Wall clock time and date at job start Tue Mar 31 2020 08:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46818 * 2 1 4 4 C 1.50693 * 109.47284 * 119.99905 * 2 1 3 5 5 C 1.38318 * 120.05938 * 299.72706 * 4 2 1 6 6 C 1.37807 * 119.95216 * 179.84201 * 5 4 2 7 7 C 1.39609 * 120.41988 * 0.59822 * 6 5 4 8 8 C 1.38371 * 119.39191 * 359.49465 * 7 6 5 9 9 C 1.38054 * 120.05539 * 120.00358 * 4 2 1 10 10 C 1.50801 * 122.01746 * 180.48409 * 8 7 6 11 11 C 1.53050 * 109.65834 * 344.37396 * 10 8 7 12 12 C 1.53376 * 107.92881 * 47.29573 * 11 10 8 13 13 N 1.39412 * 117.65482 * 179.27775 * 7 6 5 14 14 C 1.46895 * 110.99951 * 285.60161 * 13 7 6 15 15 C 1.53010 * 109.47100 * 51.32893 * 14 13 7 16 16 O 1.42902 * 109.46809 * 63.26368 * 15 14 13 17 17 C 1.42893 * 113.99780 * 180.02562 * 16 15 14 18 18 C 1.50703 * 109.47482 * 179.97438 * 17 16 15 19 19 H 1.08001 * 119.99237 * 0.02562 * 18 17 16 20 20 C 1.37867 * 120.00413 * 179.97438 * 18 17 16 21 21 N 1.31520 * 120.00182 * 180.02562 * 20 18 17 22 22 Si 1.86807 * 120.00102 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.46981 * 89.99722 * 22 20 18 24 24 H 1.48501 * 109.47122 * 209.99859 * 22 20 18 25 25 H 1.48499 * 109.46899 * 329.99802 * 22 20 18 26 26 H 1.08997 * 109.47689 * 60.00107 * 1 2 3 27 27 H 1.09003 * 109.46866 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47257 * 299.99474 * 1 2 3 29 29 H 1.09000 * 109.46816 * 240.00298 * 2 1 3 30 30 H 1.08995 * 109.47015 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47233 * 299.99942 * 3 2 1 32 32 H 1.08999 * 109.47446 * 60.00049 * 3 2 1 33 33 H 1.07995 * 120.01907 * 0.09894 * 5 4 2 34 34 H 1.07997 * 119.78483 * 180.30652 * 6 5 4 35 35 H 1.07994 * 119.75250 * 359.87539 * 9 4 2 36 36 H 1.08998 * 109.43985 * 104.42716 * 10 8 7 37 37 H 1.08997 * 109.43779 * 224.31691 * 10 8 7 38 38 H 1.09002 * 109.76370 * 166.90084 * 11 10 8 39 39 H 1.08999 * 109.76950 * 287.63001 * 11 10 8 40 40 H 1.08998 * 109.60923 * 51.50178 * 12 11 10 41 41 H 1.08994 * 109.60666 * 171.83758 * 12 11 10 42 42 H 1.09003 * 109.47499 * 171.33139 * 14 13 7 43 43 H 1.08998 * 109.47634 * 291.33054 * 14 13 7 44 44 H 1.09002 * 109.47205 * 183.26363 * 15 14 13 45 45 H 1.08998 * 109.47058 * 303.26194 * 15 14 13 46 46 H 1.09003 * 109.47117 * 300.00127 * 17 16 15 47 47 H 1.09001 * 109.47140 * 59.99637 * 17 16 15 48 48 H 0.96999 * 120.00073 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 1.2304 5 6 1.7036 -0.2355 2.4873 6 6 2.1615 -0.8888 3.6110 7 6 2.9674 -2.0224 3.4905 8 6 3.2948 -2.4921 2.2308 9 6 2.8262 -1.8328 1.1051 10 6 4.1519 -3.7169 2.0320 11 6 4.8684 -4.0616 3.3397 12 6 3.8337 -4.0173 4.4710 13 7 3.4109 -2.6288 4.6649 14 6 4.4754 -1.8377 5.2963 15 6 4.0158 -0.3852 5.4379 16 8 2.8852 -0.3263 6.3100 17 6 2.3742 0.9930 6.5107 18 6 1.1900 0.9369 7.4410 19 1 0.8608 -0.0114 7.8395 20 6 0.5275 2.0962 7.7843 21 7 -0.5057 2.0473 8.5966 22 14 1.0973 3.7366 7.0957 23 1 0.3937 4.0076 5.8163 24 1 0.7892 4.8157 8.0683 25 1 2.5619 3.6905 6.8550 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8900 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.0851 0.6440 2.5878 34 1 1.8991 -0.5186 4.5910 35 1 3.0835 -2.2003 0.1227 36 1 3.5230 -4.5548 1.7312 37 1 4.8902 -3.5206 1.2546 38 1 5.2982 -5.0610 3.2721 39 1 5.6567 -3.3336 3.5312 40 1 2.9717 -4.6280 4.2024 41 1 4.2797 -4.3981 5.3897 42 1 4.6961 -2.2468 6.2823 43 1 5.3723 -1.8763 4.6780 44 1 4.8265 0.2137 5.8530 45 1 3.7400 0.0058 4.4585 46 1 3.1508 1.6208 6.9478 47 1 2.0643 1.4122 5.5534 48 1 -0.9721 2.8629 8.8378 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815064196.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:25:11 Heat of formation + Delta-G solvation = -22.784867 kcal Electronic energy + Delta-G solvation = -25862.642373 eV Core-core repulsion = 22496.105341 eV Total energy + Delta-G solvation = -3366.537033 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.73604 -37.94738 -36.93031 -34.52311 -33.85203 -32.56324 -30.17312 -29.41878 -29.00347 -27.43436 -27.14445 -24.53981 -23.54168 -22.34860 -21.86167 -21.78434 -20.69790 -18.57022 -16.96065 -16.43680 -16.30588 -16.01603 -15.49627 -15.20213 -14.52194 -14.38010 -14.11783 -13.99506 -13.87877 -13.55063 -13.29128 -13.04738 -12.96499 -12.70655 -12.39998 -12.29585 -12.25028 -12.07013 -11.82265 -11.43707 -11.36850 -11.21051 -11.06264 -10.94742 -10.85101 -10.72277 -10.51084 -10.38873 -10.30695 -9.86129 -9.17228 -9.03306 -8.81990 -8.52183 -8.29183 -7.52315 -6.10068 -4.08954 1.55945 1.67987 3.24421 3.31862 3.32961 3.83020 4.02783 4.36002 4.56907 4.62765 4.75800 4.84581 4.86569 4.92920 5.13406 5.19935 5.21025 5.30392 5.35024 5.42456 5.46760 5.52905 5.57939 5.61005 5.65950 5.69246 5.74307 5.79102 5.82930 5.83907 5.87808 5.96651 6.04665 6.09991 6.13764 6.16848 6.22083 6.27816 6.40755 6.58807 6.67100 6.71508 6.91525 6.98842 7.12528 7.25371 7.60236 7.71660 8.02373 8.66879 9.03174 9.49280 11.02954 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.011163 B = 0.005351 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.591467 B = 5231.521685 C = 7107.374513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.051 4.051 3 C -0.145 4.145 4 C -0.092 4.092 5 C -0.111 4.111 6 C -0.112 4.112 7 C 0.107 3.893 8 C -0.124 4.124 9 C -0.114 4.114 10 C -0.074 4.074 11 C -0.159 4.159 12 C 0.058 3.942 13 N -0.485 5.485 14 C 0.066 3.934 15 C 0.043 3.957 16 O -0.362 6.362 17 C 0.165 3.835 18 C -0.516 4.516 19 H 0.084 0.916 20 C 0.074 3.926 21 N -0.895 5.895 22 Si 0.872 3.128 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.267 1.267 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.121 0.879 34 H 0.160 0.840 35 H 0.113 0.887 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.088 0.912 43 H 0.047 0.953 44 H 0.045 0.955 45 H 0.054 0.946 46 H 0.001 0.999 47 H -0.002 1.002 48 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.179 -8.337 -17.767 22.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.070 4.070 3 C -0.202 4.202 4 C -0.093 4.093 5 C -0.130 4.130 6 C -0.131 4.131 7 C 0.010 3.990 8 C -0.127 4.127 9 C -0.133 4.133 10 C -0.111 4.111 11 C -0.198 4.198 12 C -0.070 4.070 13 N -0.201 5.201 14 C -0.059 4.059 15 C -0.035 4.035 16 O -0.280 6.280 17 C 0.090 3.910 18 C -0.554 4.554 19 H 0.102 0.898 20 C -0.128 4.128 21 N -0.533 5.533 22 Si 0.698 3.302 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.191 1.191 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.139 0.861 34 H 0.177 0.823 35 H 0.131 0.869 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.100 0.900 42 H 0.106 0.894 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.072 0.928 46 H 0.019 0.981 47 H 0.015 0.985 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.592 -8.408 -17.192 21.407 hybrid contribution 0.896 1.169 -0.930 1.742 sum 10.488 -7.239 -18.122 22.154 Atomic orbital electron populations 1.21862 0.94487 1.01944 1.01914 1.20043 0.95865 0.95815 0.95258 1.21864 1.01031 0.95398 1.01914 1.19701 0.98961 0.96078 0.94530 1.20892 1.00249 1.00274 0.91584 1.21993 0.95059 0.94820 1.01256 1.18453 0.97604 0.95308 0.87607 1.19841 1.00847 0.99175 0.92832 1.20677 0.99408 0.95961 0.97208 1.20457 0.97542 0.95404 0.97690 1.22216 0.99001 1.02164 0.96438 1.22198 0.97777 0.89068 0.97967 1.58558 1.36653 1.02029 1.22876 1.22181 0.90889 0.93426 0.99354 1.22720 0.90529 0.94955 0.95247 1.88018 1.44352 1.30484 1.65189 1.20621 0.94434 0.80569 0.95389 1.20872 1.11068 0.96297 1.27125 0.89812 1.24746 0.94662 0.98575 0.94826 1.69876 1.20167 1.28485 1.34777 0.86915 0.79707 0.84161 0.79379 1.19894 1.20799 1.19142 0.92740 0.92632 0.92117 0.91067 0.92746 0.92709 0.92187 0.86148 0.82331 0.86946 0.90889 0.91094 0.90888 0.91516 0.90206 0.89999 0.89378 0.93491 0.93741 0.92835 0.98087 0.98456 0.92404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.01 37.16 0.33 -1.22 16 2 C -0.05 -0.57 3.09 -91.77 -0.28 -0.85 16 3 C -0.14 -1.53 9.00 37.16 0.33 -1.20 16 4 C -0.09 -1.25 4.78 -104.66 -0.50 -1.75 16 5 C -0.11 -1.78 8.71 -39.71 -0.35 -2.12 16 6 C -0.11 -2.02 6.90 -39.23 -0.27 -2.29 16 7 C 0.11 1.72 4.86 -83.85 -0.41 1.31 16 8 C -0.12 -1.70 5.74 -104.38 -0.60 -2.30 16 9 C -0.11 -1.48 9.26 -39.51 -0.37 -1.85 16 10 C -0.07 -0.78 5.81 -27.81 -0.16 -0.95 16 11 C -0.16 -1.59 6.03 -26.51 -0.16 -1.75 16 12 C 0.06 0.70 5.81 -3.88 -0.02 0.68 16 13 N -0.49 -7.63 4.58 -171.28 -0.78 -8.42 16 14 C 0.07 1.00 5.29 -3.82 -0.02 0.97 16 15 C 0.04 0.77 5.19 37.16 0.19 0.96 16 16 O -0.36 -8.28 8.58 -35.23 -0.30 -8.58 16 17 C 0.17 4.14 4.23 36.01 0.15 4.29 16 18 C -0.52 -15.22 9.99 -34.44 -0.34 -15.56 16 19 H 0.08 2.73 8.06 -52.49 -0.42 2.30 16 20 C 0.07 2.16 5.47 -17.82 -0.10 2.06 16 21 N -0.89 -27.59 13.96 55.43 0.77 -26.81 16 22 Si 0.87 21.34 27.47 -169.99 -4.67 16.67 16 23 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.71 7.41 -51.93 -0.38 0.32 16 29 H 0.07 0.70 7.87 -51.93 -0.41 0.29 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.69 7.38 -51.93 -0.38 0.31 16 33 H 0.12 1.88 7.12 -52.49 -0.37 1.51 16 34 H 0.16 3.36 4.16 -52.49 -0.22 3.15 16 35 H 0.11 1.21 7.93 -52.49 -0.42 0.79 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.69 6.41 -51.93 -0.33 0.36 16 40 H 0.08 0.98 8.11 -51.93 -0.42 0.56 16 41 H 0.08 0.89 8.05 -51.93 -0.42 0.47 16 42 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 43 H 0.05 0.60 6.44 -51.93 -0.33 0.27 16 44 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.05 0.96 5.10 -51.93 -0.27 0.70 16 46 H 0.00 0.04 7.20 -51.93 -0.37 -0.34 16 47 H 0.00 -0.05 7.17 -51.93 -0.37 -0.43 16 48 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 364.52 15.07 5.49 5.49 Total: -1.00 -31.60 364.52 -10.15 -41.75 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -8.10 Total: 1.47 kcal Atomic # 6 Polarization: -19.00 SS G_CDS: -2.56 Total: -21.57 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: -0.01 Total: -35.23 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: -0.30 Total: -8.58 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.67 Total: 16.67 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.60 -10.15 -41.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815064196.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.964 kcal (2) G-P(sol) polarization free energy of solvation -31.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds