Wall clock time and date at job start Tue Mar 31 2020 08:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47058 * 2 1 4 4 C 1.50697 * 109.47355 * 120.00046 * 2 1 3 5 5 C 1.38238 * 119.99842 * 120.00251 * 4 2 1 6 6 C 1.38236 * 119.99704 * 179.97438 * 5 4 2 7 7 C 1.38230 * 120.00017 * 0.02562 * 6 5 4 8 8 C 1.50705 * 119.99815 * 179.97438 * 7 6 5 9 9 H 1.09000 * 110.06773 * 19.74728 * 8 7 6 10 10 C 1.54000 * 109.91424 * 258.54552 * 8 7 6 11 11 C 1.54598 * 105.22213 * 239.37034 * 10 8 7 12 12 C 1.55092 * 102.84998 * 338.15300 * 11 10 8 13 13 N 1.47897 * 109.92016 * 140.95734 * 8 7 6 14 14 C 1.46906 * 110.99555 * 265.19587 * 13 8 7 15 15 C 1.53002 * 109.46812 * 189.99680 * 14 13 8 16 16 H 1.08998 * 109.46986 * 59.99795 * 15 14 13 17 17 O 1.42896 * 109.47086 * 300.00062 * 15 14 13 18 18 C 1.50700 * 109.47001 * 179.97438 * 15 14 13 19 19 H 1.08004 * 119.99943 * 0.02562 * 18 15 14 20 20 C 1.37873 * 119.99760 * 179.97438 * 18 15 14 21 21 N 1.31513 * 120.00369 * 0.02562 * 20 18 15 22 22 Si 1.86804 * 119.99848 * 180.02562 * 20 18 15 23 23 H 1.48499 * 109.47349 * 59.99894 * 22 20 18 24 24 H 1.48497 * 109.47220 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47164 * 300.00213 * 22 20 18 26 26 C 1.38232 * 120.00203 * 0.25180 * 7 6 5 27 27 C 1.38229 * 119.99914 * 359.49836 * 26 7 6 28 28 H 1.08997 * 109.46735 * 299.99612 * 1 2 3 29 29 H 1.08994 * 109.47075 * 59.99944 * 1 2 3 30 30 H 1.08994 * 109.46676 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47375 * 240.00482 * 2 1 3 32 32 H 1.09001 * 109.47255 * 180.02562 * 3 2 1 33 33 H 1.08994 * 109.47223 * 299.99966 * 3 2 1 34 34 H 1.08996 * 109.46952 * 60.00020 * 3 2 1 35 35 H 1.08001 * 119.99792 * 359.97438 * 5 4 2 36 36 H 1.08001 * 119.99955 * 179.97438 * 6 5 4 37 37 H 1.09002 * 110.31026 * 358.33789 * 10 8 7 38 38 H 1.09000 * 110.30915 * 120.40818 * 10 8 7 39 39 H 1.09003 * 110.72246 * 96.45403 * 11 10 8 40 40 H 1.09003 * 110.72391 * 219.72762 * 11 10 8 41 41 H 1.09003 * 110.59460 * 278.87433 * 12 11 10 42 42 H 1.08995 * 110.83386 * 155.84768 * 12 11 10 43 43 H 1.08992 * 109.47227 * 309.99424 * 14 13 8 44 44 H 1.09001 * 109.47017 * 69.99781 * 14 13 8 45 45 H 0.96696 * 114.00500 * 299.99409 * 17 15 14 46 46 H 0.97005 * 120.00059 * 179.97438 * 21 20 18 47 47 H 1.08003 * 119.99982 * 179.72993 * 26 7 6 48 48 H 1.08001 * 120.00092 * 180.25326 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.8272 -1.8343 1.1035 6 6 3.2885 -2.4856 2.2322 7 6 2.9545 -2.0134 3.4877 8 6 3.4569 -2.7238 4.7181 9 1 4.3183 -3.3428 4.4671 10 6 2.3376 -3.5988 5.3124 11 6 2.1273 -3.0682 6.7492 12 6 3.4707 -2.3557 7.0539 13 7 3.8309 -1.7357 5.7531 14 6 5.2667 -1.4305 5.6950 15 6 5.6631 -0.6073 6.9223 16 1 5.4490 -1.1771 7.8265 17 8 4.9173 0.6115 6.9396 18 6 7.1361 -0.2947 6.8631 19 1 7.7301 -0.6474 6.0329 20 6 7.7253 0.4426 7.8682 21 7 7.0020 0.8726 8.8789 22 14 9.5511 0.8308 7.7944 23 1 9.8429 1.6065 6.5623 24 1 9.9358 1.6296 8.9856 25 1 10.3261 -0.4359 7.7770 26 6 2.1550 -0.8929 3.6146 27 6 1.6980 -0.2385 2.4860 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 3.1300 1.4426 -0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 3.0878 -2.2034 0.1225 36 1 3.9091 -3.3639 2.1331 37 1 1.4224 -3.4890 4.7307 38 1 2.6468 -4.6437 5.3365 39 1 1.2993 -2.3600 6.7814 40 1 1.9592 -3.8914 7.4436 41 1 4.2277 -3.0785 7.3583 42 1 3.3393 -1.5922 7.8206 43 1 5.8356 -2.3601 5.6819 44 1 5.4807 -0.8607 4.7907 45 1 5.0590 1.1704 6.1633 46 1 7.4166 1.3910 9.5862 47 1 1.8905 -0.5265 4.5955 48 1 1.0767 0.6393 2.5851 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930106212.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:27:37 Heat of formation + Delta-G solvation = -56.520950 kcal Electronic energy + Delta-G solvation = -25285.283585 eV Core-core repulsion = 21917.283647 eV Total energy + Delta-G solvation = -3367.999939 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.00873 -39.60420 -37.48370 -36.08970 -34.24845 -33.06673 -31.84681 -31.68695 -29.48378 -28.35678 -27.94002 -26.29527 -24.13599 -23.71466 -23.03018 -21.41881 -21.13581 -20.59431 -19.05389 -17.69106 -16.83274 -16.69561 -16.50693 -16.17276 -15.87679 -15.66820 -15.40307 -15.04984 -14.71561 -14.42702 -14.40430 -14.20668 -13.94996 -13.81489 -13.54824 -13.25913 -13.18714 -12.96990 -12.81587 -12.67806 -12.64766 -12.34747 -12.14767 -12.08653 -12.02807 -11.93942 -11.85336 -11.61635 -11.42076 -11.31461 -10.97959 -10.70219 -10.09421 -9.69448 -9.28646 -9.27179 -8.14797 -6.40988 0.52440 0.63796 1.38555 1.40279 1.48512 2.36886 2.88324 3.10344 3.15834 3.70739 3.80754 3.85767 3.93275 4.05367 4.19396 4.23088 4.28950 4.31205 4.37659 4.40911 4.46214 4.56230 4.60165 4.66669 4.70571 4.79783 4.84399 4.87070 4.95992 4.98119 5.02568 5.04297 5.06342 5.14795 5.19234 5.25317 5.31916 5.32356 5.40246 5.42580 5.57272 5.66346 5.74368 5.80912 5.84700 5.99361 6.14036 6.22534 6.27379 6.71520 7.32521 7.57094 8.89266 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.014582 B = 0.003784 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.756789 B = 7397.323528 C = 8483.719941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.053 4.053 3 C -0.144 4.144 4 C -0.085 4.085 5 C -0.126 4.126 6 C -0.125 4.125 7 C -0.079 4.079 8 C 0.096 3.904 9 H 0.050 0.950 10 C -0.111 4.111 11 C -0.112 4.112 12 C 0.038 3.962 13 N -0.503 5.503 14 C 0.045 3.955 15 C 0.239 3.761 16 H 0.025 0.975 17 O -0.568 6.568 18 C -0.592 4.592 19 H 0.055 0.945 20 C 0.028 3.972 21 N -0.897 5.897 22 Si 0.959 3.041 23 H -0.268 1.268 24 H -0.283 1.283 25 H -0.268 1.268 26 C -0.095 4.095 27 C -0.125 4.125 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.085 0.915 32 H 0.046 0.954 33 H 0.072 0.928 34 H 0.051 0.949 35 H 0.138 0.862 36 H 0.127 0.873 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.090 0.910 41 H 0.031 0.969 42 H 0.059 0.941 43 H 0.024 0.976 44 H 0.057 0.943 45 H 0.351 0.649 46 H 0.262 0.738 47 H 0.113 0.887 48 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.955 -6.662 -16.681 22.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.072 4.072 3 C -0.201 4.201 4 C -0.085 4.085 5 C -0.144 4.144 6 C -0.143 4.143 7 C -0.079 4.079 8 C -0.012 4.012 9 H 0.068 0.932 10 C -0.149 4.149 11 C -0.150 4.150 12 C -0.090 4.090 13 N -0.226 5.226 14 C -0.083 4.083 15 C 0.181 3.819 16 H 0.043 0.957 17 O -0.371 6.371 18 C -0.630 4.630 19 H 0.073 0.927 20 C -0.175 4.175 21 N -0.534 5.534 22 Si 0.783 3.217 23 H -0.193 1.193 24 H -0.208 1.208 25 H -0.193 1.193 26 C -0.113 4.113 27 C -0.143 4.143 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.104 0.896 32 H 0.065 0.935 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.156 0.844 36 H 0.145 0.855 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.091 0.909 40 H 0.108 0.892 41 H 0.050 0.950 42 H 0.077 0.923 43 H 0.042 0.958 44 H 0.076 0.924 45 H 0.195 0.805 46 H 0.071 0.929 47 H 0.131 0.869 48 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -13.438 -6.327 -16.003 21.834 hybrid contribution 2.035 -0.150 0.178 2.048 sum -11.404 -6.477 -15.825 20.553 Atomic orbital electron populations 1.21828 0.93629 1.01963 1.02350 1.20146 0.96486 0.95877 0.94663 1.21856 1.00723 0.95214 1.02342 1.20086 0.97620 0.95809 0.95023 1.21198 0.98513 0.95903 0.98779 1.21158 1.00619 1.00673 0.91900 1.19745 0.98006 0.96520 0.93654 1.21405 0.97334 0.91544 0.90913 0.93181 1.22403 0.97954 0.98733 0.95791 1.22486 0.96003 0.99934 0.96550 1.23136 0.96886 0.96590 0.92368 1.64613 1.16538 1.38888 1.02577 1.22781 0.87203 0.98318 1.00039 1.19178 0.88696 0.82564 0.91462 0.95725 1.86483 1.69891 1.34151 1.46577 1.22017 0.95995 1.36764 1.08255 0.92682 1.25869 1.02423 0.94721 0.94449 1.70207 1.37377 1.35300 1.10519 0.85632 0.79803 0.78490 0.77769 1.19300 1.20788 1.19342 1.20974 0.96840 0.94914 0.98605 1.21097 1.00972 1.00208 0.92035 0.92858 0.91081 0.92757 0.89647 0.93510 0.90920 0.92976 0.84424 0.85467 0.90222 0.89899 0.90880 0.89166 0.95020 0.92259 0.95819 0.92432 0.80538 0.92945 0.86936 0.85717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.01 71.98 0.65 -1.41 16 2 C -0.05 -0.90 3.09 -11.54 -0.04 -0.94 16 3 C -0.14 -2.44 9.01 71.98 0.65 -1.79 16 4 C -0.09 -1.91 4.78 -19.87 -0.09 -2.01 16 5 C -0.13 -2.83 9.67 22.27 0.22 -2.61 16 6 C -0.13 -3.15 9.68 22.27 0.22 -2.94 16 7 C -0.08 -2.27 4.74 -19.87 -0.09 -2.36 16 8 C 0.10 2.91 2.66 44.32 0.12 3.02 16 9 H 0.05 1.54 7.46 -2.39 -0.02 1.52 16 10 C -0.11 -2.70 6.54 31.48 0.21 -2.49 16 11 C -0.11 -2.93 7.08 31.85 0.23 -2.71 16 12 C 0.04 1.36 5.11 86.70 0.44 1.80 16 13 N -0.50 -18.61 4.14 -862.09 -3.57 -22.18 16 14 C 0.05 1.96 4.63 86.30 0.40 2.36 16 15 C 0.24 12.56 2.43 29.85 0.07 12.63 16 16 H 0.02 1.45 6.79 -2.39 -0.02 1.43 16 17 O -0.57 -30.77 12.60 -148.98 -1.88 -32.65 16 18 C -0.59 -33.41 8.76 25.60 0.22 -33.19 16 19 H 0.05 3.01 7.74 -2.91 -0.02 2.99 16 20 C 0.03 1.60 5.40 84.65 0.46 2.05 16 21 N -0.90 -54.43 12.84 21.45 0.28 -54.15 16 22 Si 0.96 44.03 29.54 68.60 2.03 46.05 16 23 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 24 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 25 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 26 C -0.09 -2.81 9.33 22.27 0.21 -2.60 16 27 C -0.13 -3.19 8.71 22.27 0.19 -2.99 16 28 H 0.05 0.83 7.39 -2.39 -0.02 0.81 16 29 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.09 1.25 7.88 -2.38 -0.02 1.24 16 32 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.05 0.94 7.39 -2.39 -0.02 0.92 16 35 H 0.14 2.39 7.95 -2.91 -0.02 2.36 16 36 H 0.13 2.79 8.05 -2.91 -0.02 2.77 16 37 H 0.08 1.81 7.68 -2.39 -0.02 1.79 16 38 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.03 1.16 8.00 -2.39 -0.02 1.14 16 42 H 0.06 2.46 7.65 -2.39 -0.02 2.44 16 43 H 0.02 1.02 7.81 -2.39 -0.02 1.01 16 44 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 45 H 0.35 17.45 9.04 -74.06 -0.67 16.79 16 46 H 0.26 15.02 8.31 -92.70 -0.77 14.25 16 47 H 0.11 3.68 7.71 -2.91 -0.02 3.65 16 48 H 0.12 2.85 7.10 -2.91 -0.02 2.83 16 Total: -1.00 -65.26 380.14 1.16 -64.10 By element: Atomic # 1 Polarization: 34.74 SS G_CDS: 0.25 Total: 34.99 kcal Atomic # 6 Polarization: -40.22 SS G_CDS: 4.05 Total: -36.17 kcal Atomic # 7 Polarization: -73.04 SS G_CDS: -3.29 Total: -76.33 kcal Atomic # 8 Polarization: -30.77 SS G_CDS: -1.88 Total: -32.65 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Total: -65.26 1.16 -64.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930106212.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.584 kcal (2) G-P(sol) polarization free energy of solvation -65.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds