Wall clock time and date at job start Tue Mar 31 2020 08:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46947 * 2 1 4 4 C 1.53001 * 109.46947 * 179.97438 * 3 2 1 5 5 C 1.52992 * 109.46889 * 179.97438 * 4 3 2 6 6 N 1.46499 * 109.47406 * 59.99550 * 4 3 2 7 7 C 1.34780 * 119.99550 * 59.99614 * 6 4 3 8 8 O 1.21274 * 120.00259 * 0.02562 * 7 6 4 9 9 C 1.50697 * 119.99723 * 179.97438 * 7 6 4 10 10 C 1.53006 * 109.47107 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47144 * 180.02562 * 10 9 7 12 12 C 1.50696 * 109.46928 * 179.97438 * 11 10 9 13 13 H 1.08003 * 120.00364 * 0.02562 * 12 11 10 14 14 C 1.37873 * 119.99887 * 179.97438 * 12 11 10 15 15 N 1.31522 * 120.00110 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00132 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47090 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.47274 * 120.00203 * 16 14 12 19 19 H 1.48499 * 109.47346 * 240.00102 * 16 14 12 20 20 C 1.50706 * 109.46826 * 299.99881 * 4 3 2 21 21 C 1.38237 * 119.99744 * 150.00542 * 20 4 3 22 22 C 1.38235 * 119.99712 * 180.02562 * 21 20 4 23 23 C 1.38234 * 120.00220 * 359.94731 * 22 21 20 24 24 C 1.38233 * 120.00037 * 0.28719 * 23 22 21 25 25 C 1.38234 * 120.00223 * 330.01753 * 20 4 3 26 26 H 1.08991 * 109.47333 * 60.00541 * 1 2 3 27 27 H 1.09001 * 109.46958 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47154 * 299.99672 * 1 2 3 29 29 H 1.09000 * 109.47053 * 239.99550 * 2 1 3 30 30 H 1.09001 * 109.47069 * 119.99938 * 2 1 3 31 31 H 1.08996 * 109.47173 * 59.99736 * 3 2 1 32 32 H 1.09001 * 109.46660 * 299.99862 * 3 2 1 33 33 H 1.09000 * 109.47055 * 179.97438 * 5 4 3 34 34 H 1.09001 * 109.47313 * 299.99349 * 5 4 3 35 35 H 1.09000 * 109.47547 * 59.99968 * 5 4 3 36 36 H 0.96996 * 120.00154 * 240.00318 * 6 4 3 37 37 H 1.09009 * 109.47428 * 300.00432 * 9 7 6 38 38 H 1.09001 * 109.47068 * 60.00404 * 9 7 6 39 39 H 1.09000 * 109.46902 * 299.99867 * 10 9 7 40 40 H 1.08998 * 109.46904 * 59.99898 * 10 9 7 41 41 H 1.08996 * 109.47418 * 300.00034 * 11 10 9 42 42 H 1.09001 * 109.47096 * 59.99662 * 11 10 9 43 43 H 0.96999 * 119.99958 * 179.97438 * 15 14 12 44 44 H 1.08005 * 120.00088 * 359.97438 * 21 20 4 45 45 H 1.07999 * 119.99770 * 179.97438 * 22 21 20 46 46 H 1.08002 * 119.99744 * 180.02562 * 23 22 21 47 47 H 1.07998 * 120.00395 * 179.72811 * 24 23 22 48 48 H 1.07998 * 119.99975 * 0.02562 * 25 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0799 2.8850 0.0000 6 7 4.0589 0.7517 -1.1951 7 6 3.7337 1.2119 -2.4195 8 8 3.0369 2.1981 -2.5313 9 6 4.2371 0.5016 -3.6496 10 6 3.7280 1.2228 -4.8992 11 6 4.2385 0.5013 -6.1481 12 6 3.7365 1.2114 -7.3789 13 1 3.1158 2.0897 -7.2802 14 6 4.0705 0.7404 -8.6309 15 7 4.8268 -0.3289 -8.7510 16 14 3.4489 1.6209 -10.1565 17 1 2.6240 2.7879 -9.7530 18 1 4.6044 2.0876 -10.9641 19 1 2.6245 0.6875 -10.9655 20 6 4.0717 0.7323 1.2315 21 6 5.2797 0.0609 1.1979 22 6 5.7397 -0.5910 2.3268 23 6 4.9923 -0.5706 3.4895 24 6 3.7821 0.0966 3.5217 25 6 3.3240 0.7519 2.3940 26 1 -0.3633 0.5137 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6766 1.9563 -0.8900 33 1 5.1699 2.8850 0.0009 34 1 3.7170 3.3983 -0.8905 35 1 3.7162 3.3994 0.8895 36 1 4.6165 -0.0370 -1.1057 37 1 5.3272 0.5020 -3.6489 38 1 3.8742 -0.5262 -3.6497 39 1 2.6380 1.2227 -4.9000 40 1 4.0912 2.2505 -4.8988 41 1 5.3284 0.5010 -6.1475 42 1 3.8749 -0.5263 -6.1482 43 1 5.0615 -0.6605 -9.6319 44 1 5.8636 0.0451 0.2895 45 1 6.6832 -1.1158 2.3004 46 1 5.3519 -1.0796 4.3715 47 1 3.1961 0.1088 4.4287 48 1 2.3800 1.2759 2.4200 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889479205.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:49:06 Heat of formation + Delta-G solvation = -41.223584 kcal Electronic energy + Delta-G solvation = -24913.424278 eV Core-core repulsion = 21546.087683 eV Total energy + Delta-G solvation = -3367.336595 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.80231 -39.01343 -36.51032 -34.13057 -33.74254 -32.20605 -31.61520 -31.04893 -29.68605 -27.67094 -26.80835 -24.27674 -23.31098 -22.71344 -21.63357 -20.90336 -19.79372 -19.38407 -17.92799 -16.50416 -15.99723 -15.95795 -15.46868 -15.28257 -14.74437 -14.63974 -14.40436 -14.24487 -13.67267 -13.64682 -13.56465 -13.19745 -12.78585 -12.67801 -12.29759 -12.27145 -12.17704 -11.87109 -11.77528 -11.54823 -11.31145 -11.30477 -10.84134 -10.80826 -10.79602 -10.63094 -10.56710 -10.49258 -9.65174 -9.49424 -9.23303 -9.17273 -9.13187 -8.95037 -8.78692 -8.30708 -5.96238 -3.97417 1.05544 1.11965 2.97373 3.27186 3.34593 3.41897 3.47695 3.54643 4.29650 4.50683 4.54444 4.70255 4.75680 4.85134 4.94698 5.02861 5.15235 5.20244 5.27649 5.39255 5.39958 5.44008 5.56832 5.61695 5.70403 5.72062 5.74938 5.75463 5.82773 5.83829 5.90106 6.07348 6.14826 6.20034 6.23629 6.26285 6.28173 6.30802 6.39858 6.67411 6.70695 6.76006 6.96410 7.19312 7.67590 7.73855 7.86193 8.04915 8.48730 8.52742 9.10078 9.66549 11.15333 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.022884 B = 0.002757 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.286316 B =10154.361603 C =10624.541861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.131 4.131 4 C 0.218 3.782 5 C -0.159 4.159 6 N -0.732 5.732 7 C 0.517 3.483 8 O -0.532 6.532 9 C -0.140 4.140 10 C -0.093 4.093 11 C 0.020 3.980 12 C -0.516 4.516 13 H 0.056 0.944 14 C 0.055 3.945 15 N -0.898 5.898 16 Si 0.891 3.109 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.076 4.076 21 C -0.118 4.118 22 C -0.116 4.116 23 C -0.124 4.124 24 C -0.119 4.119 25 C -0.108 4.108 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.055 0.945 34 H 0.085 0.915 35 H 0.060 0.940 36 H 0.397 0.603 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.015 0.985 42 H 0.015 0.985 43 H 0.259 0.741 44 H 0.123 0.877 45 H 0.122 0.878 46 H 0.120 0.880 47 H 0.121 0.879 48 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.934 -1.222 27.304 27.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.169 4.169 4 C 0.132 3.868 5 C -0.217 4.217 6 N -0.386 5.386 7 C 0.305 3.695 8 O -0.407 6.407 9 C -0.180 4.180 10 C -0.131 4.131 11 C -0.017 4.017 12 C -0.554 4.554 13 H 0.075 0.925 14 C -0.146 4.146 15 N -0.538 5.538 16 Si 0.719 3.281 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.076 4.076 21 C -0.136 4.136 22 C -0.134 4.134 23 C -0.142 4.142 24 C -0.137 4.137 25 C -0.126 4.126 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.111 0.889 33 H 0.074 0.926 34 H 0.104 0.896 35 H 0.079 0.921 36 H 0.233 0.767 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.033 0.967 42 H 0.033 0.967 43 H 0.069 0.931 44 H 0.141 0.859 45 H 0.140 0.860 46 H 0.138 0.862 47 H 0.139 0.861 48 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.368 -0.604 27.073 27.114 hybrid contribution 0.124 -0.126 -0.759 0.779 sum -1.244 -0.730 26.314 26.354 Atomic orbital electron populations 1.21748 0.96005 1.01363 1.01679 1.21524 0.95642 0.96692 1.02074 1.22093 0.93269 0.97784 1.03785 1.19086 0.93936 0.91792 0.81950 1.22206 1.01090 0.94707 1.03652 1.46370 1.54829 1.32239 1.05181 1.21152 0.79457 0.84485 0.84380 1.90603 1.37292 1.26181 1.86670 1.21861 1.02186 1.00793 0.93160 1.21421 1.00322 0.98984 0.92369 1.19135 0.96285 0.95522 0.90782 1.21312 1.31008 1.12141 0.90962 0.92543 1.25024 0.95273 0.95116 0.99157 1.69977 1.37287 1.23222 1.23295 0.86547 0.78640 0.79778 0.83141 1.19684 1.21058 1.21051 1.19892 0.94880 0.97919 0.94958 1.21002 0.95825 0.98036 0.98776 1.21138 0.99881 0.99327 0.93016 1.21164 0.95177 0.99758 0.98112 1.21145 0.96394 0.97910 0.98220 1.21071 0.99716 0.99523 0.92331 0.92576 0.92992 0.93116 0.91969 0.92109 0.91472 0.88907 0.92599 0.89574 0.92112 0.76722 0.89528 0.89533 0.92736 0.92734 0.96666 0.96665 0.93150 0.85893 0.85970 0.86207 0.86062 0.85581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.91 37.16 0.37 -1.14 16 2 C -0.12 -1.31 5.45 -26.73 -0.15 -1.45 16 3 C -0.13 -1.48 3.55 -26.73 -0.09 -1.58 16 4 C 0.22 2.39 0.59 -132.97 -0.08 2.31 16 5 C -0.16 -1.85 8.38 37.15 0.31 -1.54 16 6 N -0.73 -8.60 4.09 -48.69 -0.20 -8.80 16 7 C 0.52 7.97 7.25 -10.99 -0.08 7.89 16 8 O -0.53 -9.83 12.19 5.56 0.07 -9.76 16 9 C -0.14 -2.30 5.70 -27.88 -0.16 -2.46 16 10 C -0.09 -2.00 4.44 -26.73 -0.12 -2.12 16 11 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 12 C -0.52 -14.99 9.11 -34.44 -0.31 -15.31 16 13 H 0.06 1.62 7.74 -52.48 -0.41 1.22 16 14 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 16 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16 17 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 20 C -0.08 -0.72 4.07 -104.62 -0.43 -1.15 16 21 C -0.12 -1.05 8.96 -39.58 -0.35 -1.40 16 22 C -0.12 -0.92 10.05 -39.58 -0.40 -1.31 16 23 C -0.12 -0.93 10.05 -39.58 -0.40 -1.33 16 24 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 25 C -0.11 -0.93 7.77 -39.58 -0.31 -1.24 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.76 7.61 -51.93 -0.39 0.36 16 30 H 0.06 0.61 6.17 -51.93 -0.32 0.29 16 31 H 0.07 0.65 6.51 -51.93 -0.34 0.31 16 32 H 0.09 1.32 6.17 -51.93 -0.32 1.00 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.09 1.23 6.16 -51.93 -0.32 0.91 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.40 3.86 6.67 -40.82 -0.27 3.59 16 37 H 0.09 1.30 8.14 -51.92 -0.42 0.88 16 38 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.05 1.22 8.10 -51.93 -0.42 0.80 16 40 H 0.05 1.22 8.10 -51.93 -0.42 0.80 16 41 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 44 H 0.12 0.98 6.71 -52.48 -0.35 0.63 16 45 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 46 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 47 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 48 H 0.13 0.98 6.16 -52.49 -0.32 0.65 16 LS Contribution 378.05 15.07 5.70 5.70 Total: -1.00 -32.38 378.05 -9.64 -42.03 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -8.10 Total: 1.48 kcal Atomic # 6 Polarization: -18.41 SS G_CDS: -2.83 Total: -21.24 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: 0.54 Total: -35.31 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.07 Total: -9.76 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.38 -9.64 -42.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889479205.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.802 kcal (2) G-P(sol) polarization free energy of solvation -32.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds