Wall clock time and date at job start Tue Mar 31 2020 08:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50702 * 109.47196 * 2 1 4 4 C 1.38238 * 120.00357 * 89.99219 * 3 2 1 5 5 C 1.38232 * 120.00030 * 179.97438 * 4 3 2 6 6 C 1.38229 * 120.00097 * 0.02562 * 5 4 3 7 7 C 1.50701 * 120.00067 * 179.97438 * 6 5 4 8 8 C 1.53122 * 109.52572 * 119.99797 * 7 6 5 9 9 C 1.53038 * 109.27645 * 177.55973 * 8 7 6 10 10 N 1.46846 * 109.52305 * 300.81755 * 9 8 7 11 11 C 1.46896 * 111.00009 * 185.83846 * 10 9 8 12 12 C 1.52996 * 109.47256 * 170.00096 * 11 10 9 13 13 H 1.09004 * 109.47066 * 60.00378 * 12 11 10 14 14 O 1.42903 * 109.47446 * 300.00254 * 12 11 10 15 15 C 1.50702 * 109.47159 * 180.02562 * 12 11 10 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 12 11 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 12 11 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 12 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 12 20 20 H 1.48496 * 109.47341 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46983 * 120.00379 * 19 17 15 22 22 H 1.48503 * 109.47491 * 240.00192 * 19 17 15 23 23 C 1.46847 * 111.19486 * 61.74774 * 10 9 8 24 24 C 1.53037 * 109.52174 * 298.25332 * 23 10 9 25 25 C 1.38233 * 120.00106 * 0.25146 * 6 5 4 26 26 C 1.38230 * 119.99838 * 359.49598 * 25 6 5 27 27 H 1.09002 * 109.46887 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47025 * 300.00722 * 1 2 3 29 29 H 1.09005 * 109.46933 * 60.00309 * 1 2 3 30 30 H 1.08993 * 109.47508 * 239.99839 * 2 1 3 31 31 H 1.08997 * 109.47031 * 119.99365 * 2 1 3 32 32 H 1.07997 * 119.99743 * 0.02562 * 4 3 2 33 33 H 1.07999 * 119.99979 * 180.02562 * 5 4 3 34 34 H 1.09001 * 109.52232 * 359.87289 * 7 6 5 35 35 H 1.08996 * 109.49978 * 57.61790 * 8 7 6 36 36 H 1.09004 * 109.50327 * 297.50054 * 8 7 6 37 37 H 1.09005 * 109.45785 * 180.80663 * 9 8 7 38 38 H 1.09004 * 109.45627 * 60.83236 * 9 8 7 39 39 H 1.09004 * 109.46774 * 50.00295 * 11 10 9 40 40 H 1.09000 * 109.47723 * 290.00683 * 11 10 9 41 41 H 0.96697 * 113.99557 * 300.00558 * 14 12 11 42 42 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 43 43 H 1.08997 * 109.46766 * 58.27139 * 23 10 9 44 44 H 1.09002 * 109.46309 * 178.24075 * 23 10 9 45 45 H 1.08995 * 109.50368 * 299.23725 * 24 23 10 46 46 H 1.09006 * 109.50012 * 179.12624 * 24 23 10 47 47 H 1.08000 * 120.00461 * 179.72779 * 25 6 5 48 48 H 1.08004 * 120.00386 * 180.24770 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2627 2.0726 1.1971 5 6 2.7240 3.3757 1.1971 6 6 2.9545 4.0272 -0.0001 7 6 3.4569 5.4480 -0.0001 8 6 4.8059 5.5138 -0.7215 9 6 5.2816 6.9676 -0.7718 10 7 4.2876 7.7849 -1.4791 11 6 4.7737 9.1583 -1.6680 12 6 3.8337 9.9061 -2.6156 13 1 2.8313 9.9311 -2.1882 14 8 3.7970 9.2361 -3.8773 15 6 4.3327 11.3148 -2.8098 16 1 5.2307 11.6437 -2.3079 17 6 3.6462 12.1820 -3.6332 18 7 2.5529 11.7814 -4.2446 19 14 4.2690 13.9257 -3.8800 20 1 5.5087 14.1254 -3.0873 21 1 4.5609 14.1480 -5.3190 22 1 3.2328 14.8898 -3.4304 23 6 2.9969 7.7752 -0.7789 24 6 2.4530 6.3456 -0.7289 25 6 2.7188 3.3774 -1.1972 26 6 2.2625 2.0726 -1.1972 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 2.0830 1.5634 2.1324 33 1 2.9043 3.8848 2.1323 34 1 3.5760 5.7923 1.0272 35 1 4.6948 5.1320 -1.7364 36 1 5.5365 4.9103 -0.1829 37 1 6.2351 7.0197 -1.2975 38 1 5.4055 7.3443 0.2435 39 1 5.7761 9.1333 -2.0954 40 1 4.8017 9.6694 -0.7057 41 1 4.6566 9.1766 -4.3161 42 1 2.0697 12.3916 -4.8236 43 1 3.1316 8.1483 0.2363 44 1 2.2909 8.4140 -1.3097 45 1 2.3049 5.9769 -1.7438 46 1 1.5024 6.3364 -0.1955 47 1 2.8947 3.8879 -2.1325 48 1 2.0821 1.5635 -2.1325 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931329975.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:02:37 Heat of formation + Delta-G solvation = -47.434771 kcal Electronic energy + Delta-G solvation = -24612.664607 eV Core-core repulsion = 21245.058675 eV Total energy + Delta-G solvation = -3367.605933 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.98816 -38.41750 -35.90569 -34.56568 -32.62820 -32.02800 -30.97208 -30.56725 -29.39333 -27.70145 -25.28420 -23.84905 -22.94230 -22.87127 -22.28754 -20.72272 -20.03537 -19.19832 -17.03152 -16.44178 -15.68145 -15.41550 -14.81387 -14.75269 -14.58518 -14.25911 -14.11019 -13.86733 -13.81540 -13.62523 -13.36676 -13.23910 -13.11266 -12.66446 -12.45087 -12.22767 -11.97959 -11.69601 -11.50318 -11.26080 -11.09663 -11.02536 -10.95353 -10.89991 -10.76054 -10.71701 -10.46542 -10.16962 -10.12030 -9.88417 -8.94934 -8.92582 -8.54736 -8.48279 -8.05143 -7.56989 -5.98083 -4.16079 1.29529 1.37338 3.27666 3.35931 3.39104 3.69492 4.34579 4.51906 4.56841 4.64109 4.77394 4.87847 4.96250 5.10798 5.12486 5.16823 5.29692 5.30295 5.39365 5.44003 5.47847 5.52802 5.63046 5.67341 5.73809 5.84396 5.89154 5.90390 5.94060 5.99891 6.03950 6.09344 6.14095 6.21695 6.33107 6.34148 6.42190 6.50410 6.52640 6.55096 6.64128 6.74938 6.86293 6.98639 7.62236 7.70361 7.82413 7.92887 8.23962 8.88184 9.49673 9.66398 11.06008 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.033254 B = 0.002521 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.795622 B =11103.133439 C =11464.013481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.083 4.083 3 C -0.093 4.093 4 C -0.119 4.119 5 C -0.118 4.118 6 C -0.071 4.071 7 C -0.049 4.049 8 C -0.104 4.104 9 C 0.054 3.946 10 N -0.526 5.526 11 C 0.031 3.969 12 C 0.237 3.763 13 H 0.054 0.946 14 O -0.553 6.553 15 C -0.573 4.573 16 H 0.054 0.946 17 C 0.079 3.921 18 N -0.858 5.858 19 Si 0.888 3.112 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.283 1.283 23 C 0.057 3.943 24 C -0.104 4.104 25 C -0.108 4.108 26 C -0.116 4.116 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.023 0.977 39 H 0.062 0.938 40 H 0.024 0.976 41 H 0.342 0.658 42 H 0.259 0.741 43 H 0.022 0.978 44 H 0.086 0.914 45 H 0.074 0.926 46 H 0.061 0.939 47 H 0.125 0.875 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.212 -21.079 10.201 23.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C -0.093 4.093 4 C -0.137 4.137 5 C -0.136 4.136 6 C -0.071 4.071 7 C -0.068 4.068 8 C -0.141 4.141 9 C -0.074 4.074 10 N -0.250 5.250 11 C -0.096 4.096 12 C 0.179 3.821 13 H 0.072 0.928 14 O -0.355 6.355 15 C -0.612 4.612 16 H 0.073 0.927 17 C -0.127 4.127 18 N -0.494 5.494 19 Si 0.715 3.285 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.071 4.071 24 C -0.142 4.142 25 C -0.125 4.125 26 C -0.134 4.134 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.134 0.866 33 H 0.136 0.864 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.041 0.959 39 H 0.081 0.919 40 H 0.042 0.958 41 H 0.185 0.815 42 H 0.069 0.931 43 H 0.040 0.960 44 H 0.104 0.896 45 H 0.093 0.907 46 H 0.080 0.920 47 H 0.143 0.857 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.084 -21.287 9.779 23.450 hybrid contribution 1.077 1.545 0.652 1.993 sum -0.007 -19.741 10.431 22.328 Atomic orbital electron populations 1.21752 0.94830 1.01510 1.02325 1.20516 0.96123 0.92887 1.02554 1.19844 0.99992 0.96190 0.93301 1.20941 1.00508 0.94940 0.97296 1.21044 1.00177 0.94794 0.97543 1.19929 0.98307 0.95814 0.93024 1.20258 0.95756 0.90811 0.99976 1.21623 0.95266 0.96256 1.00986 1.22072 0.95882 0.93288 0.96164 1.61935 1.02221 1.12811 1.48051 1.23062 1.00378 0.86582 0.99607 1.19326 0.94122 0.88003 0.80699 0.92835 1.86557 1.33301 1.80035 1.35602 1.21708 1.11687 0.97545 1.30243 0.92748 1.25027 0.94473 0.98148 0.95037 1.70096 1.16045 1.34945 1.28307 0.86636 0.78926 0.84914 0.77993 1.19783 1.20873 1.20936 1.22081 0.92672 0.96436 0.95958 1.21639 0.96995 0.94579 1.00972 1.21083 0.98872 0.94455 0.98137 1.21012 1.00099 0.94962 0.97365 0.92569 0.92610 0.92465 0.91207 0.91327 0.86553 0.86395 0.91127 0.90873 0.92174 0.91182 0.95916 0.91943 0.95751 0.81514 0.93090 0.95973 0.89560 0.90740 0.92026 0.85669 0.86347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.90 37.16 0.37 -0.67 16 2 C -0.08 -0.63 6.06 -27.88 -0.17 -0.80 16 3 C -0.09 -0.92 5.13 -104.62 -0.54 -1.46 16 4 C -0.12 -1.19 9.70 -39.58 -0.38 -1.57 16 5 C -0.12 -1.28 9.67 -39.59 -0.38 -1.66 16 6 C -0.07 -0.84 4.79 -104.63 -0.50 -1.34 16 7 C -0.05 -0.62 2.43 -91.65 -0.22 -0.85 16 8 C -0.10 -1.34 5.23 -26.65 -0.14 -1.48 16 9 C 0.05 0.81 5.46 -3.83 -0.02 0.79 16 10 N -0.53 -9.57 4.52 -234.67 -1.06 -10.63 16 11 C 0.03 0.65 4.56 -3.83 -0.02 0.63 16 12 C 0.24 6.01 2.70 -27.88 -0.08 5.93 16 13 H 0.05 1.49 6.43 -51.93 -0.33 1.16 16 14 O -0.55 -14.50 12.59 -35.23 -0.44 -14.94 16 15 C -0.57 -15.79 8.76 -34.44 -0.30 -16.09 16 16 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 17 C 0.08 2.23 5.40 -17.82 -0.10 2.13 16 18 N -0.86 -25.51 12.83 55.43 0.71 -24.79 16 19 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 20 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 C 0.06 0.98 5.29 -3.83 -0.02 0.96 16 24 C -0.10 -1.50 5.22 -26.65 -0.14 -1.64 16 25 C -0.11 -1.27 8.66 -39.59 -0.34 -1.61 16 26 C -0.12 -1.23 9.70 -39.58 -0.38 -1.62 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 31 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 32 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 33 H 0.12 1.12 7.95 -52.49 -0.42 0.70 16 34 H 0.07 0.87 7.88 -51.93 -0.41 0.46 16 35 H 0.07 1.00 7.34 -51.93 -0.38 0.61 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 1.02 8.02 -51.93 -0.42 0.60 16 38 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.06 1.27 7.99 -51.93 -0.41 0.85 16 40 H 0.02 0.51 8.12 -51.93 -0.42 0.09 16 41 H 0.34 8.09 9.04 45.56 0.41 8.50 16 42 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 43 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.09 1.72 6.21 -51.93 -0.32 1.39 16 45 H 0.07 1.15 7.28 -51.93 -0.38 0.77 16 46 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.13 1.48 7.06 -52.49 -0.37 1.11 16 48 H 0.12 1.07 8.06 -52.48 -0.42 0.64 16 LS Contribution 378.12 15.07 5.70 5.70 Total: -1.00 -30.38 378.12 -11.12 -41.51 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -7.64 Total: 7.30 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: -3.37 Total: -20.35 kcal Atomic # 7 Polarization: -35.07 SS G_CDS: -0.35 Total: -35.42 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: -0.44 Total: -14.94 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.38 -11.12 -41.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931329975.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.929 kcal (2) G-P(sol) polarization free energy of solvation -30.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds