Wall clock time and date at job start Tue Mar 31 2020 08:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.46846 * 185.00166 * 4 3 2 6 6 N 1.46504 * 109.47054 * 304.99656 * 4 3 2 7 7 C 1.34773 * 120.00016 * 300.00122 * 6 4 3 8 8 O 1.21281 * 120.00106 * 0.02562 * 7 6 4 9 9 C 1.50705 * 120.00127 * 179.97438 * 7 6 4 10 10 C 1.52992 * 109.47177 * 180.02562 * 9 7 6 11 11 C 1.53006 * 109.46813 * 179.97438 * 10 9 7 12 12 C 1.50707 * 109.46796 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00027 * 0.02562 * 12 11 10 14 14 C 1.37882 * 119.99661 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99932 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 120.00241 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47050 * 89.99773 * 16 14 12 18 18 H 1.48490 * 109.47316 * 210.00171 * 16 14 12 19 19 H 1.48506 * 109.47041 * 330.00195 * 16 14 12 20 20 C 1.50697 * 109.47204 * 65.00067 * 4 3 2 21 21 C 1.38231 * 119.99972 * 29.72462 * 20 4 3 22 22 C 1.38235 * 119.99452 * 179.78872 * 21 20 4 23 23 C 1.38234 * 120.00332 * 0.43731 * 22 21 20 24 24 C 1.38233 * 120.00069 * 359.81786 * 23 22 21 25 25 C 1.38237 * 119.99568 * 209.99559 * 20 4 3 26 26 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 27 27 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 28 28 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 30 30 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 31 31 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 32 32 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 33 33 H 1.09001 * 109.47241 * 59.99481 * 5 4 3 34 34 H 1.08996 * 109.46751 * 179.97438 * 5 4 3 35 35 H 1.09002 * 109.46824 * 299.99583 * 5 4 3 36 36 H 0.97001 * 119.99663 * 120.00133 * 6 4 3 37 37 H 1.09002 * 109.47315 * 300.00852 * 9 7 6 38 38 H 1.09004 * 109.46685 * 60.00374 * 9 7 6 39 39 H 1.08998 * 109.47793 * 300.00121 * 10 9 7 40 40 H 1.09000 * 109.47139 * 60.01036 * 10 9 7 41 41 H 1.08994 * 109.47277 * 300.00135 * 11 10 9 42 42 H 1.09001 * 109.47073 * 60.00953 * 11 10 9 43 43 H 0.96998 * 119.99903 * 179.97438 * 15 14 12 44 44 H 1.07987 * 120.00337 * 0.02562 * 21 20 4 45 45 H 1.08006 * 119.99836 * 180.27799 * 22 21 20 46 46 H 1.08003 * 120.00072 * 179.83089 * 23 22 21 47 47 H 1.07995 * 120.00086 * 179.97438 * 24 23 22 48 48 H 1.08002 * 120.00171 * 359.97438 * 25 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 6 4.0801 2.8794 0.1251 6 7 4.0588 0.6499 1.1305 7 6 3.7337 1.0018 2.3902 8 8 3.0362 1.9742 2.5874 9 6 4.2360 0.1864 3.5539 10 6 3.7261 0.7956 4.8614 11 6 4.2356 -0.0327 6.0426 12 6 3.7328 0.5671 7.3306 13 1 3.1118 1.4503 7.3087 14 6 4.0659 -0.0119 8.5368 15 7 3.6276 0.5117 9.6608 16 14 5.1407 -1.5393 8.5747 17 1 6.5681 -1.1381 8.6560 18 1 4.7895 -2.3625 9.7596 19 1 4.9189 -2.3314 7.3382 20 6 4.0718 0.8421 -1.2886 21 6 3.3215 0.9584 -2.4438 22 6 3.7840 0.4115 -3.6261 23 6 4.9922 -0.2595 -3.6514 24 6 5.7400 -0.3804 -2.4950 25 6 5.2796 0.1702 -1.3136 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.7171 3.3136 1.0567 34 1 5.1701 2.8792 0.1251 35 1 3.7165 3.4689 -0.7165 36 1 4.6163 -0.1280 0.9728 37 1 3.8723 -0.8372 3.4641 38 1 5.3260 0.1860 3.5535 39 1 4.0895 1.8193 4.9514 40 1 2.6361 0.7956 4.8615 41 1 3.8718 -1.0562 5.9525 42 1 5.3256 -0.0331 6.0429 43 1 3.8615 0.1041 10.5093 44 1 2.3761 1.4798 -2.4234 45 1 3.1999 0.5063 -4.5297 46 1 5.3522 -0.6891 -4.5746 47 1 6.6837 -0.9050 -2.5146 48 1 5.8639 0.0759 -0.4101 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889479206.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:49:08 Heat of formation + Delta-G solvation = -55.383963 kcal Electronic energy + Delta-G solvation = -24979.611820 eV Core-core repulsion = 21611.661184 eV Total energy + Delta-G solvation = -3367.950635 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.73381 -39.94839 -37.48302 -36.05134 -34.67169 -34.11587 -32.78963 -31.70701 -30.60963 -29.77476 -27.69527 -25.84321 -24.29114 -23.39518 -22.46590 -22.15989 -21.24592 -20.40259 -19.10246 -18.56808 -17.31027 -16.89226 -16.68276 -16.26747 -15.96627 -15.77021 -15.45263 -15.14845 -14.88530 -14.78117 -14.66680 -14.32325 -14.26175 -13.81638 -13.60776 -13.49199 -13.27704 -13.11479 -13.01872 -12.74472 -12.64002 -12.44316 -12.33711 -11.95188 -11.78593 -11.73293 -11.71661 -11.57564 -11.49570 -11.45699 -11.31455 -10.74771 -10.48191 -10.09123 -9.78301 -9.56919 -8.27495 -6.32874 0.42997 0.52818 1.38150 1.41645 1.53747 1.75078 2.23429 2.39087 2.91384 3.07596 3.50060 3.75333 3.92198 4.02066 4.11710 4.15773 4.17919 4.22851 4.27499 4.32504 4.46495 4.54114 4.62171 4.65619 4.72645 4.75231 4.83537 4.91758 4.92840 4.96562 4.98150 5.01356 5.05656 5.07714 5.17530 5.23353 5.28679 5.32296 5.43675 5.52843 5.58164 5.60882 5.61477 5.67064 5.68779 5.77724 6.12299 6.31326 6.64855 6.75922 7.31267 7.37482 8.90213 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.020538 B = 0.002951 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.004608 B = 9487.345061 C = 9997.698908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.113 4.113 3 C -0.128 4.128 4 C 0.221 3.779 5 C -0.155 4.155 6 N -0.713 5.713 7 C 0.517 3.483 8 O -0.569 6.569 9 C -0.134 4.134 10 C -0.077 4.077 11 C -0.009 4.009 12 C -0.539 4.539 13 H 0.019 0.981 14 C -0.004 4.004 15 N -0.957 5.957 16 Si 0.961 3.039 17 H -0.264 1.264 18 H -0.286 1.286 19 H -0.237 1.237 20 C -0.087 4.087 21 C -0.117 4.117 22 C -0.122 4.122 23 C -0.126 4.126 24 C -0.121 4.121 25 C -0.128 4.128 26 H 0.037 0.963 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.045 0.955 31 H 0.057 0.943 32 H 0.084 0.916 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.411 0.589 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.037 0.963 40 H 0.035 0.965 41 H 0.028 0.972 42 H 0.028 0.972 43 H 0.266 0.734 44 H 0.132 0.868 45 H 0.141 0.859 46 H 0.141 0.859 47 H 0.140 0.860 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.756 -5.237 -33.175 33.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.150 4.150 3 C -0.166 4.166 4 C 0.135 3.865 5 C -0.213 4.213 6 N -0.367 5.367 7 C 0.305 3.695 8 O -0.448 6.448 9 C -0.174 4.174 10 C -0.115 4.115 11 C -0.047 4.047 12 C -0.577 4.577 13 H 0.038 0.962 14 C -0.199 4.199 15 N -0.598 5.598 16 Si 0.783 3.217 17 H -0.189 1.189 18 H -0.212 1.212 19 H -0.160 1.160 20 C -0.087 4.087 21 C -0.135 4.135 22 C -0.140 4.140 23 C -0.144 4.144 24 C -0.139 4.139 25 C -0.146 4.146 26 H 0.056 0.944 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.103 0.897 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.249 0.751 37 H 0.129 0.871 38 H 0.132 0.868 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.047 0.953 42 H 0.046 0.954 43 H 0.075 0.925 44 H 0.149 0.851 45 H 0.159 0.841 46 H 0.159 0.841 47 H 0.158 0.842 48 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.258 -4.558 -32.866 33.340 hybrid contribution 0.267 -0.284 0.951 1.028 sum 3.525 -4.843 -31.914 32.471 Atomic orbital electron populations 1.21748 0.95642 1.01836 1.01548 1.21406 0.95941 0.96047 1.01636 1.22042 0.93638 0.98099 1.02821 1.19066 0.93660 0.90636 0.83126 1.22153 1.01144 0.95244 1.02804 1.46159 1.53989 1.31982 1.04568 1.20958 0.79227 0.84650 0.84661 1.90639 1.39006 1.29438 1.85713 1.21736 1.03706 1.00561 0.91371 1.21001 0.99246 0.98417 0.92884 1.19548 0.96546 0.96110 0.92453 1.21560 1.31571 1.12338 0.92194 0.96210 1.26193 0.97548 1.01448 0.94747 1.70106 1.47952 1.43166 0.98566 0.85502 0.78782 0.78550 0.78838 1.18889 1.21216 1.15967 1.19721 0.95704 0.99314 0.93966 1.21215 0.99957 1.00162 0.92185 1.21425 0.96721 0.97646 0.98179 1.21502 0.94952 0.98900 0.99066 1.21402 1.00596 0.99416 0.92462 1.21134 0.95660 0.98554 0.99229 0.94356 0.91616 0.92230 0.91015 0.93622 0.92413 0.89725 0.92649 0.92323 0.90747 0.75127 0.87079 0.86781 0.94450 0.94566 0.95332 0.95378 0.92519 0.85071 0.84134 0.84140 0.84216 0.85299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.91 71.98 0.71 -2.17 16 2 C -0.11 -2.26 5.47 30.59 0.17 -2.10 16 3 C -0.13 -2.77 3.54 30.59 0.11 -2.66 16 4 C 0.22 4.46 0.59 2.86 0.00 4.47 16 5 C -0.16 -3.51 8.38 71.98 0.60 -2.90 16 6 N -0.71 -15.01 3.93 -426.31 -1.67 -16.68 16 7 C 0.52 15.11 7.03 87.66 0.62 15.73 16 8 O -0.57 -21.52 12.25 -3.03 -0.04 -21.55 16 9 C -0.13 -3.87 5.70 29.85 0.17 -3.70 16 10 C -0.08 -3.23 4.44 30.59 0.14 -3.10 16 11 C -0.01 -0.44 4.04 29.85 0.12 -0.31 16 12 C -0.54 -32.65 9.66 25.60 0.25 -32.40 16 13 H 0.02 1.34 7.99 -2.91 -0.02 1.32 16 14 C 0.00 -0.21 5.47 84.66 0.46 0.25 16 15 N -0.96 -62.23 13.96 21.45 0.30 -61.93 16 16 Si 0.96 44.30 27.47 68.60 1.88 46.19 16 17 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 18 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 19 H -0.24 -9.75 6.54 99.48 0.65 -9.10 16 20 C -0.09 -1.40 4.12 -19.87 -0.08 -1.48 16 21 C -0.12 -1.67 8.17 22.27 0.18 -1.48 16 22 C -0.12 -1.42 10.05 22.27 0.22 -1.20 16 23 C -0.13 -1.39 10.05 22.27 0.22 -1.16 16 24 C -0.12 -1.44 10.05 22.27 0.22 -1.21 16 25 C -0.13 -1.81 8.96 22.27 0.20 -1.61 16 26 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.07 1.26 6.63 -2.39 -0.02 1.25 16 30 H 0.04 1.06 7.29 -2.39 -0.02 1.04 16 31 H 0.06 1.68 6.32 -2.39 -0.02 1.67 16 32 H 0.08 1.51 6.21 -2.39 -0.01 1.49 16 33 H 0.05 1.62 6.17 -2.39 -0.01 1.60 16 34 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.07 1.43 8.14 -2.39 -0.02 1.42 16 36 H 0.41 6.38 6.67 -92.71 -0.62 5.77 16 37 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 38 H 0.11 2.70 8.14 -2.38 -0.02 2.69 16 39 H 0.04 1.70 8.10 -2.39 -0.02 1.68 16 40 H 0.04 1.65 8.10 -2.39 -0.02 1.63 16 41 H 0.03 1.27 7.20 -2.39 -0.02 1.26 16 42 H 0.03 1.23 7.57 -2.39 -0.02 1.21 16 43 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 44 H 0.13 1.67 6.04 -2.92 -0.02 1.65 16 45 H 0.14 1.05 8.06 -2.91 -0.02 1.03 16 46 H 0.14 0.92 8.06 -2.91 -0.02 0.90 16 47 H 0.14 1.11 8.06 -2.91 -0.02 1.08 16 48 H 0.13 1.57 6.71 -2.91 -0.02 1.55 16 Total: -1.00 -76.07 374.48 5.05 -71.02 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: 0.26 Total: 20.01 kcal Atomic # 6 Polarization: -41.37 SS G_CDS: 4.32 Total: -37.05 kcal Atomic # 7 Polarization: -77.23 SS G_CDS: -1.38 Total: -78.61 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -0.04 Total: -21.55 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.88 Total: 46.19 kcal Total: -76.07 5.05 -71.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889479206.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.638 kcal (2) G-P(sol) polarization free energy of solvation -76.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds