Wall clock time and date at job start Tue Mar 31 2020 08:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52992 * 109.47189 * 2 1 4 4 C 1.53004 * 109.47101 * 240.00214 * 2 1 3 5 5 C 1.53001 * 109.47323 * 120.00351 * 2 1 3 6 6 C 1.50702 * 109.47084 * 65.59227 * 5 2 1 7 7 C 1.37978 * 120.07556 * 269.76150 * 6 5 2 8 8 C 1.38330 * 120.14665 * 180.25514 * 7 6 5 9 9 C 1.38393 * 120.28995 * 359.44509 * 8 7 6 10 10 C 1.37925 * 120.14389 * 0.55297 * 9 8 7 11 11 C 1.39554 * 120.07169 * 89.74094 * 6 5 2 12 12 C 1.47847 * 120.14496 * 359.97438 * 11 6 5 13 13 O 1.21542 * 120.00122 * 6.04979 * 12 11 6 14 14 N 1.34778 * 119.99760 * 186.04701 * 12 11 6 15 15 C 1.46504 * 120.00005 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.47360 * 180.02562 * 15 14 12 17 17 C 1.52996 * 109.47048 * 180.02562 * 16 15 14 18 18 C 1.50704 * 109.47171 * 179.97438 * 17 16 15 19 19 H 1.07997 * 119.99556 * 0.02562 * 18 17 16 20 20 C 1.37874 * 120.00149 * 180.02562 * 18 17 16 21 21 N 1.31515 * 120.00038 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99911 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47038 * 90.00140 * 22 20 18 24 24 H 1.48497 * 109.47202 * 209.99844 * 22 20 18 25 25 H 1.48499 * 109.47365 * 329.99936 * 22 20 18 26 26 H 1.09006 * 109.47141 * 299.99624 * 1 2 3 27 27 H 1.09001 * 109.47672 * 59.99781 * 1 2 3 28 28 H 1.08998 * 109.47363 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47296 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47618 * 300.00313 * 3 2 1 31 31 H 1.09006 * 109.47293 * 60.00207 * 3 2 1 32 32 H 1.09004 * 109.47179 * 293.21848 * 4 2 1 33 33 H 1.08998 * 109.46998 * 53.21265 * 4 2 1 34 34 H 1.09001 * 109.46926 * 173.21421 * 4 2 1 35 35 H 1.09001 * 109.46905 * 305.59669 * 5 2 1 36 36 H 1.08996 * 109.47542 * 185.59307 * 5 2 1 37 37 H 1.07998 * 119.92815 * 359.97438 * 7 6 5 38 38 H 1.08000 * 119.85937 * 179.70499 * 8 7 6 39 39 H 1.08004 * 119.92460 * 180.27988 * 9 8 7 40 40 H 1.08004 * 120.07529 * 179.74750 * 10 9 8 41 41 H 0.96997 * 120.00410 * 0.02562 * 14 12 11 42 42 H 1.08996 * 109.47132 * 300.00505 * 15 14 12 43 43 H 1.09007 * 109.46643 * 59.99990 * 15 14 12 44 44 H 1.08996 * 109.47279 * 300.00254 * 16 15 14 45 45 H 1.08995 * 109.47081 * 59.99991 * 16 15 14 46 46 H 1.08996 * 109.47212 * 300.00202 * 17 16 15 47 47 H 1.09004 * 109.47207 * 60.00273 * 17 16 15 48 48 H 0.96998 * 119.99837 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 6 1.6539 -2.1765 1.1818 7 6 0.4539 -2.5989 1.7159 8 6 0.1004 -3.9351 1.6596 9 6 0.9414 -4.8548 1.0578 10 6 2.1438 -4.4458 0.5200 11 6 2.5092 -3.0997 0.5787 12 6 3.7961 -2.6540 0.0034 13 8 4.1622 -1.5044 0.1511 14 7 4.5634 -3.5224 -0.6847 15 6 5.8390 -3.0809 -1.2543 16 6 6.5059 -4.2513 -1.9798 17 6 7.8383 -3.7903 -2.5741 18 6 8.4955 -4.9433 -3.2882 19 1 8.0111 -5.9081 -3.3157 20 6 9.7152 -4.7663 -3.9063 21 7 10.2890 -5.7726 -4.5290 22 14 10.5533 -3.0976 -3.8579 23 1 11.4282 -3.0176 -2.6607 24 1 11.3735 -2.9199 -5.0830 25 1 9.5247 -2.0286 -3.7916 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1299 1.4424 0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.7791 -1.7780 -1.1907 33 1 1.5808 -0.2823 -2.1351 34 1 3.1232 -0.6172 -1.3121 35 1 1.5971 -0.2686 2.1364 36 1 3.1253 -0.6354 1.3007 37 1 -0.2089 -1.8855 2.1830 38 1 -0.8379 -4.2614 2.0833 39 1 0.6574 -5.8959 1.0131 40 1 2.8011 -5.1651 0.0543 41 1 4.2712 -4.4397 -0.8029 42 1 5.6603 -2.2703 -1.9607 43 1 6.4914 -2.7291 -0.4550 44 1 6.6846 -5.0622 -1.2737 45 1 5.8534 -4.6026 -2.7790 46 1 7.6600 -2.9793 -3.2801 47 1 8.4907 -3.4392 -1.7745 48 1 11.1472 -5.6481 -4.9635 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931967810.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:48:52 Heat of formation + Delta-G solvation = -50.924551 kcal Electronic energy + Delta-G solvation = -25031.882164 eV Core-core repulsion = 21664.124904 eV Total energy + Delta-G solvation = -3367.757261 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.75947 -39.45297 -38.05080 -36.90891 -35.17350 -33.50873 -32.51222 -32.01643 -29.02444 -28.17766 -28.06185 -27.41390 -25.21121 -24.00375 -22.53430 -22.18874 -21.26926 -19.81537 -18.99381 -18.40126 -17.12695 -16.88160 -16.66135 -16.31154 -16.03548 -16.02557 -15.70195 -15.23301 -15.04301 -14.81166 -14.76410 -14.33971 -13.86976 -13.79696 -13.65565 -13.28783 -13.22259 -12.97114 -12.77115 -12.72477 -12.62182 -12.54308 -12.42145 -12.11003 -11.87655 -11.79031 -11.63039 -11.60247 -11.48790 -11.35564 -11.33579 -10.77065 -10.32683 -10.08376 -9.81516 -9.55366 -8.30286 -6.34209 -0.06320 0.45190 1.36165 1.37822 1.49610 1.92698 2.20503 2.35603 2.91786 3.05561 3.74462 3.79494 3.86880 4.00488 4.04029 4.12165 4.16725 4.19451 4.28277 4.46410 4.48371 4.55949 4.69694 4.72462 4.78863 4.85323 4.87926 4.89027 4.93666 4.94992 5.01440 5.03437 5.08828 5.13860 5.16480 5.22382 5.38886 5.40906 5.45598 5.50395 5.51218 5.54541 5.55453 5.56169 5.64734 5.82154 6.02032 6.26607 6.57508 6.73944 7.27547 7.30746 8.86243 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.019052 B = 0.003080 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.272298 B = 9087.270489 C =10191.614724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.050 4.050 3 C -0.135 4.135 4 C -0.145 4.145 5 C -0.100 4.100 6 C -0.025 4.025 7 C -0.132 4.132 8 C -0.089 4.089 9 C -0.136 4.136 10 C -0.093 4.093 11 C -0.155 4.155 12 C 0.550 3.450 13 O -0.552 6.552 14 N -0.717 5.717 15 C 0.130 3.870 16 C -0.101 4.101 17 C -0.011 4.011 18 C -0.531 4.531 19 H 0.037 0.963 20 C 0.005 3.995 21 N -0.951 5.951 22 Si 0.947 3.053 23 H -0.267 1.267 24 H -0.284 1.284 25 H -0.248 1.248 26 H 0.066 0.934 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.040 0.960 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.045 0.955 33 H 0.044 0.956 34 H 0.050 0.950 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.145 0.855 38 H 0.154 0.846 39 H 0.152 0.848 40 H 0.137 0.863 41 H 0.409 0.591 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.063 0.937 45 H 0.062 0.938 46 H 0.020 0.980 47 H 0.020 0.980 48 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.645 8.512 14.435 30.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.050 4.050 3 C -0.193 4.193 4 C -0.202 4.202 5 C -0.136 4.136 6 C -0.026 4.026 7 C -0.150 4.150 8 C -0.107 4.107 9 C -0.153 4.153 10 C -0.112 4.112 11 C -0.158 4.158 12 C 0.340 3.660 13 O -0.433 6.433 14 N -0.369 5.369 15 C 0.007 3.993 16 C -0.139 4.139 17 C -0.049 4.049 18 C -0.569 4.569 19 H 0.056 0.944 20 C -0.192 4.192 21 N -0.591 5.591 22 Si 0.771 3.229 23 H -0.192 1.192 24 H -0.210 1.210 25 H -0.171 1.171 26 H 0.085 0.915 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.113 0.887 37 H 0.163 0.837 38 H 0.172 0.828 39 H 0.169 0.831 40 H 0.155 0.845 41 H 0.246 0.754 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.081 0.919 46 H 0.039 0.961 47 H 0.038 0.962 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -25.211 9.270 14.420 30.487 hybrid contribution 0.971 -0.267 -0.585 1.164 sum -24.240 9.002 13.835 29.327 Atomic orbital electron populations 1.21943 0.93694 1.01964 1.02081 1.20277 0.95793 0.94921 0.93966 1.21802 1.00383 0.95136 1.01951 1.22151 1.01274 0.99646 0.97121 1.21223 1.04496 0.90133 0.97768 1.20065 0.93335 0.95473 0.93734 1.21300 0.95802 0.97020 1.00880 1.21724 1.00107 0.92626 0.96248 1.21413 0.93807 1.01402 0.98714 1.21554 0.97677 0.93953 0.98003 1.19778 0.95221 0.95280 1.05491 1.18661 0.84478 0.84933 0.77953 1.90585 1.73943 1.18985 1.59785 1.45988 1.21307 1.14758 1.54881 1.21282 0.83824 0.97287 0.96941 1.21483 0.96521 0.96747 0.99135 1.19453 0.94000 0.95742 0.95694 1.21465 1.04569 0.97345 1.33504 0.94448 1.25980 0.98008 1.00798 0.94406 1.70057 1.18106 1.33637 1.37340 0.85701 0.79000 0.80305 0.77933 1.19211 1.21000 1.17149 0.91470 0.92800 0.92504 0.94088 0.92517 0.91649 0.93644 0.93643 0.93059 0.90682 0.88662 0.83733 0.82797 0.83078 0.84524 0.75410 0.92384 0.92230 0.91782 0.91878 0.96124 0.96196 0.92489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 8.07 71.98 0.58 -1.66 16 2 C -0.05 -1.03 0.79 -52.18 -0.04 -1.07 16 3 C -0.14 -2.72 8.47 71.98 0.61 -2.11 16 4 C -0.14 -3.65 6.85 71.98 0.49 -3.16 16 5 C -0.10 -2.18 4.06 29.85 0.12 -2.06 16 6 C -0.03 -0.52 4.02 -19.61 -0.08 -0.60 16 7 C -0.13 -2.01 7.98 22.23 0.18 -1.83 16 8 C -0.09 -1.10 10.04 22.33 0.22 -0.88 16 9 C -0.14 -1.85 10.03 22.23 0.22 -1.63 16 10 C -0.09 -1.67 9.53 22.52 0.21 -1.46 16 11 C -0.15 -3.55 4.57 -20.09 -0.09 -3.64 16 12 C 0.55 15.49 6.24 86.79 0.54 16.03 16 13 O -0.55 -18.28 10.54 -3.85 -0.04 -18.33 16 14 N -0.72 -19.28 5.51 -465.97 -2.57 -21.84 16 15 C 0.13 4.16 5.67 86.38 0.49 4.65 16 16 C -0.10 -3.67 5.27 30.59 0.16 -3.51 16 17 C -0.01 -0.50 4.04 29.85 0.12 -0.38 16 18 C -0.53 -30.26 9.66 25.60 0.25 -30.01 16 19 H 0.04 2.31 7.99 -2.91 -0.02 2.29 16 20 C 0.00 0.29 5.47 84.65 0.46 0.75 16 21 N -0.95 -59.61 13.96 21.45 0.30 -59.31 16 22 Si 0.95 44.55 27.47 68.60 1.88 46.43 16 23 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 24 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 25 H -0.25 -10.91 6.54 99.48 0.65 -10.26 16 26 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 27 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.06 0.91 6.30 -2.39 -0.02 0.89 16 29 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 32 H 0.04 1.17 5.41 -2.38 -0.01 1.15 16 33 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.05 1.57 5.78 -2.39 -0.01 1.55 16 35 H 0.07 1.37 8.08 -2.39 -0.02 1.35 16 36 H 0.10 2.69 5.03 -6.78 -0.03 2.66 16 37 H 0.14 1.59 8.05 -2.91 -0.02 1.56 16 38 H 0.15 0.97 8.06 -2.91 -0.02 0.95 16 39 H 0.15 1.28 8.06 -2.91 -0.02 1.26 16 40 H 0.14 2.02 6.45 -2.91 -0.02 2.00 16 41 H 0.41 8.94 6.54 -92.71 -0.61 8.33 16 42 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 44 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 46 H 0.02 0.94 7.20 -2.39 -0.02 0.92 16 47 H 0.02 0.89 7.57 -2.39 -0.02 0.87 16 48 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -69.21 369.24 4.28 -64.92 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: 0.25 Total: 20.68 kcal Atomic # 6 Polarization: -37.01 SS G_CDS: 4.46 Total: -32.55 kcal Atomic # 7 Polarization: -78.88 SS G_CDS: -2.27 Total: -81.15 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: -0.04 Total: -18.33 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.88 Total: 46.43 kcal Total: -69.21 4.28 -64.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931967810.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.997 kcal (2) G-P(sol) polarization free energy of solvation -69.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds