Wall clock time and date at job start Tue Mar 31 2020 08:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52995 * 109.47459 * 12.67491 * 3 2 1 5 5 C 1.50695 * 109.47184 * 304.79130 * 4 3 2 6 6 O 1.21284 * 120.00514 * 117.49420 * 5 4 3 7 7 N 1.34781 * 120.00041 * 297.48910 * 5 4 3 8 8 C 1.46927 * 120.62547 * 5.53599 * 7 5 4 9 9 C 1.53199 * 108.77553 * 233.58291 * 8 7 5 10 10 C 1.53047 * 109.31059 * 305.36788 * 9 8 7 11 11 C 1.53040 * 109.53651 * 61.36344 * 10 9 8 12 12 H 1.08999 * 109.49916 * 58.62271 * 11 10 9 13 13 C 1.50700 * 109.49328 * 178.68267 * 11 10 9 14 14 H 1.07998 * 119.99846 * 119.99882 * 13 11 10 15 15 C 1.37880 * 120.00103 * 300.00178 * 13 11 10 16 16 N 1.31512 * 120.00054 * 180.02562 * 15 13 11 17 17 Si 1.86802 * 119.99771 * 359.97438 * 15 13 11 18 18 H 1.48497 * 109.46953 * 90.00495 * 17 15 13 19 19 H 1.48503 * 109.46735 * 210.00457 * 17 15 13 20 20 H 1.48498 * 109.46952 * 330.00214 * 17 15 13 21 21 C 1.46925 * 120.63443 * 185.25340 * 7 5 4 22 22 C 1.52997 * 109.47547 * 184.78456 * 4 3 2 23 23 C 1.52995 * 109.47218 * 179.97438 * 22 4 3 24 24 C 1.52994 * 109.47036 * 60.00672 * 23 22 4 25 25 C 1.52997 * 109.47049 * 299.99490 * 24 23 22 26 26 C 1.53004 * 109.46917 * 64.78548 * 4 3 2 27 27 H 4.44649 * 5.63299 * 179.97438 * 4 1 2 28 28 H 1.09001 * 109.47192 * 252.67212 * 3 2 1 29 29 H 1.09000 * 109.46900 * 132.67392 * 3 2 1 30 30 H 1.09000 * 109.59077 * 353.37077 * 8 7 5 31 31 H 1.09001 * 109.58955 * 113.65821 * 8 7 5 32 32 H 1.09000 * 109.49564 * 65.31827 * 9 8 7 33 33 H 1.08993 * 109.49622 * 185.41571 * 9 8 7 34 34 H 1.08996 * 109.45444 * 181.38462 * 10 9 8 35 35 H 1.08999 * 109.45691 * 301.33921 * 10 9 8 36 36 H 0.97002 * 119.99780 * 179.97438 * 16 15 13 37 37 H 1.09000 * 109.58842 * 246.20570 * 21 7 5 38 38 H 1.08995 * 109.58562 * 6.62756 * 21 7 5 39 39 H 1.09007 * 109.46626 * 60.00188 * 22 4 3 40 40 H 1.08997 * 109.47349 * 300.00804 * 22 4 3 41 41 H 1.09002 * 109.47645 * 300.00261 * 23 22 4 42 42 H 1.09008 * 109.47174 * 179.97438 * 23 22 4 43 43 H 1.08998 * 109.47459 * 59.99802 * 24 23 22 44 44 H 1.09004 * 109.47564 * 179.97438 * 24 23 22 45 45 H 1.09007 * 109.47106 * 180.02562 * 25 24 23 46 46 H 1.08998 * 109.47245 * 300.00443 * 25 24 23 47 47 H 1.08996 * 109.47283 * 300.00023 * 26 4 3 48 48 H 1.08998 * 109.47198 * 60.00424 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1567 -1.4064 -0.3165 5 6 2.5603 -2.3884 0.6586 6 8 1.8385 -3.2775 0.2592 7 7 2.8291 -2.2788 1.9748 8 6 3.6013 -1.1394 2.4887 9 6 4.7808 -1.6725 3.3082 10 6 4.2576 -2.6176 4.3924 11 6 3.5484 -3.8051 3.7375 12 1 4.2435 -4.3259 3.0790 13 6 3.0620 -4.7513 4.8048 14 1 2.0082 -4.9707 4.8925 15 6 3.9624 -5.3370 5.6694 16 7 3.5380 -6.1631 6.6005 17 14 5.7852 -4.9581 5.5172 18 1 6.1185 -3.7826 6.3612 19 1 6.5742 -6.1320 5.9696 20 1 6.1119 -4.6585 4.0999 21 6 2.3503 -3.2932 2.9237 22 6 4.6819 -1.4338 -0.1995 23 6 5.1925 -2.8410 -0.5154 24 6 4.7834 -3.2243 -1.9389 25 6 3.2582 -3.1970 -2.0560 26 6 2.7475 -1.7892 -1.7402 27 1 -1.0498 -0.0004 0.0001 28 1 3.0092 0.3069 0.9810 29 1 3.0090 0.6974 -0.7556 30 1 3.9748 -0.5451 1.6548 31 1 2.9639 -0.5215 3.1212 32 1 5.4641 -2.2130 2.6532 33 1 5.3060 -0.8391 3.7746 34 1 5.0926 -2.9792 4.9926 35 1 3.5555 -2.0830 5.0322 36 1 4.1714 -6.5754 7.2085 37 1 1.6135 -2.8488 3.5929 38 1 1.8980 -4.1205 2.3768 39 1 4.9734 -1.1611 0.8149 40 1 5.1133 -0.7234 -0.9048 41 1 4.7612 -3.5510 0.1903 42 1 6.2792 -2.8604 -0.4324 43 1 5.2148 -2.5144 -2.6446 44 1 5.1475 -4.2267 -2.1642 45 1 2.9666 -3.4706 -3.0701 46 1 2.8268 -3.9070 -1.3503 47 1 1.6609 -1.7697 -1.8237 48 1 3.1788 -1.0789 -2.4456 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855256250.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:29:52 Heat of formation + Delta-G solvation = -2.030530 kcal Electronic energy + Delta-G solvation = -27169.378099 eV Core-core repulsion = 23803.741042 eV Total energy + Delta-G solvation = -3365.637057 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.30854 -39.21405 -37.97765 -35.86445 -35.09858 -33.56364 -32.66084 -31.92445 -31.42433 -27.81305 -27.26686 -26.70802 -23.77347 -23.46295 -23.12624 -21.98939 -20.85689 -19.65178 -19.08879 -18.82452 -17.42524 -17.08077 -16.76268 -16.31217 -16.02262 -15.60858 -15.29797 -15.09736 -14.98732 -14.81655 -14.62424 -14.46982 -14.06015 -13.91869 -13.78918 -13.26956 -13.16530 -13.00968 -12.94106 -12.80520 -12.59077 -12.37933 -12.10601 -11.99278 -11.83658 -11.62566 -11.50530 -11.46781 -11.25166 -11.13170 -11.06450 -10.91691 -10.70315 -10.63428 -10.23203 -9.47018 -8.33377 -6.38945 1.26561 1.34581 1.45143 1.71408 1.88492 1.96705 2.12173 2.29918 3.01519 3.35723 3.46665 3.74675 3.80983 3.92392 3.96806 4.05951 4.19393 4.23934 4.30148 4.33184 4.43242 4.45783 4.52394 4.56160 4.64905 4.70374 4.73341 4.78701 4.79558 4.88986 4.93488 4.96938 5.04215 5.09864 5.13252 5.15982 5.18265 5.27947 5.33613 5.34968 5.41153 5.43565 5.46883 5.63783 5.65857 5.76241 6.24000 6.60974 6.67388 6.74077 7.26006 7.32130 8.83619 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.017818 B = 0.005245 C = 0.004856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.110664 B = 5337.121583 C = 5765.062588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.204 4.204 3 C -0.017 4.017 4 C -0.064 4.064 5 C 0.521 3.479 6 O -0.586 6.586 7 N -0.606 5.606 8 C 0.082 3.918 9 C -0.134 4.134 10 C -0.121 4.121 11 C 0.014 3.986 12 H 0.014 0.986 13 C -0.525 4.525 14 H 0.027 0.973 15 C 0.012 3.988 16 N -0.950 5.950 17 Si 0.957 3.043 18 H -0.255 1.255 19 H -0.302 1.302 20 H -0.249 1.249 21 C 0.141 3.859 22 C -0.120 4.120 23 C -0.126 4.126 24 C -0.112 4.112 25 C -0.136 4.136 26 C -0.085 4.085 27 H 0.230 0.770 28 H 0.118 0.882 29 H 0.137 0.863 30 H 0.139 0.861 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.108 0.892 34 H 0.039 0.961 35 H 0.059 0.941 36 H 0.266 0.734 37 H 0.051 0.949 38 H 0.047 0.953 39 H 0.093 0.907 40 H 0.119 0.881 41 H 0.020 0.980 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.051 0.949 45 H 0.064 0.936 46 H 0.045 0.955 47 H 0.043 0.957 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.528 19.197 -17.239 26.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.204 4.204 3 C -0.053 4.053 4 C -0.067 4.067 5 C 0.311 3.689 6 O -0.467 6.467 7 N -0.338 5.338 8 C -0.038 4.038 9 C -0.172 4.172 10 C -0.159 4.159 11 C -0.006 4.006 12 H 0.032 0.968 13 C -0.563 4.563 14 H 0.046 0.954 15 C -0.185 4.185 16 N -0.590 5.590 17 Si 0.783 3.217 18 H -0.181 1.181 19 H -0.230 1.230 20 H -0.173 1.173 21 C 0.018 3.982 22 C -0.157 4.157 23 C -0.164 4.164 24 C -0.149 4.149 25 C -0.173 4.173 26 C -0.123 4.123 27 H 0.246 0.754 28 H 0.135 0.865 29 H 0.154 0.846 30 H 0.156 0.844 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.126 0.874 34 H 0.057 0.943 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.111 0.889 40 H 0.138 0.862 41 H 0.039 0.961 42 H 0.102 0.898 43 H 0.109 0.891 44 H 0.070 0.930 45 H 0.082 0.918 46 H 0.063 0.937 47 H 0.062 0.938 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.188 18.632 -17.303 26.170 hybrid contribution -0.443 -1.322 0.901 1.660 sum 5.745 17.310 -16.402 24.529 Atomic orbital electron populations 1.25532 0.97093 1.00109 1.01277 1.23501 0.95498 1.00948 1.00461 1.19427 0.84209 0.95324 1.06306 1.20895 0.97777 0.93263 0.94728 1.21158 0.79665 0.85420 0.82659 1.90588 1.39736 1.38022 1.78343 1.48240 1.54092 1.25038 1.06400 1.22706 0.93067 0.87802 1.00268 1.22045 0.97713 1.00008 0.97446 1.21849 0.99059 0.96845 0.98127 1.19364 0.93938 0.93543 0.93713 0.96753 1.21244 0.94080 1.26200 1.14812 0.95423 1.25917 1.04176 0.94179 0.94236 1.70061 1.36860 1.31884 1.20176 0.85727 0.78958 0.77001 0.80028 1.18061 1.22996 1.17268 1.21296 0.96380 0.90343 0.90143 1.22075 0.90193 0.98331 1.05097 1.21567 1.01450 0.96617 0.96725 1.21510 0.94872 1.01662 0.96870 1.21740 0.96592 0.97817 1.01183 1.21354 1.00070 0.97294 0.93536 0.75379 0.86458 0.84570 0.84397 0.90432 0.91633 0.87415 0.94319 0.92181 0.92465 0.93034 0.93432 0.88909 0.86225 0.96069 0.89790 0.89121 0.92990 0.91759 0.93657 0.93848 0.87966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -5.41 19.25 74.32 1.43 -3.97 16 2 C -0.20 -4.82 11.38 31.13 0.35 -4.47 16 3 C -0.02 -0.28 4.46 28.79 0.13 -0.15 16 4 C -0.06 -1.38 0.28 -52.93 -0.01 -1.39 16 5 C 0.52 17.44 4.01 87.65 0.35 17.79 16 6 O -0.59 -25.34 13.19 -3.04 -0.04 -25.38 16 7 N -0.61 -20.44 2.96 -818.06 -2.42 -22.86 16 8 C 0.08 1.95 4.33 86.36 0.37 2.32 16 9 C -0.13 -3.51 5.74 30.68 0.18 -3.33 16 10 C -0.12 -4.67 4.65 30.62 0.14 -4.53 16 11 C 0.01 0.66 1.86 -11.32 -0.02 0.64 16 12 H 0.01 0.72 7.20 -2.39 -0.02 0.70 16 13 C -0.52 -30.82 9.15 25.60 0.23 -30.59 16 14 H 0.03 1.82 7.99 -2.91 -0.02 1.79 16 15 C 0.01 0.71 5.45 84.66 0.46 1.17 16 16 N -0.95 -60.47 13.96 21.45 0.30 -60.17 16 17 Si 0.96 44.91 24.39 68.60 1.67 46.59 16 18 H -0.26 -10.97 6.86 99.48 0.68 -10.29 16 19 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 20 H -0.25 -10.88 6.53 99.48 0.65 -10.23 16 21 C 0.14 6.21 5.67 86.51 0.49 6.70 16 22 C -0.12 -1.94 4.41 30.59 0.13 -1.81 16 23 C -0.13 -2.75 5.70 30.59 0.17 -2.57 16 24 C -0.11 -2.28 5.92 30.59 0.18 -2.10 16 25 C -0.14 -3.46 5.63 30.61 0.17 -3.29 16 26 C -0.08 -1.87 4.17 30.61 0.13 -1.75 16 27 H 0.23 4.27 7.80 -4.43 -0.03 4.23 16 28 H 0.12 1.56 4.80 -2.39 -0.01 1.55 16 29 H 0.14 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.14 2.15 2.35 -2.39 -0.01 2.14 16 31 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.06 1.72 7.69 -2.39 -0.02 1.71 16 33 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.04 1.57 3.25 -2.39 -0.01 1.57 16 35 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 37 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.05 2.38 7.04 -2.39 -0.02 2.37 16 39 H 0.09 1.37 4.02 -2.38 -0.01 1.36 16 40 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.02 0.65 7.22 -2.39 -0.02 0.63 16 42 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 43 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 45 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 46 H 0.04 1.59 5.60 -2.39 -0.01 1.58 16 47 H 0.04 1.17 7.31 -2.39 -0.02 1.16 16 48 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -79.55 347.17 5.27 -74.27 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: 0.86 Total: 18.88 kcal Atomic # 6 Polarization: -36.21 SS G_CDS: 4.90 Total: -31.32 kcal Atomic # 7 Polarization: -80.91 SS G_CDS: -2.12 Total: -83.04 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -0.04 Total: -25.38 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.67 Total: 46.59 kcal Total: -79.55 5.27 -74.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855256250.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.243 kcal (2) G-P(sol) polarization free energy of solvation -79.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds