Wall clock time and date at job start Tue Mar 31 2020 08:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47130 * 2 1 4 4 C 1.52998 * 109.47130 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47130 * 179.97438 * 4 3 2 6 6 C 1.52992 * 109.47444 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.47115 * 60.00042 * 6 5 4 8 8 C 1.53008 * 109.47176 * 300.00253 * 6 5 4 9 9 C 1.50697 * 109.47651 * 180.02562 * 6 5 4 10 10 O 1.21294 * 119.99771 * 359.97438 * 9 6 5 11 11 N 1.34778 * 120.00458 * 180.02562 * 9 6 5 12 12 C 1.39938 * 120.00022 * 174.39778 * 11 9 6 13 13 C 1.39291 * 119.94374 * 145.35358 * 12 11 9 14 14 C 1.38489 * 120.42921 * 179.97438 * 13 12 11 15 15 C 1.37686 * 120.31908 * 0.27655 * 14 13 12 16 16 C 1.40742 * 119.88543 * 359.46262 * 15 14 13 17 17 C 1.41404 * 120.21222 * 180.27378 * 16 15 14 18 18 H 1.07994 * 120.00363 * 214.58550 * 17 16 15 19 19 C 1.39940 * 119.99942 * 34.58002 * 17 16 15 20 20 N 1.30826 * 120.00113 * 5.45576 * 19 17 16 21 21 Si 1.86805 * 119.99817 * 185.45679 * 19 17 16 22 22 H 1.48506 * 109.46984 * 60.00005 * 21 19 17 23 23 H 1.48498 * 109.46676 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47007 * 300.00002 * 21 19 17 25 25 C 1.38240 * 119.94929 * 325.33606 * 12 11 9 26 26 H 1.08995 * 109.46980 * 299.99838 * 1 2 3 27 27 H 1.08997 * 109.47495 * 60.00100 * 1 2 3 28 28 H 1.09007 * 109.47185 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46880 * 240.00393 * 2 1 3 30 30 H 1.08997 * 109.47039 * 120.00173 * 2 1 3 31 31 H 1.09004 * 109.46918 * 60.00416 * 3 2 1 32 32 H 1.08997 * 109.47301 * 300.00013 * 3 2 1 33 33 H 1.08995 * 109.47451 * 60.00407 * 4 3 2 34 34 H 1.08997 * 109.47495 * 299.99900 * 4 3 2 35 35 H 1.09008 * 109.47175 * 60.00002 * 5 4 3 36 36 H 1.09003 * 109.47516 * 300.00349 * 5 4 3 37 37 H 1.09003 * 109.47447 * 180.02562 * 7 6 5 38 38 H 1.08999 * 109.47313 * 300.00178 * 7 6 5 39 39 H 1.08997 * 109.47105 * 60.00364 * 7 6 5 40 40 H 1.08995 * 109.47046 * 299.99675 * 8 6 5 41 41 H 1.08999 * 109.47026 * 59.99960 * 8 6 5 42 42 H 1.08998 * 109.46898 * 179.97438 * 8 6 5 43 43 H 0.96995 * 120.00055 * 354.40499 * 11 9 6 44 44 H 1.07997 * 119.78710 * 0.02562 * 13 12 11 45 45 H 1.08003 * 119.84115 * 180.02562 * 14 13 12 46 46 H 1.07996 * 120.05500 * 179.69413 * 15 14 13 47 47 H 0.97000 * 120.00088 * 180.02562 * 20 19 17 48 48 H 1.07996 * 120.16302 * 0.02562 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 6 5.6099 2.8851 0.0000 7 6 6.1199 2.1633 -1.2489 8 6 6.1200 2.1643 1.2496 9 6 6.1123 4.3058 0.0000 10 8 5.3240 5.2278 -0.0005 11 7 7.4373 4.5522 -0.0005 12 6 7.9048 5.8659 -0.1188 13 6 9.0608 6.2557 0.5533 14 6 9.5326 7.5530 0.4429 15 6 8.8601 8.4739 -0.3287 16 6 7.6938 8.0930 -1.0181 17 6 7.0009 9.0315 -1.8172 18 1 5.9239 8.9915 -1.8860 19 6 7.7108 10.0124 -2.5188 20 7 9.0190 9.9967 -2.5218 21 14 6.7905 11.3443 -3.4509 22 1 5.9482 12.1189 -2.5044 23 1 7.7650 12.2543 -4.1045 24 1 5.9268 10.7185 -4.4841 25 6 7.2187 6.7745 -0.9028 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.6767 1.9563 -0.8899 33 1 3.9337 0.9286 -0.8891 34 1 3.9330 0.9288 0.8908 35 1 3.7162 3.3994 0.8896 36 1 3.7170 3.3984 -0.8904 37 1 7.2099 2.1629 -1.2487 38 1 5.7566 1.1356 -1.2485 39 1 5.7566 2.6767 -2.1391 40 1 5.7567 2.6785 2.1393 41 1 5.7567 1.1366 1.2500 42 1 7.2099 2.1640 1.2493 43 1 8.0670 3.8189 0.0810 44 1 9.5931 5.5414 1.1639 45 1 10.4302 7.8449 0.9679 46 1 9.2292 9.4858 -0.4079 47 1 9.5111 10.6768 -3.0078 48 1 6.3222 6.4733 -1.4243 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837071237.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:26 Heat of formation + Delta-G solvation = -72.997940 kcal Electronic energy + Delta-G solvation = -24542.057746 eV Core-core repulsion = 21173.343312 eV Total energy + Delta-G solvation = -3368.714435 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.63886 -39.36133 -37.87667 -36.19916 -35.80093 -34.75739 -31.76440 -31.72425 -29.80528 -28.27435 -27.29097 -27.21131 -25.11410 -23.35541 -22.77658 -21.98528 -21.55339 -19.94715 -19.43435 -17.83215 -17.37451 -16.97106 -16.70012 -16.50757 -16.12807 -15.76116 -15.21526 -15.05266 -14.82981 -14.70411 -14.25882 -14.08491 -13.87146 -13.74819 -13.56674 -13.41324 -13.04449 -12.96780 -12.90108 -12.84531 -12.63243 -12.46592 -12.20895 -12.10341 -12.04897 -11.95397 -11.66231 -11.57643 -11.48496 -11.33409 -11.23630 -11.18157 -10.85671 -10.48574 -9.34463 -8.75960 -8.54448 -6.42388 0.84632 0.97233 1.34321 1.46108 1.46636 1.81353 2.20245 2.24216 2.76999 3.56849 3.63594 3.70114 3.87489 4.07099 4.12103 4.21214 4.35070 4.43076 4.44297 4.58034 4.60652 4.72389 4.74748 4.79902 4.80922 4.93172 4.96503 5.00930 5.02068 5.05915 5.11051 5.13759 5.14211 5.15356 5.18667 5.24069 5.31445 5.34735 5.36041 5.44159 5.53488 5.57620 5.76136 5.82699 6.03207 6.10095 6.34073 6.63972 6.67158 6.92873 6.98559 7.33699 8.39882 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.017252 B = 0.003016 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.615406 B = 9281.234029 C =10541.606790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.120 4.120 3 C -0.123 4.123 4 C -0.111 4.111 5 C -0.093 4.093 6 C -0.069 4.069 7 C -0.140 4.140 8 C -0.140 4.140 9 C 0.506 3.494 10 O -0.572 6.572 11 N -0.656 5.656 12 C 0.153 3.847 13 C -0.239 4.239 14 C -0.095 4.095 15 C -0.183 4.183 16 C 0.088 3.912 17 C -0.509 4.509 18 H 0.059 0.941 19 C 0.034 3.966 20 N -0.837 5.837 21 Si 0.984 3.016 22 H -0.262 1.262 23 H -0.260 1.260 24 H -0.265 1.265 25 C -0.227 4.227 26 H 0.050 0.950 27 H 0.048 0.952 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.048 0.952 36 H 0.042 0.958 37 H 0.071 0.929 38 H 0.102 0.898 39 H 0.041 0.959 40 H 0.050 0.950 41 H 0.101 0.899 42 H 0.073 0.927 43 H 0.419 0.581 44 H 0.135 0.865 45 H 0.126 0.874 46 H 0.102 0.898 47 H 0.287 0.713 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.029 -20.689 4.620 22.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.158 4.158 3 C -0.161 4.161 4 C -0.148 4.148 5 C -0.131 4.131 6 C -0.073 4.073 7 C -0.198 4.198 8 C -0.197 4.197 9 C 0.295 3.705 10 O -0.450 6.450 11 N -0.302 5.302 12 C 0.059 3.941 13 C -0.260 4.260 14 C -0.114 4.114 15 C -0.203 4.203 16 C 0.085 3.915 17 C -0.540 4.540 18 H 0.078 0.922 19 C -0.179 4.179 20 N -0.465 5.465 21 Si 0.804 3.196 22 H -0.187 1.187 23 H -0.184 1.184 24 H -0.190 1.190 25 C -0.249 4.249 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.090 0.910 38 H 0.121 0.879 39 H 0.060 0.940 40 H 0.069 0.931 41 H 0.119 0.881 42 H 0.092 0.908 43 H 0.257 0.743 44 H 0.153 0.847 45 H 0.144 0.856 46 H 0.120 0.880 47 H 0.097 0.903 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.401 -19.972 4.512 21.452 hybrid contribution -0.181 1.045 -0.599 1.218 sum -6.582 -18.927 3.913 20.417 Atomic orbital electron populations 1.21805 0.96064 1.01921 1.01553 1.21506 0.95770 0.95958 1.02548 1.21629 0.95611 0.97441 1.01404 1.21695 0.95150 0.94345 1.03612 1.21390 0.91991 0.98414 1.01351 1.20832 0.97321 0.88932 1.00172 1.21957 1.01962 1.01640 0.94205 1.21964 1.02046 1.01659 0.93999 1.21717 0.81660 0.92873 0.74266 1.90724 1.56345 1.48323 1.49605 1.43411 1.07712 1.06905 1.72170 1.17574 0.95393 0.84710 0.96392 1.20562 1.00200 0.97506 1.07742 1.20887 0.98984 0.93249 0.98242 1.21305 0.99173 0.99417 1.00419 1.17845 0.92482 0.91233 0.89932 1.19636 0.94336 1.13037 1.26978 0.92232 1.26651 0.95741 0.99178 0.96316 1.69816 1.08146 1.32734 1.35754 0.85244 0.78713 0.77214 0.78397 1.18681 1.18437 1.18962 1.21019 1.03354 0.94263 1.06228 0.93045 0.93236 0.91966 0.91498 0.91247 0.92798 0.93141 0.90300 0.89854 0.93266 0.93893 0.91012 0.87919 0.93951 0.93121 0.88078 0.90771 0.74282 0.84718 0.85608 0.88033 0.90288 0.90103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 9.91 71.98 0.71 -1.28 16 2 C -0.12 -1.54 5.93 30.59 0.18 -1.36 16 3 C -0.12 -2.03 5.21 30.59 0.16 -1.87 16 4 C -0.11 -1.75 4.51 30.59 0.14 -1.61 16 5 C -0.09 -2.27 3.56 30.59 0.11 -2.16 16 6 C -0.07 -1.62 0.65 -52.93 -0.03 -1.66 16 7 C -0.14 -2.62 8.02 71.98 0.58 -2.05 16 8 C -0.14 -2.30 8.01 71.98 0.58 -1.72 16 9 C 0.51 18.22 6.20 87.66 0.54 18.76 16 10 O -0.57 -27.31 13.77 -3.07 -0.04 -27.35 16 11 N -0.66 -22.92 5.11 -303.64 -1.55 -24.47 16 12 C 0.15 6.98 6.25 38.10 0.24 7.22 16 13 C -0.24 -10.09 9.97 22.58 0.23 -9.87 16 14 C -0.09 -4.37 10.02 22.20 0.22 -4.15 16 15 C -0.18 -10.06 8.62 22.75 0.20 -9.86 16 16 C 0.09 5.18 5.50 -21.31 -0.12 5.06 16 17 C -0.51 -30.44 9.04 23.46 0.21 -30.22 16 18 H 0.06 3.58 7.85 -2.91 -0.02 3.56 16 19 C 0.03 1.84 5.31 85.25 0.45 2.29 16 20 N -0.84 -46.09 10.98 21.83 0.24 -45.85 16 21 Si 0.98 41.56 29.56 68.60 2.03 43.59 16 22 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 23 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 24 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 25 C -0.23 -12.59 8.39 22.85 0.19 -12.40 16 26 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.06 0.66 8.14 -2.38 -0.02 0.65 16 29 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.08 1.05 6.43 -2.39 -0.02 1.04 16 34 H 0.08 1.03 6.43 -2.39 -0.02 1.02 16 35 H 0.05 1.37 8.10 -2.38 -0.02 1.35 16 36 H 0.04 1.26 8.10 -2.39 -0.02 1.24 16 37 H 0.07 1.18 7.70 -2.39 -0.02 1.16 16 38 H 0.10 1.26 6.43 -2.39 -0.02 1.24 16 39 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.10 1.07 6.43 -2.39 -0.02 1.06 16 42 H 0.07 1.02 7.45 -2.39 -0.02 1.00 16 43 H 0.42 10.66 7.69 -92.71 -0.71 9.94 16 44 H 0.14 4.47 8.06 -2.91 -0.02 4.45 16 45 H 0.13 4.88 8.06 -2.91 -0.02 4.86 16 46 H 0.10 5.79 6.49 -2.91 -0.02 5.77 16 47 H 0.29 14.25 8.30 -92.71 -0.77 13.48 16 48 H 0.08 4.77 6.51 -2.91 -0.02 4.75 16 Total: -1.00 -73.18 379.14 5.48 -67.70 By element: Atomic # 1 Polarization: 33.04 SS G_CDS: 0.22 Total: 33.26 kcal Atomic # 6 Polarization: -51.45 SS G_CDS: 4.59 Total: -46.87 kcal Atomic # 7 Polarization: -69.01 SS G_CDS: -1.31 Total: -70.33 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -0.04 Total: -27.35 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Total: -73.18 5.48 -67.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837071237.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.301 kcal (2) G-P(sol) polarization free energy of solvation -73.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds