Wall clock time and date at job start Tue Mar 31 2020 08:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50702 * 109.47196 * 2 1 4 4 C 1.38238 * 120.00357 * 89.99219 * 3 2 1 5 5 C 1.38232 * 120.00030 * 179.97438 * 4 3 2 6 6 C 1.38229 * 120.00097 * 0.02562 * 5 4 3 7 7 C 1.50701 * 120.00067 * 179.97438 * 6 5 4 8 8 C 1.53122 * 109.52572 * 119.99797 * 7 6 5 9 9 C 1.53038 * 109.27645 * 177.55973 * 8 7 6 10 10 N 1.46846 * 109.52305 * 300.81755 * 9 8 7 11 11 C 1.46896 * 111.00009 * 185.83846 * 10 9 8 12 12 C 1.52996 * 109.47256 * 170.00096 * 11 10 9 13 13 H 1.09004 * 109.47066 * 60.00378 * 12 11 10 14 14 O 1.42903 * 109.47446 * 300.00254 * 12 11 10 15 15 C 1.50702 * 109.47159 * 180.02562 * 12 11 10 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 12 11 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 12 11 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 12 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 12 20 20 H 1.48496 * 109.47341 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46983 * 120.00379 * 19 17 15 22 22 H 1.48503 * 109.47491 * 240.00192 * 19 17 15 23 23 C 1.46847 * 111.19486 * 61.74774 * 10 9 8 24 24 C 1.53037 * 109.52174 * 298.25332 * 23 10 9 25 25 C 1.38233 * 120.00106 * 0.25146 * 6 5 4 26 26 C 1.38230 * 119.99838 * 359.49598 * 25 6 5 27 27 H 1.09002 * 109.46887 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47025 * 300.00722 * 1 2 3 29 29 H 1.09005 * 109.46933 * 60.00309 * 1 2 3 30 30 H 1.08993 * 109.47508 * 239.99839 * 2 1 3 31 31 H 1.08997 * 109.47031 * 119.99365 * 2 1 3 32 32 H 1.07997 * 119.99743 * 0.02562 * 4 3 2 33 33 H 1.07999 * 119.99979 * 180.02562 * 5 4 3 34 34 H 1.09001 * 109.52232 * 359.87289 * 7 6 5 35 35 H 1.08996 * 109.49978 * 57.61790 * 8 7 6 36 36 H 1.09004 * 109.50327 * 297.50054 * 8 7 6 37 37 H 1.09005 * 109.45785 * 180.80663 * 9 8 7 38 38 H 1.09004 * 109.45627 * 60.83236 * 9 8 7 39 39 H 1.09004 * 109.46774 * 50.00295 * 11 10 9 40 40 H 1.09000 * 109.47723 * 290.00683 * 11 10 9 41 41 H 0.96697 * 113.99557 * 300.00558 * 14 12 11 42 42 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 43 43 H 1.08997 * 109.46766 * 58.27139 * 23 10 9 44 44 H 1.09002 * 109.46309 * 178.24075 * 23 10 9 45 45 H 1.08995 * 109.50368 * 299.23725 * 24 23 10 46 46 H 1.09006 * 109.50012 * 179.12624 * 24 23 10 47 47 H 1.08000 * 120.00461 * 179.72779 * 25 6 5 48 48 H 1.08004 * 120.00386 * 180.24770 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2627 2.0726 1.1971 5 6 2.7240 3.3757 1.1971 6 6 2.9545 4.0272 -0.0001 7 6 3.4569 5.4480 -0.0001 8 6 4.8059 5.5138 -0.7215 9 6 5.2816 6.9676 -0.7718 10 7 4.2876 7.7849 -1.4791 11 6 4.7737 9.1583 -1.6680 12 6 3.8337 9.9061 -2.6156 13 1 2.8313 9.9311 -2.1882 14 8 3.7970 9.2361 -3.8773 15 6 4.3327 11.3148 -2.8098 16 1 5.2307 11.6437 -2.3079 17 6 3.6462 12.1820 -3.6332 18 7 2.5529 11.7814 -4.2446 19 14 4.2690 13.9257 -3.8800 20 1 5.5087 14.1254 -3.0873 21 1 4.5609 14.1480 -5.3190 22 1 3.2328 14.8898 -3.4304 23 6 2.9969 7.7752 -0.7789 24 6 2.4530 6.3456 -0.7289 25 6 2.7188 3.3774 -1.1972 26 6 2.2625 2.0726 -1.1972 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 2.0830 1.5634 2.1324 33 1 2.9043 3.8848 2.1323 34 1 3.5760 5.7923 1.0272 35 1 4.6948 5.1320 -1.7364 36 1 5.5365 4.9103 -0.1829 37 1 6.2351 7.0197 -1.2975 38 1 5.4055 7.3443 0.2435 39 1 5.7761 9.1333 -2.0954 40 1 4.8017 9.6694 -0.7057 41 1 4.6566 9.1766 -4.3161 42 1 2.0697 12.3916 -4.8236 43 1 3.1316 8.1483 0.2363 44 1 2.2909 8.4140 -1.3097 45 1 2.3049 5.9769 -1.7438 46 1 1.5024 6.3364 -0.1955 47 1 2.8947 3.8879 -2.1325 48 1 2.0821 1.5635 -2.1325 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931329975.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:02:37 Heat of formation + Delta-G solvation = -65.246185 kcal Electronic energy + Delta-G solvation = -24613.436968 eV Core-core repulsion = 21245.058675 eV Total energy + Delta-G solvation = -3368.378293 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.94255 -39.62548 -37.59255 -35.72844 -34.21872 -33.67263 -31.80908 -31.77080 -30.65223 -29.21053 -26.80294 -25.12178 -24.20690 -23.68260 -23.38693 -22.00538 -21.37719 -20.33552 -19.07177 -17.37704 -16.69922 -16.63972 -16.44004 -16.33209 -16.08228 -15.67181 -15.37641 -15.04877 -14.87062 -14.62008 -14.50757 -14.35274 -14.22669 -13.86475 -13.74354 -13.29022 -13.15174 -13.06606 -12.84481 -12.74844 -12.60841 -12.37926 -12.19396 -12.13503 -12.03553 -11.90467 -11.73175 -11.51011 -11.43491 -11.13412 -10.89644 -10.67420 -10.06729 -9.76054 -9.32517 -9.06779 -8.12866 -6.38764 0.47614 0.56175 1.39314 1.40448 1.52690 2.38334 2.87507 3.06732 3.13660 3.68664 3.79188 3.96423 3.97478 4.06005 4.20577 4.25740 4.29489 4.32896 4.39972 4.43393 4.52370 4.54694 4.58487 4.61561 4.64863 4.72894 4.75250 4.80843 4.88104 4.96719 5.02693 5.05868 5.09579 5.10754 5.11407 5.20723 5.25897 5.28414 5.40997 5.43186 5.60402 5.61461 5.77101 5.78496 5.83041 6.03851 6.18780 6.25032 6.37589 6.75270 7.35410 7.64010 8.91755 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.033254 B = 0.002521 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.795622 B =11103.133439 C =11464.013481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.082 4.082 3 C -0.094 4.094 4 C -0.123 4.123 5 C -0.122 4.122 6 C -0.084 4.084 7 C -0.040 4.040 8 C -0.096 4.096 9 C 0.054 3.946 10 N -0.537 5.537 11 C 0.049 3.951 12 C 0.237 3.763 13 H 0.019 0.981 14 O -0.569 6.569 15 C -0.587 4.587 16 H 0.058 0.942 17 C 0.024 3.976 18 N -0.899 5.899 19 Si 0.961 3.039 20 H -0.263 1.263 21 H -0.279 1.279 22 H -0.280 1.280 23 C 0.059 3.941 24 C -0.095 4.095 25 C -0.121 4.121 26 C -0.126 4.126 27 H 0.070 0.930 28 H 0.052 0.948 29 H 0.047 0.953 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.138 0.862 33 H 0.132 0.868 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.031 0.969 39 H 0.069 0.931 40 H 0.022 0.978 41 H 0.352 0.648 42 H 0.261 0.739 43 H 0.029 0.971 44 H 0.049 0.951 45 H 0.059 0.941 46 H 0.070 0.930 47 H 0.116 0.884 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.800 -22.381 11.630 25.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 C -0.094 4.094 4 C -0.141 4.141 5 C -0.140 4.140 6 C -0.084 4.084 7 C -0.059 4.059 8 C -0.134 4.134 9 C -0.074 4.074 10 N -0.262 5.262 11 C -0.079 4.079 12 C 0.179 3.821 13 H 0.037 0.963 14 O -0.372 6.372 15 C -0.625 4.625 16 H 0.077 0.923 17 C -0.178 4.178 18 N -0.537 5.537 19 Si 0.786 3.214 20 H -0.187 1.187 21 H -0.204 1.204 22 H -0.205 1.205 23 C -0.069 4.069 24 C -0.133 4.133 25 C -0.139 4.139 26 C -0.144 4.144 27 H 0.089 0.911 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.156 0.844 33 H 0.150 0.850 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.049 0.951 39 H 0.088 0.912 40 H 0.040 0.960 41 H 0.196 0.804 42 H 0.070 0.930 43 H 0.047 0.953 44 H 0.068 0.932 45 H 0.078 0.922 46 H 0.088 0.912 47 H 0.134 0.866 48 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.056 -22.602 11.219 25.233 hybrid contribution 0.723 1.870 0.212 2.016 sum 0.667 -20.733 11.431 23.684 Atomic orbital electron populations 1.21741 0.94490 1.02326 1.01734 1.20567 0.96308 0.91524 1.03561 1.20164 0.99032 0.97277 0.92975 1.21239 0.99804 0.94742 0.98269 1.21254 0.99851 0.95285 0.97632 1.19850 0.99562 0.95367 0.93579 1.20140 0.94801 0.91035 0.99879 1.21571 0.95998 0.94904 1.00905 1.22165 0.95182 0.93816 0.96191 1.61865 1.03283 1.11491 1.49582 1.22665 0.99285 0.87781 0.98204 1.19184 0.93404 0.88266 0.81254 0.96288 1.86504 1.34298 1.80081 1.36348 1.22092 1.11696 0.98727 1.30033 0.92329 1.25915 0.94541 1.02613 0.94727 1.70239 1.17497 1.36656 1.29270 0.85494 0.78579 0.79368 0.78007 1.18709 1.20436 1.20528 1.22015 0.91725 0.97713 0.95451 1.21541 0.98016 0.93043 1.00701 1.21119 0.99758 0.95167 0.97904 1.21209 1.00081 0.94685 0.98426 0.91087 0.92905 0.93357 0.90535 0.90029 0.84430 0.84968 0.90197 0.91823 0.90017 0.90583 0.95079 0.91209 0.95956 0.80436 0.93038 0.95301 0.93222 0.92217 0.91176 0.86645 0.85279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.90 71.98 0.71 -1.06 16 2 C -0.08 -1.05 6.06 29.85 0.18 -0.87 16 3 C -0.09 -1.68 5.13 -19.86 -0.10 -1.79 16 4 C -0.12 -2.16 9.70 22.27 0.22 -1.94 16 5 C -0.12 -2.40 9.67 22.27 0.22 -2.18 16 6 C -0.08 -1.89 4.79 -19.87 -0.10 -1.98 16 7 C -0.04 -0.96 2.43 -11.46 -0.03 -0.99 16 8 C -0.10 -2.35 5.23 30.65 0.16 -2.19 16 9 C 0.05 1.55 5.46 86.33 0.47 2.02 16 10 N -0.54 -19.71 4.52 -896.36 -4.05 -23.76 16 11 C 0.05 2.05 4.56 86.30 0.39 2.44 16 12 C 0.24 12.42 2.70 29.85 0.08 12.50 16 13 H 0.02 1.14 6.43 -2.38 -0.02 1.12 16 14 O -0.57 -30.78 12.59 -148.98 -1.87 -32.65 16 15 C -0.59 -32.75 8.76 25.60 0.22 -32.53 16 16 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 17 C 0.02 1.38 5.40 84.66 0.46 1.84 16 18 N -0.90 -54.72 12.83 21.45 0.28 -54.45 16 19 Si 0.96 43.83 29.54 68.60 2.03 45.86 16 20 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 21 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 22 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 23 C 0.06 2.10 5.29 86.33 0.46 2.55 16 24 C -0.10 -2.78 5.22 30.65 0.16 -2.62 16 25 C -0.12 -2.81 8.66 22.27 0.19 -2.62 16 26 C -0.13 -2.55 9.70 22.27 0.22 -2.33 16 27 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.08 0.88 8.09 -2.39 -0.02 0.86 16 31 H 0.08 0.85 8.09 -2.39 -0.02 0.83 16 32 H 0.14 1.79 8.06 -2.91 -0.02 1.76 16 33 H 0.13 2.15 7.95 -2.91 -0.02 2.13 16 34 H 0.08 1.79 7.88 -2.39 -0.02 1.77 16 35 H 0.06 1.69 7.34 -2.39 -0.02 1.67 16 36 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.08 2.09 8.02 -2.38 -0.02 2.07 16 38 H 0.03 0.85 8.14 -2.38 -0.02 0.83 16 39 H 0.07 2.81 7.99 -2.38 -0.02 2.79 16 40 H 0.02 0.94 8.12 -2.39 -0.02 0.92 16 41 H 0.35 17.02 9.04 -74.06 -0.67 16.35 16 42 H 0.26 14.95 8.31 -92.70 -0.77 14.18 16 43 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.05 2.11 6.21 -2.39 -0.01 2.10 16 45 H 0.06 1.91 7.28 -2.39 -0.02 1.89 16 46 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 47 H 0.12 2.81 7.06 -2.91 -0.02 2.79 16 48 H 0.13 2.21 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -65.77 378.12 0.54 -65.24 By element: Atomic # 1 Polarization: 31.26 SS G_CDS: 0.25 Total: 31.51 kcal Atomic # 6 Polarization: -35.65 SS G_CDS: 3.91 Total: -31.74 kcal Atomic # 7 Polarization: -74.43 SS G_CDS: -3.78 Total: -78.21 kcal Atomic # 8 Polarization: -30.78 SS G_CDS: -1.87 Total: -32.65 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -65.77 0.54 -65.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931329975.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.008 kcal (2) G-P(sol) polarization free energy of solvation -65.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds