Wall clock time and date at job start Tue Mar 31 2020 08:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46501 * 120.00443 * 2 1 4 4 C 1.53000 * 109.47087 * 270.00601 * 3 2 1 5 5 C 1.53006 * 109.46926 * 179.97438 * 4 3 2 6 6 C 1.53006 * 109.46964 * 59.99684 * 5 4 3 7 7 C 1.52991 * 109.47069 * 179.97438 * 5 4 3 8 8 C 1.52995 * 109.46828 * 300.00129 * 5 4 3 9 9 C 1.34784 * 119.99589 * 180.02562 * 2 1 3 10 10 O 1.21280 * 119.99871 * 179.97438 * 9 2 1 11 11 C 1.50701 * 119.99906 * 359.97438 * 9 2 1 12 12 C 1.50700 * 109.46813 * 180.02562 * 11 9 2 13 13 C 1.37640 * 120.13180 * 265.30632 * 12 11 9 14 14 C 1.38613 * 120.24862 * 180.32332 * 13 12 11 15 15 C 1.38655 * 120.50174 * 359.67182 * 14 13 12 16 16 C 1.37598 * 120.24576 * 359.97438 * 15 14 13 17 17 C 1.40702 * 120.12495 * 85.00356 * 12 11 9 18 18 C 1.41393 * 120.24620 * 359.97406 * 17 12 11 19 19 H 1.07999 * 119.99787 * 29.07372 * 18 17 12 20 20 C 1.39938 * 120.00244 * 209.07592 * 18 17 12 21 21 N 1.30823 * 120.00241 * 197.10039 * 20 18 17 22 22 Si 1.86803 * 119.99882 * 17.09514 * 20 18 17 23 23 H 1.48495 * 109.47432 * 270.00073 * 22 20 18 24 24 H 1.48498 * 109.46929 * 30.00589 * 22 20 18 25 25 H 1.48504 * 109.46998 * 150.00206 * 22 20 18 26 26 H 1.09005 * 109.46741 * 270.00052 * 1 2 3 27 27 H 1.09001 * 109.47242 * 29.99066 * 1 2 3 28 28 H 1.08995 * 109.47992 * 149.99628 * 1 2 3 29 29 H 1.08995 * 109.46783 * 30.00742 * 3 2 1 30 30 H 1.09000 * 109.46921 * 150.00704 * 3 2 1 31 31 H 1.09004 * 109.47253 * 299.99623 * 4 3 2 32 32 H 1.08994 * 109.47275 * 59.99839 * 4 3 2 33 33 H 1.08995 * 109.46953 * 60.00462 * 6 5 4 34 34 H 1.09000 * 109.46590 * 180.02562 * 6 5 4 35 35 H 1.08994 * 109.47005 * 300.00172 * 6 5 4 36 36 H 1.09000 * 109.47568 * 59.99719 * 7 5 4 37 37 H 1.08997 * 109.47274 * 180.02562 * 7 5 4 38 38 H 1.09004 * 109.47219 * 299.99744 * 7 5 4 39 39 H 1.08999 * 109.47706 * 60.00293 * 8 5 4 40 40 H 1.09000 * 109.47256 * 179.97438 * 8 5 4 41 41 H 1.09000 * 109.47392 * 299.99784 * 8 5 4 42 42 H 1.08999 * 109.47299 * 60.00523 * 11 9 2 43 43 H 1.08998 * 109.47401 * 299.99992 * 11 9 2 44 44 H 1.08005 * 119.87130 * 0.02562 * 13 12 11 45 45 H 1.08001 * 119.74473 * 179.69460 * 14 13 12 46 46 H 1.08002 * 119.87493 * 180.02562 * 15 14 13 47 47 H 1.08003 * 120.12022 * 180.02562 * 16 15 14 48 48 H 0.97004 * 119.99819 * 355.45620 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2171 3.0357 -1.4425 6 6 4.5540 2.8532 -0.7210 7 6 3.4725 3.4771 -2.8849 8 6 2.3898 4.1016 -0.7212 9 6 2.1388 -1.1673 -0.0005 10 8 3.3516 -1.1674 -0.0010 11 6 1.3852 -2.4724 -0.0005 12 6 2.3645 -3.6178 -0.0005 13 6 2.7394 -4.2063 -1.1869 14 6 3.6348 -5.2644 -1.1892 15 6 4.1679 -5.7378 0.0000 16 6 3.8129 -5.1600 1.1973 17 6 2.9039 -4.0857 1.2118 18 6 2.5314 -3.4845 2.4362 19 1 1.5566 -3.0316 2.5408 20 6 3.4259 -3.4762 3.5123 21 7 2.9912 -3.2352 4.7224 22 14 5.2408 -3.8095 3.2209 23 1 5.5014 -5.2667 3.3373 24 1 5.6169 -3.3463 1.8611 25 1 6.0467 -3.0801 4.2328 26 1 -0.3633 0.0000 1.0277 27 1 -0.3634 0.8901 -0.5137 28 1 -0.3635 -0.8899 -0.5138 29 1 1.6086 2.0283 0.5139 30 1 3.1500 1.1382 0.5137 31 1 3.0415 0.9507 -1.9564 32 1 1.5001 1.8408 -1.9562 33 1 5.1433 2.0938 -1.2348 34 1 5.0984 3.7975 -0.7206 35 1 4.3723 2.5385 0.3065 36 1 2.5203 3.6070 -3.3992 37 1 4.0176 4.4210 -2.8849 38 1 4.0621 2.7176 -3.3983 39 1 2.2082 3.7870 0.3064 40 1 2.9346 5.0457 -0.7208 41 1 1.4373 4.2317 -1.2351 42 1 0.7583 -2.5299 -0.8903 43 1 0.7589 -2.5303 0.8897 44 1 2.3307 -3.8453 -2.1192 45 1 3.9196 -5.7234 -2.1245 46 1 4.8651 -6.5625 -0.0136 47 1 4.2297 -5.5300 2.1223 48 1 2.0617 -2.9974 4.8655 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843684062.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:55:49 Heat of formation + Delta-G solvation = -41.933754 kcal Electronic energy + Delta-G solvation = -25638.866096 eV Core-core repulsion = 22271.498705 eV Total energy + Delta-G solvation = -3367.367391 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.61371 -38.09461 -37.33477 -34.89094 -33.61312 -31.95813 -30.12010 -29.76730 -27.41727 -27.31005 -26.92634 -26.21442 -24.54838 -23.14092 -21.31220 -19.91763 -18.72110 -18.47788 -18.01052 -16.52720 -16.03162 -15.42632 -15.21900 -14.67394 -14.52691 -14.15377 -14.07632 -13.75359 -13.57441 -13.47698 -12.85638 -12.71000 -12.57029 -12.41433 -12.25302 -12.04440 -11.93744 -11.89115 -11.79791 -11.73731 -11.21845 -11.18660 -11.03750 -10.76942 -10.68806 -10.63611 -10.43678 -10.23749 -10.09283 -9.65302 -9.21403 -9.08112 -8.91357 -8.25925 -7.60646 -7.53190 -7.13035 -4.44475 2.63942 2.80312 3.29724 3.36973 3.43181 3.50330 3.70989 4.14189 4.65199 4.72960 4.74254 4.76635 5.05486 5.22443 5.35189 5.37014 5.45406 5.50832 5.55417 5.62769 5.65276 5.67243 5.69172 5.78315 5.81755 5.85607 5.87713 5.94766 6.00405 6.04818 6.12029 6.14830 6.22606 6.25348 6.27601 6.38861 6.42177 6.59246 6.79782 6.92205 7.11676 7.40893 7.56553 7.72126 7.76026 7.86253 7.90993 8.06945 8.45931 8.65778 8.86421 8.89273 10.12623 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.014687 B = 0.004452 C = 0.004166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.987355 B = 6287.235624 C = 6718.735208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.632 5.632 3 C 0.113 3.887 4 C -0.121 4.121 5 C -0.067 4.067 6 C -0.145 4.145 7 C -0.139 4.139 8 C -0.143 4.143 9 C 0.520 3.480 10 O -0.514 6.514 11 C -0.069 4.069 12 C -0.170 4.170 13 C -0.068 4.068 14 C -0.245 4.245 15 C -0.076 4.076 16 C -0.245 4.245 17 C 0.116 3.884 18 C -0.512 4.512 19 H 0.074 0.926 20 C 0.048 3.952 21 N -0.824 5.824 22 Si 1.070 2.930 23 H -0.279 1.279 24 H -0.258 1.258 25 H -0.293 1.293 26 H 0.052 0.948 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.051 0.949 35 H 0.060 0.940 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.054 0.946 39 H 0.058 0.942 40 H 0.053 0.947 41 H 0.052 0.948 42 H 0.075 0.925 43 H 0.091 0.909 44 H 0.089 0.911 45 H 0.091 0.909 46 H 0.093 0.907 47 H 0.104 0.896 48 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.385 11.639 -9.949 15.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.368 5.368 3 C -0.009 4.009 4 C -0.160 4.160 5 C -0.068 4.068 6 C -0.202 4.202 7 C -0.197 4.197 8 C -0.201 4.201 9 C 0.308 3.692 10 O -0.388 6.388 11 C -0.109 4.109 12 C -0.172 4.172 13 C -0.087 4.087 14 C -0.264 4.264 15 C -0.095 4.095 16 C -0.264 4.264 17 C 0.113 3.887 18 C -0.541 4.541 19 H 0.092 0.908 20 C -0.171 4.171 21 N -0.447 5.447 22 Si 0.897 3.103 23 H -0.207 1.207 24 H -0.182 1.182 25 H -0.221 1.221 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.093 0.907 43 H 0.109 0.891 44 H 0.107 0.893 45 H 0.109 0.891 46 H 0.111 0.889 47 H 0.122 0.878 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.344 11.486 -9.075 14.825 hybrid contribution -1.791 0.253 -0.690 1.936 sum -4.135 11.739 -9.764 15.819 Atomic orbital electron populations 1.21693 0.80356 1.02518 1.01512 1.47983 1.06457 1.06087 1.76255 1.21529 0.98097 0.84721 0.96573 1.21982 0.99944 0.96370 0.97716 1.20500 0.95769 0.94890 0.95618 1.21936 0.96074 1.01321 1.00876 1.21853 1.01293 1.00979 0.95544 1.21940 0.99497 0.98157 1.00473 1.20996 0.88403 0.84817 0.74940 1.90668 1.14029 1.86896 1.47172 1.20296 0.97576 0.90696 1.02302 1.19056 1.05659 0.99283 0.93208 1.20411 0.96958 0.95736 0.95574 1.20317 1.06405 1.03365 0.96346 1.20598 0.97789 0.97974 0.93108 1.21121 1.07476 1.01040 0.96751 1.17501 0.89342 0.89536 0.92359 1.20512 1.02452 1.34477 0.96667 0.90828 1.27137 1.07420 0.91300 0.91229 1.70573 1.20092 1.32093 1.21955 0.83652 0.72735 0.76703 0.77238 1.20658 1.18206 1.22079 0.92986 0.91784 0.91082 0.91190 0.89681 0.91414 0.92283 0.92336 0.93019 0.92135 0.92916 0.92811 0.92642 0.92327 0.92839 0.92844 0.90683 0.89076 0.89297 0.89052 0.88910 0.87816 0.90655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.97 10.24 59.85 0.61 1.58 16 2 N -0.63 -10.04 2.87 -181.57 -0.52 -10.56 16 3 C 0.11 1.61 4.70 -4.04 -0.02 1.59 16 4 C -0.12 -1.51 4.59 -26.73 -0.12 -1.63 16 5 C -0.07 -0.71 0.80 -154.51 -0.12 -0.83 16 6 C -0.14 -1.68 8.12 37.16 0.30 -1.38 16 7 C -0.14 -1.32 8.47 37.15 0.31 -1.00 16 8 C -0.14 -1.30 8.12 37.16 0.30 -1.00 16 9 C 0.52 10.60 7.67 -10.98 -0.08 10.52 16 10 O -0.51 -12.73 15.61 5.56 0.09 -12.64 16 11 C -0.07 -1.37 3.91 -29.03 -0.11 -1.48 16 12 C -0.17 -4.03 4.43 -103.91 -0.46 -4.49 16 13 C -0.07 -1.52 9.66 -39.66 -0.38 -1.90 16 14 C -0.25 -5.39 10.05 -39.29 -0.39 -5.79 16 15 C -0.08 -1.75 10.02 -39.66 -0.40 -2.15 16 16 C -0.24 -6.22 7.26 -38.87 -0.28 -6.50 16 17 C 0.12 3.03 5.13 -106.83 -0.55 2.48 16 18 C -0.51 -13.96 8.80 -37.75 -0.33 -14.29 16 19 H 0.07 2.01 6.60 -52.49 -0.35 1.67 16 20 C 0.05 1.31 5.42 -17.34 -0.09 1.21 16 21 N -0.82 -22.83 13.65 55.55 0.76 -22.07 16 22 Si 1.07 26.47 24.89 -169.99 -4.23 22.23 16 23 H -0.28 -6.48 6.45 56.52 0.36 -6.12 16 24 H -0.26 -6.66 7.01 56.52 0.40 -6.26 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.58 8.07 -51.93 -0.42 0.16 16 28 H 0.07 0.77 6.44 -51.93 -0.33 0.43 16 29 H 0.07 0.83 6.36 -51.93 -0.33 0.50 16 30 H 0.08 1.43 5.71 -51.93 -0.30 1.14 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.76 6.43 -51.93 -0.33 0.42 16 36 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.54 6.43 -51.93 -0.33 0.21 16 40 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 1.23 7.31 -51.93 -0.38 0.85 16 43 H 0.09 1.81 6.48 -51.93 -0.34 1.47 16 44 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 45 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 46 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 47 H 0.10 2.62 4.43 -52.48 -0.23 2.39 16 48 H 0.28 7.55 8.73 -40.82 -0.36 7.20 16 LS Contribution 373.59 15.07 5.63 5.63 Total: -1.00 -31.20 373.59 -8.14 -39.33 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -8.03 Total: 3.14 kcal Atomic # 6 Polarization: -23.24 SS G_CDS: -1.82 Total: -25.07 kcal Atomic # 7 Polarization: -32.86 SS G_CDS: 0.24 Total: -32.63 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.09 Total: -12.64 kcal Atomic # 14 Polarization: 26.47 SS G_CDS: -4.23 Total: 22.23 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.20 -8.14 -39.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843684062.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.600 kcal (2) G-P(sol) polarization free energy of solvation -31.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds