Wall clock time and date at job start Tue Mar 31 2020 08:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46501 * 120.00443 * 2 1 4 4 C 1.53000 * 109.47087 * 270.00601 * 3 2 1 5 5 C 1.53006 * 109.46926 * 179.97438 * 4 3 2 6 6 C 1.53006 * 109.46964 * 59.99684 * 5 4 3 7 7 C 1.52991 * 109.47069 * 179.97438 * 5 4 3 8 8 C 1.52995 * 109.46828 * 300.00129 * 5 4 3 9 9 C 1.34784 * 119.99589 * 180.02562 * 2 1 3 10 10 O 1.21280 * 119.99871 * 179.97438 * 9 2 1 11 11 C 1.50701 * 119.99906 * 359.97438 * 9 2 1 12 12 C 1.50700 * 109.46813 * 180.02562 * 11 9 2 13 13 C 1.37640 * 120.13180 * 265.30632 * 12 11 9 14 14 C 1.38613 * 120.24862 * 180.32332 * 13 12 11 15 15 C 1.38655 * 120.50174 * 359.67182 * 14 13 12 16 16 C 1.37598 * 120.24576 * 359.97438 * 15 14 13 17 17 C 1.40702 * 120.12495 * 85.00356 * 12 11 9 18 18 C 1.41393 * 120.24620 * 359.97406 * 17 12 11 19 19 H 1.07999 * 119.99787 * 29.07372 * 18 17 12 20 20 C 1.39938 * 120.00244 * 209.07592 * 18 17 12 21 21 N 1.30823 * 120.00241 * 197.10039 * 20 18 17 22 22 Si 1.86803 * 119.99882 * 17.09514 * 20 18 17 23 23 H 1.48495 * 109.47432 * 270.00073 * 22 20 18 24 24 H 1.48498 * 109.46929 * 30.00589 * 22 20 18 25 25 H 1.48504 * 109.46998 * 150.00206 * 22 20 18 26 26 H 1.09005 * 109.46741 * 270.00052 * 1 2 3 27 27 H 1.09001 * 109.47242 * 29.99066 * 1 2 3 28 28 H 1.08995 * 109.47992 * 149.99628 * 1 2 3 29 29 H 1.08995 * 109.46783 * 30.00742 * 3 2 1 30 30 H 1.09000 * 109.46921 * 150.00704 * 3 2 1 31 31 H 1.09004 * 109.47253 * 299.99623 * 4 3 2 32 32 H 1.08994 * 109.47275 * 59.99839 * 4 3 2 33 33 H 1.08995 * 109.46953 * 60.00462 * 6 5 4 34 34 H 1.09000 * 109.46590 * 180.02562 * 6 5 4 35 35 H 1.08994 * 109.47005 * 300.00172 * 6 5 4 36 36 H 1.09000 * 109.47568 * 59.99719 * 7 5 4 37 37 H 1.08997 * 109.47274 * 180.02562 * 7 5 4 38 38 H 1.09004 * 109.47219 * 299.99744 * 7 5 4 39 39 H 1.08999 * 109.47706 * 60.00293 * 8 5 4 40 40 H 1.09000 * 109.47256 * 179.97438 * 8 5 4 41 41 H 1.09000 * 109.47392 * 299.99784 * 8 5 4 42 42 H 1.08999 * 109.47299 * 60.00523 * 11 9 2 43 43 H 1.08998 * 109.47401 * 299.99992 * 11 9 2 44 44 H 1.08005 * 119.87130 * 0.02562 * 13 12 11 45 45 H 1.08001 * 119.74473 * 179.69460 * 14 13 12 46 46 H 1.08002 * 119.87493 * 180.02562 * 15 14 13 47 47 H 1.08003 * 120.12022 * 180.02562 * 16 15 14 48 48 H 0.97004 * 119.99819 * 355.45620 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2171 3.0357 -1.4425 6 6 4.5540 2.8532 -0.7210 7 6 3.4725 3.4771 -2.8849 8 6 2.3898 4.1016 -0.7212 9 6 2.1388 -1.1673 -0.0005 10 8 3.3516 -1.1674 -0.0010 11 6 1.3852 -2.4724 -0.0005 12 6 2.3645 -3.6178 -0.0005 13 6 2.7394 -4.2063 -1.1869 14 6 3.6348 -5.2644 -1.1892 15 6 4.1679 -5.7378 0.0000 16 6 3.8129 -5.1600 1.1973 17 6 2.9039 -4.0857 1.2118 18 6 2.5314 -3.4845 2.4362 19 1 1.5566 -3.0316 2.5408 20 6 3.4259 -3.4762 3.5123 21 7 2.9912 -3.2352 4.7224 22 14 5.2408 -3.8095 3.2209 23 1 5.5014 -5.2667 3.3373 24 1 5.6169 -3.3463 1.8611 25 1 6.0467 -3.0801 4.2328 26 1 -0.3633 0.0000 1.0277 27 1 -0.3634 0.8901 -0.5137 28 1 -0.3635 -0.8899 -0.5138 29 1 1.6086 2.0283 0.5139 30 1 3.1500 1.1382 0.5137 31 1 3.0415 0.9507 -1.9564 32 1 1.5001 1.8408 -1.9562 33 1 5.1433 2.0938 -1.2348 34 1 5.0984 3.7975 -0.7206 35 1 4.3723 2.5385 0.3065 36 1 2.5203 3.6070 -3.3992 37 1 4.0176 4.4210 -2.8849 38 1 4.0621 2.7176 -3.3983 39 1 2.2082 3.7870 0.3064 40 1 2.9346 5.0457 -0.7208 41 1 1.4373 4.2317 -1.2351 42 1 0.7583 -2.5299 -0.8903 43 1 0.7589 -2.5303 0.8897 44 1 2.3307 -3.8453 -2.1192 45 1 3.9196 -5.7234 -2.1245 46 1 4.8651 -6.5625 -0.0136 47 1 4.2297 -5.5300 2.1223 48 1 2.0617 -2.9974 4.8655 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843684062.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:55:48 Heat of formation + Delta-G solvation = -58.844285 kcal Electronic energy + Delta-G solvation = -25639.599391 eV Core-core repulsion = 22271.498705 eV Total energy + Delta-G solvation = -3368.100686 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.08048 -39.58631 -38.65165 -36.25032 -35.60252 -33.62787 -32.01907 -30.95059 -28.52895 -28.19737 -28.14583 -27.35479 -26.41673 -24.39970 -23.17726 -21.62881 -20.16678 -19.86109 -19.55098 -17.98503 -17.44301 -16.94237 -16.78259 -16.14350 -15.79777 -15.61469 -15.55433 -15.22047 -14.80721 -14.60400 -14.43437 -14.03059 -14.01546 -13.85741 -13.64680 -13.46643 -13.22954 -13.03388 -12.89469 -12.74836 -12.70179 -12.59727 -12.56300 -12.16890 -12.00950 -11.92322 -11.64547 -11.59690 -11.52428 -11.41369 -11.14084 -10.86788 -10.69230 -9.57082 -9.54737 -9.34536 -9.15457 -6.48853 0.81066 0.89847 1.29577 1.49994 1.71389 1.81440 2.14395 2.18441 2.69644 3.47842 3.80386 3.83401 3.90002 3.97017 4.13263 4.20600 4.30907 4.36595 4.40443 4.46185 4.51937 4.56203 4.62400 4.64531 4.71516 4.75595 4.82550 4.85861 4.90092 4.92929 4.97151 5.00148 5.04293 5.08254 5.11854 5.19671 5.24530 5.36968 5.47378 5.50279 5.52429 5.60664 5.71308 5.82993 5.89116 6.02283 6.18538 6.44876 6.50246 6.73767 6.88301 7.38226 8.06506 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.014687 B = 0.004452 C = 0.004166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.987355 B = 6287.235624 C = 6718.735208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.625 5.625 3 C 0.111 3.889 4 C -0.110 4.110 5 C -0.065 4.065 6 C -0.145 4.145 7 C -0.136 4.136 8 C -0.140 4.140 9 C 0.514 3.486 10 O -0.572 6.572 11 C -0.067 4.067 12 C -0.176 4.176 13 C -0.080 4.080 14 C -0.231 4.231 15 C -0.088 4.088 16 C -0.266 4.266 17 C 0.086 3.914 18 C -0.532 4.532 19 H 0.057 0.943 20 C 0.015 3.985 21 N -0.853 5.853 22 Si 1.097 2.903 23 H -0.256 1.256 24 H -0.280 1.280 25 H -0.286 1.286 26 H 0.054 0.946 27 H 0.099 0.901 28 H 0.083 0.917 29 H 0.098 0.902 30 H 0.050 0.950 31 H 0.036 0.964 32 H 0.080 0.920 33 H 0.036 0.964 34 H 0.068 0.932 35 H 0.044 0.956 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.043 0.957 39 H 0.053 0.947 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.115 0.885 43 H 0.086 0.914 44 H 0.123 0.877 45 H 0.129 0.871 46 H 0.125 0.875 47 H 0.098 0.902 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.495 12.417 -12.734 18.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.359 5.359 3 C -0.011 4.011 4 C -0.149 4.149 5 C -0.066 4.066 6 C -0.202 4.202 7 C -0.194 4.194 8 C -0.197 4.197 9 C 0.303 3.697 10 O -0.450 6.450 11 C -0.107 4.107 12 C -0.177 4.177 13 C -0.098 4.098 14 C -0.249 4.249 15 C -0.106 4.106 16 C -0.285 4.285 17 C 0.083 3.917 18 C -0.563 4.563 19 H 0.076 0.924 20 C -0.198 4.198 21 N -0.478 5.478 22 Si 0.921 3.079 23 H -0.182 1.182 24 H -0.206 1.206 25 H -0.213 1.213 26 H 0.073 0.927 27 H 0.118 0.882 28 H 0.101 0.899 29 H 0.116 0.884 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.098 0.902 33 H 0.056 0.944 34 H 0.087 0.913 35 H 0.063 0.937 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.062 0.938 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.133 0.867 43 H 0.104 0.896 44 H 0.141 0.859 45 H 0.147 0.853 46 H 0.143 0.857 47 H 0.116 0.884 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.507 12.274 -11.858 17.423 hybrid contribution -1.502 0.002 -0.075 1.504 sum -5.009 12.277 -11.933 17.838 Atomic orbital electron populations 1.22020 0.77396 1.04929 1.02491 1.48048 1.08366 1.05348 1.74166 1.21656 0.96949 0.84560 0.97952 1.21873 1.00633 0.96413 0.95944 1.20507 0.94932 0.94513 0.96644 1.21939 0.97063 1.01402 0.99826 1.21825 1.02011 1.01116 0.94417 1.21908 0.99978 0.97781 1.00030 1.21091 0.87792 0.86199 0.74614 1.90641 1.16294 1.87821 1.50267 1.20318 0.97041 0.89430 1.03885 1.19547 1.05340 0.99850 0.92976 1.20874 0.96926 0.95647 0.96378 1.20880 1.04383 1.02172 0.97504 1.21002 0.98321 0.98751 0.92551 1.21305 1.07895 1.01487 0.97813 1.17780 0.90575 0.90262 0.93037 1.20460 1.02110 1.35951 0.97755 0.92444 1.27816 1.09382 0.91321 0.91271 1.70610 1.19839 1.35109 1.22251 0.83269 0.70723 0.78000 0.75881 1.18162 1.20567 1.21336 0.92722 0.88238 0.89885 0.88358 0.93189 0.94555 0.90160 0.94442 0.91332 0.93738 0.91580 0.91592 0.93808 0.92794 0.91798 0.91306 0.86695 0.89618 0.85895 0.85334 0.85730 0.88439 0.91248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.52 10.24 127.77 1.31 2.83 16 2 N -0.63 -19.34 2.87 -846.75 -2.43 -21.77 16 3 C 0.11 3.11 4.70 86.38 0.41 3.51 16 4 C -0.11 -2.61 4.59 30.60 0.14 -2.47 16 5 C -0.07 -1.29 0.80 -52.18 -0.04 -1.33 16 6 C -0.14 -3.42 8.12 71.98 0.58 -2.83 16 7 C -0.14 -2.30 8.47 71.98 0.61 -1.69 16 8 C -0.14 -2.16 8.12 71.98 0.58 -1.57 16 9 C 0.51 21.10 7.67 87.66 0.67 21.77 16 10 O -0.57 -29.37 15.61 -3.03 -0.05 -29.41 16 11 C -0.07 -2.62 3.91 29.10 0.11 -2.50 16 12 C -0.18 -8.21 4.43 -19.40 -0.09 -8.29 16 13 C -0.08 -3.35 9.66 22.22 0.21 -3.13 16 14 C -0.23 -9.37 10.05 22.46 0.23 -9.15 16 15 C -0.09 -3.87 10.02 22.22 0.22 -3.64 16 16 C -0.27 -13.51 7.26 22.73 0.16 -13.35 16 17 C 0.09 4.58 5.13 -21.29 -0.11 4.47 16 18 C -0.53 -30.29 8.80 23.46 0.21 -30.09 16 19 H 0.06 3.33 6.60 -2.91 -0.02 3.31 16 20 C 0.02 0.86 5.42 85.26 0.46 1.32 16 21 N -0.85 -49.37 13.65 21.82 0.30 -49.07 16 22 Si 1.10 55.28 24.89 68.60 1.71 56.99 16 23 H -0.26 -11.73 6.45 99.48 0.64 -11.09 16 24 H -0.28 -14.97 7.01 99.48 0.70 -14.27 16 25 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 26 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 27 H 0.10 1.39 8.07 -2.39 -0.02 1.37 16 28 H 0.08 1.53 6.44 -2.39 -0.02 1.52 16 29 H 0.10 2.17 6.36 -2.39 -0.02 2.16 16 30 H 0.05 1.77 5.71 -2.39 -0.01 1.76 16 31 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16 32 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.04 1.17 6.43 -2.39 -0.02 1.16 16 36 H 0.07 0.94 8.14 -2.39 -0.02 0.93 16 37 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 39 H 0.05 0.88 6.43 -2.39 -0.02 0.87 16 40 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.12 3.44 7.31 -2.39 -0.02 3.42 16 43 H 0.09 3.42 6.48 -2.39 -0.02 3.41 16 44 H 0.12 4.26 8.06 -2.91 -0.02 4.23 16 45 H 0.13 4.27 8.06 -2.91 -0.02 4.25 16 46 H 0.12 4.57 8.06 -2.91 -0.02 4.55 16 47 H 0.10 4.97 4.43 -2.91 -0.01 4.95 16 48 H 0.28 15.66 8.73 -92.71 -0.81 14.85 16 Total: -1.00 -71.71 373.59 6.02 -65.69 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: 0.81 Total: 23.71 kcal Atomic # 6 Polarization: -51.82 SS G_CDS: 5.68 Total: -46.14 kcal Atomic # 7 Polarization: -68.71 SS G_CDS: -2.14 Total: -70.84 kcal Atomic # 8 Polarization: -29.37 SS G_CDS: -0.05 Total: -29.41 kcal Atomic # 14 Polarization: 55.28 SS G_CDS: 1.71 Total: 56.99 kcal Total: -71.71 6.02 -65.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843684062.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.849 kcal (2) G-P(sol) polarization free energy of solvation -71.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds