.2663 4.1789 1.9223 21 6 -1.6718 4.9315 2.4822 22 7 -2.3013 5.9381 3.0316 23 14 -2.5705 3.3226 2.1763 24 1 -2.4278 2.4423 3.3636 25 1 -4.0096 3.5978 1.9342 26 1 -1.9886 2.6489 0.9877 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6765 1.9564 0.8900 33 1 1.6765 1.9563 -0.8900 34 1 3.9329 0.9289 -0.8909 35 1 3.9337 0.9286 0.8891 36 1 6.0396 2.3476 0.7149 37 1 5.8927 2.4003 -1.0582 38 1 5.9679 3.9148 -0.1263 39 1 3.4324 2.2722 2.9032 40 1 5.1214 2.5153 2.3966 41 1 4.2543 3.8115 3.2547 42 1 3.4085 5.6367 3.0446 43 1 1.9589 4.6076 3.1349 44 1 3.2697 7.8851 2.2520 45 1 1.8572 9.8398 1.7666 46 1 -0.5658 9.5746 1.4309 47 1 -1.6013 7.3538 1.5988 48 1 -3.2348 5.8493 3.2796 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000811960305.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:07:50 Heat of formation + Delta-G solvation = -58.600352 kcal Electronic energy + Delta-G solvation = -25962.907765 eV Core-core repulsion = 22594.817656 eV Total energy + Delta-G solvation = -3368.090108 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.09174 -39.33537 -37.77241 -35.79210 -35.50984 -33.83060 -32.56109 -31.33928 -29.83931 -28.46339 -27.66417 -26.86483 -25.05432 -22.89385 -22.71176 -21.93040 -21.14962 -19.76892 -19.04582 -18.12296 -17.33403 -16.91668 -16.58473 -16.34191 -16.06389 -15.44066 -15.32709 -15.04409 -14.58167 -14.49214 -14.35884 -14.06853 -13.82731 -13.50564 -13.41469 -13.30814 -13.29252 -13.06967 -12.88077 -12.83130 -12.76143 -12.63405 -12.49441 -12.24659 -12.14084 -11.98983 -11.66050 -11.47288 -11.44506 -11.32161 -11.20189 -11.03405 -10.60266 -9.47378 -9.23017 -9.15598 -8.61021 -6.29401 0.98352 1.12692 1.31082 1.42323 1.50233 1.87526 2.17039 2.24711 2.77148 3.62859 3.76431 4.00482 4.07346 4.08643 4.27058 4.30665 4.35061 4.39073 4.44108 4.46466 4.54527 4.59075 4.70124 4.75117 4.77354 4.79022 4.80747 4.90641 4.91415 4.96646 5.03772 5.08321 5.09930 5.18431 5.19859 5.24823 5.35041 5.36628 5.39468 5.49451 5.54473 5.76756 5.84359 6.03593 6.16429 6.20912 6.41871 6.55619 6.73720 6.99074 7.10955 7.45794 8.35585 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.010537 B = 0.006639 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2656.597946 B = 4216.351115 C = 6313.961291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.112 4.112 3 C -0.119 4.119 4 C -0.113 4.113 5 C 0.126 3.874 6 H 0.059 0.941 7 C -0.149 4.149 8 N -0.612 5.612 9 C 0.070 3.930 10 C 0.516 3.484 11 O -0.579 6.579 12 C -0.065 4.065 13 C -0.187 4.187 14 C -0.092 4.092 15 C -0.242 4.242 16 C -0.118 4.118 17 C -0.193 4.193 18 C 0.096 3.904 19 C -0.477 4.477 20 H 0.067 0.933 21 C 0.039 3.961 22 N -0.826 5.826 23 Si 0.959 3.041 24 H -0.254 1.254 25 H -0.268 1.268 26 H -0.265 1.265 27 H 0.040 0.960 28 H 0.073 0.927 29 H 0.033 0.967 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.034 0.966 33 H 0.032 0.968 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.044 0.956 39 H 0.057 0.943 40 H 0.100 0.900 41 H 0.079 0.921 42 H 0.108 0.892 43 H 0.091 0.909 44 H 0.115 0.885 45 H 0.115 0.885 46 H 0.105 0.895 47 H 0.096 0.904 48 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.462 -12.934 -0.673 17.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.149 4.149 3 C -0.157 4.157 4 C -0.151 4.151 5 C 0.023 3.977 6 H 0.078 0.922 7 C -0.207 4.207 8 N -0.346 5.346 9 C -0.071 4.071 10 C 0.305 3.695 11 O -0.458 6.458 12 C -0.105 4.105 13 C -0.189 4.189 14 C -0.110 4.110 15 C -0.261 4.261 16 C -0.136 4.136 17 C -0.213 4.213 18 C 0.094 3.906 19 C -0.507 4.507 20 H 0.085 0.915 21 C -0.175 4.175 22 N -0.453 5.453 23 Si 0.781 3.219 24 H -0.178 1.178 25 H -0.192 1.192 26 H -0.189 1.189 27 H 0.060 0.940 28 H 0.092 0.908 29 H 0.053 0.947 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.109 0.891 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.063 0.937 39 H 0.076 0.924 40 H 0.118 0.882 41 H 0.098 0.902 42 H 0.126 0.874 43 H 0.110 0.890 44 H 0.133 0.867 45 H 0.133 0.867 46 H 0.123 0.877 47 H 0.114 0.886 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 12.043 -12.645 -1.111 17.498 hybrid contribution -1.185 0.022 -0.184 1.200 sum 10.858 -12.623 -1.295 16.701 Atomic orbital electron populations 1.21846 0.97169 1.01957 1.00709 1.21468 0.94841 0.95618 1.03006 1.21548 0.96846 0.97206 1.00136 1.21884 0.94149 0.95011 1.04069 1.21171 0.96320 0.93657 0.86551 0.92231 1.22046 0.92832 1.02009 1.03771 1.48002 1.50565 1.27658 1.08390 1.21999 1.01073 1.00228 0.83840 1.21099 0.76842 0.80163 0.91357 1.90634 1.55402 1.65563 1.34154 1.20273 0.99417 0.96067 0.94697 1.19590 0.94039 0.93886 1.11367 1.20718 0.98265 0.92601 0.99457 1.20708 0.93732 0.98149 1.13481 1.20942 0.95435 0.96440 1.00786 1.21285 0.99336 0.93342 1.07301 1.17723 0.91532 0.93510 0.87880 1.19531 0.95596 0.93146 1.42395 0.91479 1.26590 0.98046 1.01135 0.91763 1.69876 1.12114 1.33709 1.29564 0.85547 0.77805 0.78575 0.80016 1.17803 1.19212 1.18889 0.94034 0.90827 0.94750 0.90447 0.90693 0.94746 0.94892 0.89095 0.89591 0.90053 0.90013 0.93727 0.92415 0.88204 0.90234 0.87398 0.89044 0.86717 0.86660 0.87665 0.88621 0.90406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.10 9.91 71.98 0.71 -3.38 16 2 C -0.11 -2.49 5.93 30.60 0.18 -2.31 16 3 C -0.12 -3.37 5.10 30.59 0.16 -3.21 16 4 C -0.11 -2.38 4.64 30.59 0.14 -2.24 16 5 C 0.13 3.28 2.64 44.99 0.12 3.40 16 6 H 0.06 2.04 6.90 -2.39 -0.02 2.02 16 7 C -0.15 -2.72 9.17 71.98 0.66 -2.06 16 8 N -0.61 -17.90 2.21 -822.59 -1.82 -19.72 16 9 C 0.07 1.40 9.20 127.77 1.18 2.57 16 10 C 0.52 20.78 7.31 87.66 0.64 21.42 16 11 O -0.58 -29.37 15.36 -3.04 -0.05 -29.41 16 12 C -0.07 -2.60 3.73 29.10 0.11 -2.49 16 13 C -0.19 -9.32 4.43 -19.40 -0.09 -9.41 16 14 C -0.09 -4.30 9.66 22.22 0.21 -4.08 16 15 C -0.24 -11.33 10.05 22.46 0.23 -11.10 16 16 C -0.12 -5.97 10.02 22.22 0.22 -5.75 16 17 C -0.19 -11.00 8.68 22.73 0.20 -10.80 16 18 C 0.10 5.42 5.56 -21.29 -0.12 5.30 16 19 C -0.48 -26.55 8.14 23.46 0.19 -26.36 16 20 H 0.07 3.69 6.68 -2.91 -0.02 3.67 16 21 C 0.04 2.05 5.16 85.26 0.44 2.49 16 22 N -0.83 -44.92 10.97 21.82 0.24 -44.68 16 23 Si 0.96 40.31 29.59 68.60 2.03 42.34 16 24 H -0.25 -9.92 7.11 99.48 0.71 -9.22 16 25 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 26 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 27 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.03 1.18 7.75 -2.38 -0.02 1.16 16 33 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 34 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 35 H 0.09 1.44 7.51 -2.39 -0.02 1.43 16 36 H 0.08 1.09 6.66 -2.39 -0.02 1.08 16 37 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 38 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 40 H 0.10 1.32 6.43 -2.39 -0.02 1.30 16 41 H 0.08 1.48 6.44 -2.39 -0.02 1.47 16 42 H 0.11 3.46 7.31 -2.39 -0.02 3.44 16 43 H 0.09 3.68 7.02 -2.39 -0.02 3.67 16 44 H 0.11 4.52 8.06 -2.91 -0.02 4.50 16 45 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 46 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 47 H 0.10 5.69 6.22 -2.91 -0.02 5.67 16 48 H 0.29 14.10 8.30 -92.71 -0.77 13.33 16 Total: -1.00 -71.58 381.63 6.50 -65.08 By element: Atomic # 1 Polarization: 33.50 SS G_CDS: 0.92 Total: 34.41 kcal Atomic # 6 Polarization: -53.20 SS G_CDS: 5.18 Total: -48.02 kcal Atomic # 7 Polarization: -62.81 SS G_CDS: -1.58 Total: -64.39 kcal Atomic # 8 Polarization: -29.37 SS G_CDS: -0.05 Total: -29.41 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 2.03 Total: 42.34 kcal Total: -71.58 6.50 -65.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811960305.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.475 kcal (2) G-P(sol) polarization free energy of solvation -71.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds