Wall clock time and date at job start Tue Mar 31 2020 08:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46947 * 2 1 4 4 C 1.53001 * 109.46947 * 179.97438 * 3 2 1 5 5 C 1.52992 * 109.46889 * 179.97438 * 4 3 2 6 6 N 1.46499 * 109.47406 * 59.99550 * 4 3 2 7 7 C 1.34780 * 119.99550 * 59.99614 * 6 4 3 8 8 O 1.21274 * 120.00259 * 0.02562 * 7 6 4 9 9 C 1.50697 * 119.99723 * 179.97438 * 7 6 4 10 10 C 1.53006 * 109.47107 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47144 * 180.02562 * 10 9 7 12 12 C 1.50696 * 109.46928 * 179.97438 * 11 10 9 13 13 H 1.08003 * 120.00364 * 0.02562 * 12 11 10 14 14 C 1.37873 * 119.99887 * 179.97438 * 12 11 10 15 15 N 1.31522 * 120.00110 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00132 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47090 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.47274 * 120.00203 * 16 14 12 19 19 H 1.48499 * 109.47346 * 240.00102 * 16 14 12 20 20 C 1.50706 * 109.46826 * 299.99881 * 4 3 2 21 21 C 1.38237 * 119.99744 * 150.00542 * 20 4 3 22 22 C 1.38235 * 119.99712 * 180.02562 * 21 20 4 23 23 C 1.38234 * 120.00220 * 359.94731 * 22 21 20 24 24 C 1.38233 * 120.00037 * 0.28719 * 23 22 21 25 25 C 1.38234 * 120.00223 * 330.01753 * 20 4 3 26 26 H 1.08991 * 109.47333 * 60.00541 * 1 2 3 27 27 H 1.09001 * 109.46958 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47154 * 299.99672 * 1 2 3 29 29 H 1.09000 * 109.47053 * 239.99550 * 2 1 3 30 30 H 1.09001 * 109.47069 * 119.99938 * 2 1 3 31 31 H 1.08996 * 109.47173 * 59.99736 * 3 2 1 32 32 H 1.09001 * 109.46660 * 299.99862 * 3 2 1 33 33 H 1.09000 * 109.47055 * 179.97438 * 5 4 3 34 34 H 1.09001 * 109.47313 * 299.99349 * 5 4 3 35 35 H 1.09000 * 109.47547 * 59.99968 * 5 4 3 36 36 H 0.96996 * 120.00154 * 240.00318 * 6 4 3 37 37 H 1.09009 * 109.47428 * 300.00432 * 9 7 6 38 38 H 1.09001 * 109.47068 * 60.00404 * 9 7 6 39 39 H 1.09000 * 109.46902 * 299.99867 * 10 9 7 40 40 H 1.08998 * 109.46904 * 59.99898 * 10 9 7 41 41 H 1.08996 * 109.47418 * 300.00034 * 11 10 9 42 42 H 1.09001 * 109.47096 * 59.99662 * 11 10 9 43 43 H 0.96999 * 119.99958 * 179.97438 * 15 14 12 44 44 H 1.08005 * 120.00088 * 359.97438 * 21 20 4 45 45 H 1.07999 * 119.99770 * 179.97438 * 22 21 20 46 46 H 1.08002 * 119.99744 * 180.02562 * 23 22 21 47 47 H 1.07998 * 120.00395 * 179.72811 * 24 23 22 48 48 H 1.07998 * 119.99975 * 0.02562 * 25 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0799 2.8850 0.0000 6 7 4.0589 0.7517 -1.1951 7 6 3.7337 1.2119 -2.4195 8 8 3.0369 2.1981 -2.5313 9 6 4.2371 0.5016 -3.6496 10 6 3.7280 1.2228 -4.8992 11 6 4.2385 0.5013 -6.1481 12 6 3.7365 1.2114 -7.3789 13 1 3.1158 2.0897 -7.2802 14 6 4.0705 0.7404 -8.6309 15 7 4.8268 -0.3289 -8.7510 16 14 3.4489 1.6209 -10.1565 17 1 2.6240 2.7879 -9.7530 18 1 4.6044 2.0876 -10.9641 19 1 2.6245 0.6875 -10.9655 20 6 4.0717 0.7323 1.2315 21 6 5.2797 0.0609 1.1979 22 6 5.7397 -0.5910 2.3268 23 6 4.9923 -0.5706 3.4895 24 6 3.7821 0.0966 3.5217 25 6 3.3240 0.7519 2.3940 26 1 -0.3633 0.5137 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6766 1.9563 -0.8900 33 1 5.1699 2.8850 0.0009 34 1 3.7170 3.3983 -0.8905 35 1 3.7162 3.3994 0.8895 36 1 4.6165 -0.0370 -1.1057 37 1 5.3272 0.5020 -3.6489 38 1 3.8742 -0.5262 -3.6497 39 1 2.6380 1.2227 -4.9000 40 1 4.0912 2.2505 -4.8988 41 1 5.3284 0.5010 -6.1475 42 1 3.8749 -0.5263 -6.1482 43 1 5.0615 -0.6605 -9.6319 44 1 5.8636 0.0451 0.2895 45 1 6.6832 -1.1158 2.3004 46 1 5.3519 -1.0796 4.3715 47 1 3.1961 0.1088 4.4287 48 1 2.3800 1.2759 2.4200 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889479205.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:49:05 Heat of formation + Delta-G solvation = -58.014704 kcal Electronic energy + Delta-G solvation = -24914.152396 eV Core-core repulsion = 21546.087683 eV Total energy + Delta-G solvation = -3368.064713 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.74037 -39.95797 -37.47042 -36.04790 -34.70365 -34.01901 -32.70774 -31.69570 -30.52918 -29.43572 -27.68700 -25.96793 -24.37677 -23.38063 -22.51623 -22.31412 -21.22241 -20.39195 -18.96729 -18.30552 -17.29440 -16.87272 -16.67450 -16.46810 -15.98236 -15.74655 -15.47131 -15.12694 -14.91449 -14.73950 -14.36238 -14.27497 -14.21578 -13.74929 -13.59318 -13.46025 -13.22265 -13.09220 -13.00211 -12.76618 -12.54816 -12.50045 -12.38702 -12.32388 -11.94728 -11.72298 -11.63804 -11.55058 -11.48745 -11.40892 -11.21648 -10.55029 -10.46783 -10.09414 -9.77741 -9.56343 -8.20674 -6.30514 0.42904 0.52624 1.38831 1.39073 1.52980 1.73162 2.22319 2.41761 2.91274 3.12276 3.49696 3.75776 3.92847 4.02263 4.12796 4.16218 4.22544 4.23348 4.28165 4.32640 4.47116 4.54935 4.62510 4.65795 4.73689 4.75145 4.84135 4.92519 4.96324 4.98525 5.02099 5.07353 5.12130 5.17075 5.19615 5.24296 5.29065 5.32405 5.44549 5.53066 5.55707 5.60825 5.66857 5.75909 5.77307 5.87261 6.12187 6.27412 6.62764 6.85318 7.34613 7.38423 8.91134 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.022884 B = 0.002757 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.286316 B =10154.361603 C =10624.541861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C -0.128 4.128 4 C 0.220 3.780 5 C -0.155 4.155 6 N -0.714 5.714 7 C 0.521 3.479 8 O -0.566 6.566 9 C -0.133 4.133 10 C -0.078 4.078 11 C 0.026 3.974 12 C -0.545 4.545 13 H 0.051 0.949 14 C 0.002 3.998 15 N -0.930 5.930 16 Si 0.961 3.039 17 H -0.268 1.268 18 H -0.275 1.275 19 H -0.275 1.275 20 C -0.087 4.087 21 C -0.129 4.129 22 C -0.122 4.122 23 C -0.126 4.126 24 C -0.121 4.121 25 C -0.115 4.115 26 H 0.038 0.962 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.043 0.957 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.409 0.591 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.040 0.960 40 H 0.041 0.959 41 H 0.000 1.000 42 H -0.001 1.001 43 H 0.264 0.736 44 H 0.126 0.874 45 H 0.139 0.861 46 H 0.141 0.859 47 H 0.142 0.858 48 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.807 -1.734 29.189 29.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C -0.166 4.166 4 C 0.134 3.866 5 C -0.213 4.213 6 N -0.368 5.368 7 C 0.309 3.691 8 O -0.445 6.445 9 C -0.173 4.173 10 C -0.117 4.117 11 C -0.011 4.011 12 C -0.583 4.583 13 H 0.069 0.931 14 C -0.196 4.196 15 N -0.570 5.570 16 Si 0.786 3.214 17 H -0.192 1.192 18 H -0.200 1.200 19 H -0.200 1.200 20 C -0.087 4.087 21 C -0.147 4.147 22 C -0.139 4.139 23 C -0.144 4.144 24 C -0.139 4.139 25 C -0.133 4.133 26 H 0.057 0.943 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.247 0.753 37 H 0.123 0.877 38 H 0.120 0.880 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.018 0.982 42 H 0.017 0.983 43 H 0.073 0.927 44 H 0.144 0.856 45 H 0.157 0.843 46 H 0.159 0.841 47 H 0.160 0.840 48 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.225 -1.139 28.991 29.040 hybrid contribution 0.116 0.001 -1.267 1.273 sum -1.109 -1.138 27.724 27.769 Atomic orbital electron populations 1.21745 0.95502 1.01838 1.01629 1.21465 0.96077 0.96066 1.01704 1.22029 0.93506 0.98036 1.03014 1.19105 0.93773 0.91544 0.82143 1.22152 1.01094 0.95157 1.02930 1.46178 1.53950 1.32212 1.04448 1.20853 0.79189 0.83957 0.85137 1.90609 1.38967 1.27694 1.87216 1.21696 1.03199 1.00922 0.91496 1.21118 0.99231 0.98273 0.93041 1.19020 0.95128 0.94825 0.92149 1.21714 1.31481 1.12479 0.92643 0.93084 1.25913 0.95283 0.95850 1.02511 1.70078 1.38068 1.24429 1.24451 0.85452 0.78359 0.78690 0.78891 1.19214 1.20042 1.20048 1.19727 0.95650 0.98919 0.94410 1.21130 0.95745 0.98358 0.99517 1.21394 1.00637 0.99098 0.92814 1.21500 0.94937 0.99234 0.98690 1.21430 0.96667 0.97224 0.98604 1.21204 0.99968 0.99817 0.92337 0.94260 0.92254 0.91538 0.93798 0.90838 0.89687 0.92170 0.92462 0.92495 0.90561 0.75294 0.87743 0.87968 0.94146 0.94039 0.98180 0.98258 0.92673 0.85579 0.84332 0.84090 0.83995 0.84941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.91 71.98 0.71 -2.17 16 2 C -0.12 -2.38 5.45 30.60 0.17 -2.22 16 3 C -0.13 -2.84 3.55 30.60 0.11 -2.73 16 4 C 0.22 4.68 0.59 2.86 0.00 4.68 16 5 C -0.16 -3.60 8.38 71.98 0.60 -2.99 16 6 N -0.71 -16.48 4.09 -426.33 -1.74 -18.23 16 7 C 0.52 16.26 7.25 87.66 0.64 16.90 16 8 O -0.57 -21.74 12.19 -3.01 -0.04 -21.78 16 9 C -0.13 -4.39 5.70 29.85 0.17 -4.22 16 10 C -0.08 -3.48 4.44 30.60 0.14 -3.35 16 11 C 0.03 1.39 4.97 29.85 0.15 1.54 16 12 C -0.55 -32.41 9.11 25.60 0.23 -32.18 16 13 H 0.05 3.01 7.74 -2.91 -0.02 2.99 16 14 C 0.00 0.13 5.46 84.65 0.46 0.59 16 15 N -0.93 -56.94 13.29 21.45 0.28 -56.66 16 16 Si 0.96 45.61 29.54 68.60 2.03 47.64 16 17 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 18 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 19 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 20 C -0.09 -1.50 4.07 -19.86 -0.08 -1.58 16 21 C -0.13 -2.04 8.96 22.27 0.20 -1.84 16 22 C -0.12 -1.61 10.05 22.27 0.22 -1.38 16 23 C -0.13 -1.49 10.05 22.27 0.22 -1.27 16 24 C -0.12 -1.49 10.05 22.27 0.22 -1.27 16 25 C -0.12 -1.71 7.77 22.27 0.17 -1.54 16 26 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.04 1.05 7.61 -2.39 -0.02 1.04 16 30 H 0.07 1.34 6.17 -2.39 -0.01 1.32 16 31 H 0.08 1.55 6.51 -2.39 -0.02 1.53 16 32 H 0.06 1.77 6.17 -2.39 -0.01 1.76 16 33 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.06 1.67 6.16 -2.39 -0.01 1.66 16 35 H 0.08 1.48 8.14 -2.39 -0.02 1.47 16 36 H 0.41 7.49 6.67 -92.71 -0.62 6.88 16 37 H 0.10 3.07 8.14 -2.38 -0.02 3.05 16 38 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 39 H 0.04 1.87 8.10 -2.39 -0.02 1.85 16 40 H 0.04 1.92 8.10 -2.39 -0.02 1.90 16 41 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 42 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 43 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 44 H 0.13 1.81 6.71 -2.91 -0.02 1.79 16 45 H 0.14 1.31 8.06 -2.91 -0.02 1.29 16 46 H 0.14 1.04 8.06 -2.91 -0.02 1.01 16 47 H 0.14 1.11 8.06 -2.91 -0.02 1.09 16 48 H 0.13 1.73 6.16 -2.91 -0.02 1.71 16 Total: -1.00 -70.90 378.05 5.18 -65.72 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 0.31 Total: 18.33 kcal Atomic # 6 Polarization: -39.37 SS G_CDS: 4.34 Total: -35.02 kcal Atomic # 7 Polarization: -73.43 SS G_CDS: -1.46 Total: -74.89 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.04 Total: -21.78 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -70.90 5.18 -65.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889479205.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.706 kcal (2) G-P(sol) polarization free energy of solvation -70.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds