Wall clock time and date at job start Tue Mar 31 2020 08:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52992 * 109.47189 * 2 1 4 4 C 1.53004 * 109.47101 * 240.00214 * 2 1 3 5 5 C 1.53001 * 109.47323 * 120.00351 * 2 1 3 6 6 C 1.50702 * 109.47084 * 65.59227 * 5 2 1 7 7 C 1.37978 * 120.07556 * 269.76150 * 6 5 2 8 8 C 1.38330 * 120.14665 * 180.25514 * 7 6 5 9 9 C 1.38393 * 120.28995 * 359.44509 * 8 7 6 10 10 C 1.37925 * 120.14389 * 0.55297 * 9 8 7 11 11 C 1.39554 * 120.07169 * 89.74094 * 6 5 2 12 12 C 1.47847 * 120.14496 * 359.97438 * 11 6 5 13 13 O 1.21542 * 120.00122 * 6.04979 * 12 11 6 14 14 N 1.34778 * 119.99760 * 186.04701 * 12 11 6 15 15 C 1.46504 * 120.00005 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.47360 * 180.02562 * 15 14 12 17 17 C 1.52996 * 109.47048 * 180.02562 * 16 15 14 18 18 C 1.50704 * 109.47171 * 179.97438 * 17 16 15 19 19 H 1.07997 * 119.99556 * 0.02562 * 18 17 16 20 20 C 1.37874 * 120.00149 * 180.02562 * 18 17 16 21 21 N 1.31515 * 120.00038 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99911 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47038 * 90.00140 * 22 20 18 24 24 H 1.48497 * 109.47202 * 209.99844 * 22 20 18 25 25 H 1.48499 * 109.47365 * 329.99936 * 22 20 18 26 26 H 1.09006 * 109.47141 * 299.99624 * 1 2 3 27 27 H 1.09001 * 109.47672 * 59.99781 * 1 2 3 28 28 H 1.08998 * 109.47363 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47296 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47618 * 300.00313 * 3 2 1 31 31 H 1.09006 * 109.47293 * 60.00207 * 3 2 1 32 32 H 1.09004 * 109.47179 * 293.21848 * 4 2 1 33 33 H 1.08998 * 109.46998 * 53.21265 * 4 2 1 34 34 H 1.09001 * 109.46926 * 173.21421 * 4 2 1 35 35 H 1.09001 * 109.46905 * 305.59669 * 5 2 1 36 36 H 1.08996 * 109.47542 * 185.59307 * 5 2 1 37 37 H 1.07998 * 119.92815 * 359.97438 * 7 6 5 38 38 H 1.08000 * 119.85937 * 179.70499 * 8 7 6 39 39 H 1.08004 * 119.92460 * 180.27988 * 9 8 7 40 40 H 1.08004 * 120.07529 * 179.74750 * 10 9 8 41 41 H 0.96997 * 120.00410 * 0.02562 * 14 12 11 42 42 H 1.08996 * 109.47132 * 300.00505 * 15 14 12 43 43 H 1.09007 * 109.46643 * 59.99990 * 15 14 12 44 44 H 1.08996 * 109.47279 * 300.00254 * 16 15 14 45 45 H 1.08995 * 109.47081 * 59.99991 * 16 15 14 46 46 H 1.08996 * 109.47212 * 300.00202 * 17 16 15 47 47 H 1.09004 * 109.47207 * 60.00273 * 17 16 15 48 48 H 0.96998 * 119.99837 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 6 1.6539 -2.1765 1.1818 7 6 0.4539 -2.5989 1.7159 8 6 0.1004 -3.9351 1.6596 9 6 0.9414 -4.8548 1.0578 10 6 2.1438 -4.4458 0.5200 11 6 2.5092 -3.0997 0.5787 12 6 3.7961 -2.6540 0.0034 13 8 4.1622 -1.5044 0.1511 14 7 4.5634 -3.5224 -0.6847 15 6 5.8390 -3.0809 -1.2543 16 6 6.5059 -4.2513 -1.9798 17 6 7.8383 -3.7903 -2.5741 18 6 8.4955 -4.9433 -3.2882 19 1 8.0111 -5.9081 -3.3157 20 6 9.7152 -4.7663 -3.9063 21 7 10.2890 -5.7726 -4.5290 22 14 10.5533 -3.0976 -3.8579 23 1 11.4282 -3.0176 -2.6607 24 1 11.3735 -2.9199 -5.0830 25 1 9.5247 -2.0286 -3.7916 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1299 1.4424 0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.7791 -1.7780 -1.1907 33 1 1.5808 -0.2823 -2.1351 34 1 3.1232 -0.6172 -1.3121 35 1 1.5971 -0.2686 2.1364 36 1 3.1253 -0.6354 1.3007 37 1 -0.2089 -1.8855 2.1830 38 1 -0.8379 -4.2614 2.0833 39 1 0.6574 -5.8959 1.0131 40 1 2.8011 -5.1651 0.0543 41 1 4.2712 -4.4397 -0.8029 42 1 5.6603 -2.2703 -1.9607 43 1 6.4914 -2.7291 -0.4550 44 1 6.6846 -5.0622 -1.2737 45 1 5.8534 -4.6026 -2.7790 46 1 7.6600 -2.9793 -3.2801 47 1 8.4907 -3.4392 -1.7745 48 1 11.1472 -5.6481 -4.9635 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931967810.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:48:53 Heat of formation + Delta-G solvation = -33.765812 kcal Electronic energy + Delta-G solvation = -25031.138106 eV Core-core repulsion = 21664.124904 eV Total energy + Delta-G solvation = -3367.013202 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.85808 -38.49519 -37.24247 -35.51550 -33.42034 -31.94600 -31.76481 -30.90572 -27.53467 -27.27303 -27.21927 -26.46802 -23.98511 -22.78216 -21.61579 -20.80631 -20.01951 -18.94564 -17.59334 -16.76549 -16.12022 -15.87059 -15.73324 -15.16138 -14.95838 -14.86974 -14.32475 -14.17360 -14.09132 -13.82572 -13.38905 -13.01033 -12.72333 -12.63754 -12.41951 -12.22376 -12.06913 -11.94357 -11.85902 -11.73333 -11.53731 -11.33892 -11.08236 -10.90915 -10.79811 -10.67617 -10.54634 -10.11440 -9.91837 -9.75095 -9.28951 -9.23699 -9.16520 -8.89432 -8.74448 -8.56790 -6.07573 -4.06408 0.71115 1.14379 2.84733 3.28561 3.30435 3.38075 3.41993 3.70688 4.43251 4.53610 4.59719 4.62533 4.77429 4.83543 4.86775 5.02738 5.12890 5.25772 5.26559 5.44764 5.51659 5.52738 5.56269 5.63405 5.65685 5.70094 5.75702 5.76484 5.89652 5.98346 5.99721 6.00096 6.07538 6.09642 6.20670 6.24250 6.32426 6.33181 6.42115 6.46666 6.59037 6.69919 6.72507 6.81921 7.20864 7.34444 7.60842 7.75204 8.32127 8.49019 8.96219 9.54668 11.05711 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.019052 B = 0.003080 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.272298 B = 9087.270489 C =10191.614724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.050 4.050 3 C -0.138 4.138 4 C -0.151 4.151 5 C -0.103 4.103 6 C -0.012 4.012 7 C -0.130 4.130 8 C -0.096 4.096 9 C -0.135 4.135 10 C -0.086 4.086 11 C -0.133 4.133 12 C 0.553 3.447 13 O -0.526 6.526 14 N -0.721 5.721 15 C 0.115 3.885 16 C -0.114 4.114 17 C -0.011 4.011 18 C -0.522 4.522 19 H 0.072 0.928 20 C 0.067 3.933 21 N -0.903 5.903 22 Si 0.880 3.120 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.264 1.264 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.042 0.958 34 H 0.077 0.923 35 H 0.060 0.940 36 H 0.124 0.876 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.126 0.874 40 H 0.127 0.873 41 H 0.398 0.602 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.019 0.981 47 H 0.014 0.986 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.199 7.669 12.964 27.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.050 4.050 3 C -0.195 4.195 4 C -0.208 4.208 5 C -0.139 4.139 6 C -0.013 4.013 7 C -0.148 4.148 8 C -0.115 4.115 9 C -0.153 4.153 10 C -0.105 4.105 11 C -0.136 4.136 12 C 0.341 3.659 13 O -0.406 6.406 14 N -0.372 5.372 15 C -0.007 4.007 16 C -0.152 4.152 17 C -0.048 4.048 18 C -0.560 4.560 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.542 5.542 22 Si 0.707 3.293 23 H -0.202 1.202 24 H -0.214 1.214 25 H -0.189 1.189 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.142 0.858 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.144 0.856 40 H 0.144 0.856 41 H 0.233 0.767 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.037 0.963 47 H 0.033 0.967 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -22.738 8.440 12.936 27.487 hybrid contribution 0.284 0.100 -0.147 0.335 sum -22.453 8.540 12.789 27.215 Atomic orbital electron populations 1.22009 0.95478 1.01652 1.01176 1.20271 0.94447 0.95180 0.95070 1.21824 1.01703 0.94990 1.00969 1.22233 1.03034 0.99609 0.95881 1.21340 1.06239 0.89282 0.97051 1.19982 0.92404 0.95882 0.93010 1.21066 0.96466 0.95941 1.01363 1.21320 0.99289 0.93240 0.97606 1.21062 0.94601 0.99943 0.99669 1.21349 0.96688 0.94641 0.97839 1.19866 0.95907 0.94008 1.03780 1.18228 0.83803 0.85368 0.78458 1.90573 1.73187 1.17904 1.58916 1.46151 1.22139 1.14042 1.54838 1.21670 0.82842 0.98728 0.97508 1.21710 0.98578 0.95940 0.98977 1.19496 0.91931 0.97565 0.95852 1.21095 1.04428 0.97106 1.33402 0.91023 1.25027 0.97071 0.96652 0.94719 1.69912 1.17347 1.31092 1.35851 0.86776 0.79824 0.85095 0.77609 1.20237 1.21364 1.18885 0.93042 0.93035 0.92560 0.92025 0.93022 0.93156 0.93140 0.93903 0.90377 0.92090 0.85803 0.85666 0.85848 0.85572 0.85556 0.76720 0.91623 0.91625 0.92132 0.92096 0.96303 0.96743 0.92684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 8.07 37.15 0.30 -1.03 16 2 C -0.05 -0.53 0.79 -154.51 -0.12 -0.66 16 3 C -0.14 -1.41 8.47 37.15 0.31 -1.10 16 4 C -0.15 -1.88 6.85 37.16 0.25 -1.63 16 5 C -0.10 -1.15 4.06 -27.88 -0.11 -1.27 16 6 C -0.01 -0.13 4.02 -104.23 -0.42 -0.55 16 7 C -0.13 -1.18 7.98 -39.64 -0.32 -1.50 16 8 C -0.10 -0.78 10.04 -39.49 -0.40 -1.17 16 9 C -0.13 -1.13 10.03 -39.64 -0.40 -1.53 16 10 C -0.09 -0.85 9.53 -39.19 -0.37 -1.22 16 11 C -0.13 -1.57 4.57 -104.97 -0.48 -2.05 16 12 C 0.55 7.71 6.24 -12.33 -0.08 7.63 16 13 O -0.53 -8.42 10.54 5.33 0.06 -8.36 16 14 N -0.72 -9.72 5.51 -61.25 -0.34 -10.06 16 15 C 0.12 1.84 5.67 -4.04 -0.02 1.82 16 16 C -0.11 -2.09 5.27 -26.73 -0.14 -2.23 16 17 C -0.01 -0.24 4.04 -27.88 -0.11 -0.36 16 18 C -0.52 -14.62 9.66 -34.44 -0.33 -14.96 16 19 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 20 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 21 N -0.90 -27.69 13.96 55.43 0.77 -26.91 16 22 Si 0.88 21.64 27.47 -169.99 -4.67 16.97 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.52 6.30 -51.93 -0.33 0.19 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.65 5.41 -51.93 -0.28 0.37 16 33 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 1.14 5.78 -51.93 -0.30 0.84 16 35 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 36 H 0.12 1.69 5.03 -52.21 -0.26 1.43 16 37 H 0.13 0.92 8.05 -52.49 -0.42 0.49 16 38 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 39 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 40 H 0.13 1.03 6.45 -52.48 -0.34 0.69 16 41 H 0.40 4.46 6.54 -40.82 -0.27 4.19 16 42 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 47 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 48 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 369.24 15.07 5.56 5.56 Total: -1.00 -31.23 369.24 -9.19 -40.42 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -8.04 Total: 2.33 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: -2.53 Total: -19.95 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 0.44 Total: -36.97 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: 0.06 Total: -8.36 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.23 -9.19 -40.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931967810.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.651 kcal (2) G-P(sol) polarization free energy of solvation -31.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds