Wall clock time and date at job start Tue Mar 31 2020 08:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50694 * 109.47382 * 2 1 4 4 C 1.38236 * 119.99550 * 90.00565 * 3 2 1 5 5 C 1.38237 * 120.00035 * 179.97438 * 4 3 2 6 6 C 1.38240 * 119.99790 * 0.02562 * 5 4 3 7 7 C 1.50699 * 119.99885 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.47434 * 52.54434 * 7 6 5 9 9 C 1.53002 * 109.47086 * 292.54622 * 7 6 5 10 10 C 1.50694 * 109.47168 * 172.54610 * 7 6 5 11 11 O 1.21284 * 119.99943 * 119.88084 * 10 7 6 12 12 N 1.34778 * 120.00103 * 299.88359 * 10 7 6 13 13 C 1.46500 * 119.99806 * 355.31184 * 12 10 7 14 14 C 1.46497 * 120.00111 * 175.31440 * 12 10 7 15 15 H 1.08998 * 109.47189 * 0.02562 * 14 12 10 16 16 C 1.53004 * 109.46877 * 239.99704 * 14 12 10 17 17 C 1.50707 * 109.47219 * 119.99864 * 14 12 10 18 18 H 1.07996 * 119.99799 * 359.97438 * 17 14 12 19 19 C 1.37869 * 119.99817 * 179.97438 * 17 14 12 20 20 N 1.31517 * 120.00534 * 359.97438 * 19 17 14 21 21 Si 1.86802 * 119.99932 * 179.97438 * 19 17 14 22 22 H 1.48498 * 109.47198 * 270.00270 * 21 19 17 23 23 H 1.48500 * 109.47087 * 29.99980 * 21 19 17 24 24 H 1.48506 * 109.47414 * 149.99923 * 21 19 17 25 25 C 1.38232 * 119.99786 * 0.25900 * 6 5 4 26 26 C 1.38233 * 120.00226 * 270.02546 * 3 2 1 27 27 H 1.09000 * 109.47262 * 59.98842 * 1 2 3 28 28 H 1.08994 * 109.47366 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46274 * 299.99778 * 1 2 3 30 30 H 1.09004 * 109.46776 * 240.00379 * 2 1 3 31 31 H 1.09000 * 109.47262 * 120.01158 * 2 1 3 32 32 H 1.08002 * 120.00334 * 0.02562 * 4 3 2 33 33 H 1.07997 * 120.00217 * 180.02562 * 5 4 3 34 34 H 1.08993 * 109.47351 * 172.95235 * 8 7 6 35 35 H 1.09001 * 109.46999 * 292.95530 * 8 7 6 36 36 H 1.09002 * 109.47153 * 52.95039 * 8 7 6 37 37 H 1.09003 * 109.47064 * 300.00224 * 9 7 6 38 38 H 1.08997 * 109.47418 * 59.99615 * 9 7 6 39 39 H 1.09000 * 109.46937 * 180.02562 * 9 7 6 40 40 H 1.09007 * 109.46782 * 265.30004 * 13 12 10 41 41 H 1.09006 * 109.47289 * 25.29713 * 13 12 10 42 42 H 1.08994 * 109.47491 * 145.30031 * 13 12 10 43 43 H 1.08997 * 109.46897 * 59.99999 * 16 14 12 44 44 H 1.09006 * 109.46931 * 180.02562 * 16 14 12 45 45 H 1.09001 * 109.47178 * 299.99768 * 16 14 12 46 46 H 0.97000 * 120.00158 * 180.02562 * 20 19 17 47 47 H 1.08002 * 119.99599 * 179.72285 * 25 6 5 48 48 H 1.07994 * 120.00634 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2629 2.0723 1.1972 5 6 2.7242 3.3754 1.1973 6 6 2.9546 4.0271 0.0002 7 6 3.4570 5.4479 0.0003 8 6 4.7067 5.5470 0.8774 9 6 2.3710 6.3728 0.5535 10 6 3.7981 5.8602 -1.4085 11 8 3.2272 6.7998 -1.9204 12 7 4.7376 5.1847 -2.0995 13 6 5.4995 4.1164 -1.4480 14 6 4.9970 5.5189 -3.5021 15 1 4.3395 6.3321 -3.8095 16 6 4.7334 4.2909 -4.3760 17 6 6.4331 5.9481 -3.6590 18 1 7.0870 5.9702 -2.7998 19 6 6.9121 6.3125 -4.8994 20 7 6.1159 6.2851 -5.9459 21 14 8.6919 6.8453 -5.0938 22 1 8.7932 8.3138 -4.8982 23 1 9.5293 6.1523 -4.0820 24 1 9.1682 6.4932 -6.4556 25 6 2.7185 3.3775 -1.1970 26 6 2.2623 2.0726 -1.1971 27 1 -0.3634 0.5140 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5140 0.8899 32 1 2.0833 1.5629 2.1325 33 1 2.9047 3.8842 2.1326 34 1 5.1418 6.5414 0.7790 35 1 4.4349 5.3706 1.9182 36 1 5.4335 4.7993 0.5601 37 1 1.4806 6.3022 -0.0713 38 1 2.1242 6.0746 1.5725 39 1 2.7342 7.4005 0.5532 40 1 6.4368 4.5202 -1.0650 41 1 4.9170 3.7055 -0.6234 42 1 5.7118 3.3287 -2.1708 43 1 3.6947 3.9805 -4.2625 44 1 4.9268 4.5394 -5.4196 45 1 5.3913 3.4781 -4.0685 46 1 6.4530 6.5412 -6.8186 47 1 2.8942 3.8883 -2.1322 48 1 2.0816 1.5639 -2.1324 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121188912.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:04:18 Heat of formation + Delta-G solvation = -13.940883 kcal Electronic energy + Delta-G solvation = -26258.383405 eV Core-core repulsion = 22892.229877 eV Total energy + Delta-G solvation = -3366.153529 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.69252 -38.60998 -35.67509 -35.35729 -33.12847 -32.67608 -30.82964 -29.35027 -28.71709 -27.09172 -26.03155 -25.23371 -24.35304 -23.31573 -21.95930 -21.08173 -19.79802 -18.17633 -17.01278 -16.23282 -15.82546 -15.69268 -15.14762 -14.64461 -14.46201 -14.39568 -13.73567 -13.67101 -13.61286 -13.28463 -13.12171 -12.89535 -12.58979 -12.52246 -12.09460 -12.06572 -11.85279 -11.64648 -11.48122 -11.37893 -11.35329 -11.23549 -11.02896 -10.88308 -10.82115 -10.67253 -10.58480 -10.44368 -10.22516 -10.12513 -9.14925 -8.82138 -8.78102 -8.40538 -8.33144 -7.52259 -6.05153 -4.12703 1.39823 1.52599 3.28153 3.34009 3.35312 3.39991 3.82015 3.96611 4.41402 4.66504 4.76225 4.87481 4.91180 5.10379 5.20102 5.23562 5.25911 5.28855 5.38969 5.44958 5.54979 5.60211 5.74178 5.77188 5.84677 5.87157 5.94808 5.99666 6.01297 6.05882 6.10505 6.15644 6.20297 6.29036 6.38805 6.48343 6.56642 6.69309 6.73260 6.79332 6.83449 7.06156 7.10674 7.46541 7.54154 7.73926 8.03302 8.22195 8.56496 8.85923 9.08617 9.53797 11.00007 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.018336 B = 0.004314 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.653498 B = 6488.967575 C = 7198.958791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 C -0.089 4.089 4 C -0.121 4.121 5 C -0.110 4.110 6 C -0.068 4.068 7 C -0.046 4.046 8 C -0.150 4.150 9 C -0.119 4.119 10 C 0.515 3.485 11 O -0.549 6.549 12 N -0.587 5.587 13 C 0.075 3.925 14 C 0.257 3.743 15 H 0.062 0.938 16 C -0.147 4.147 17 C -0.522 4.522 18 H 0.058 0.942 19 C 0.064 3.936 20 N -0.889 5.889 21 Si 0.897 3.103 22 H -0.280 1.280 23 H -0.275 1.275 24 H -0.286 1.286 25 C -0.107 4.107 26 C -0.113 4.113 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.118 0.882 33 H 0.121 0.879 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.061 0.939 38 H 0.056 0.944 39 H 0.064 0.936 40 H 0.048 0.952 41 H 0.071 0.929 42 H 0.066 0.934 43 H 0.010 0.990 44 H 0.094 0.906 45 H 0.031 0.969 46 H 0.263 0.737 47 H 0.133 0.867 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.357 -11.175 14.588 19.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C -0.089 4.089 4 C -0.139 4.139 5 C -0.128 4.128 6 C -0.068 4.068 7 C -0.049 4.049 8 C -0.207 4.207 9 C -0.176 4.176 10 C 0.301 3.699 11 O -0.427 6.427 12 N -0.318 5.318 13 C -0.069 4.069 14 C 0.157 3.843 15 H 0.080 0.920 16 C -0.205 4.205 17 C -0.561 4.561 18 H 0.077 0.923 19 C -0.138 4.138 20 N -0.527 5.527 21 Si 0.725 3.275 22 H -0.207 1.207 23 H -0.200 1.200 24 H -0.212 1.212 25 C -0.125 4.125 26 C -0.131 4.131 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.136 0.864 33 H 0.139 0.861 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.067 0.933 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.029 0.971 44 H 0.112 0.888 45 H 0.050 0.950 46 H 0.073 0.927 47 H 0.151 0.849 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.632 -10.648 14.077 19.230 hybrid contribution 1.166 0.262 -0.230 1.217 sum -6.466 -10.386 13.847 18.477 Atomic orbital electron populations 1.21746 0.94925 1.01428 1.02261 1.20516 0.96027 0.92910 1.02626 1.19853 0.99643 0.96117 0.93257 1.20892 1.00900 0.94839 0.97244 1.20869 1.00022 0.94680 0.97260 1.19526 0.99447 0.94354 0.93493 1.19807 0.97276 0.92828 0.94983 1.22188 0.96323 1.03529 0.98663 1.21611 0.97588 0.98819 0.99598 1.20117 0.80206 0.82800 0.86776 1.90647 1.53274 1.28409 1.70384 1.48184 1.35334 1.34186 1.14105 1.22007 0.95840 0.91159 0.97869 1.18932 0.96981 0.94392 0.73993 0.91987 1.22107 0.95946 0.97926 1.04525 1.21311 0.95498 1.45113 0.94179 0.92333 1.24883 0.97851 0.95305 0.95739 1.69875 1.35253 1.47946 0.99640 0.86513 0.84658 0.79001 0.77316 1.20650 1.19958 1.21160 1.21515 0.97428 0.94941 0.98594 1.20996 0.99891 0.94783 0.97462 0.92498 0.92627 0.92658 0.91124 0.91289 0.86443 0.86124 0.91773 0.91978 0.90542 0.92021 0.92527 0.91664 0.93327 0.91125 0.91543 0.97105 0.88787 0.95042 0.92748 0.84887 0.86243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.90 37.16 0.37 -0.84 16 2 C -0.08 -0.75 6.06 -27.89 -0.17 -0.92 16 3 C -0.09 -1.02 5.13 -104.63 -0.54 -1.55 16 4 C -0.12 -1.32 9.70 -39.58 -0.38 -1.71 16 5 C -0.11 -1.31 8.84 -39.58 -0.35 -1.66 16 6 C -0.07 -0.97 3.04 -104.62 -0.32 -1.29 16 7 C -0.05 -0.72 0.59 -156.81 -0.09 -0.81 16 8 C -0.15 -2.02 7.68 37.16 0.29 -1.74 16 9 C -0.12 -1.73 7.64 37.16 0.28 -1.45 16 10 C 0.51 10.76 5.11 -10.99 -0.06 10.70 16 11 O -0.55 -13.71 15.32 5.55 0.09 -13.62 16 12 N -0.59 -12.49 1.74 -175.26 -0.30 -12.80 16 13 C 0.07 1.32 7.00 59.85 0.42 1.74 16 14 C 0.26 6.56 2.63 -69.08 -0.18 6.38 16 15 H 0.06 1.85 6.91 -51.93 -0.36 1.49 16 16 C -0.15 -3.48 8.94 37.16 0.33 -3.15 16 17 C -0.52 -14.21 8.37 -34.44 -0.29 -14.50 16 18 H 0.06 1.58 7.51 -52.49 -0.39 1.19 16 19 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 20 N -0.89 -25.24 11.32 55.43 0.63 -24.62 16 21 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 25 C -0.11 -1.66 7.31 -39.58 -0.29 -1.95 16 26 C -0.11 -1.51 9.70 -39.58 -0.38 -1.90 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 31 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 32 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 33 H 0.12 1.20 7.23 -52.49 -0.38 0.82 16 34 H 0.06 0.92 8.13 -51.93 -0.42 0.50 16 35 H 0.06 0.66 7.29 -51.93 -0.38 0.28 16 36 H 0.08 1.03 4.61 -51.93 -0.24 0.79 16 37 H 0.06 0.97 8.10 -51.93 -0.42 0.55 16 38 H 0.06 0.65 7.88 -51.93 -0.41 0.25 16 39 H 0.06 0.99 8.10 -51.93 -0.42 0.57 16 40 H 0.05 0.84 7.45 -51.92 -0.39 0.46 16 41 H 0.07 1.08 3.27 -51.93 -0.17 0.91 16 42 H 0.07 1.18 6.45 -51.93 -0.33 0.85 16 43 H 0.01 0.22 7.68 -51.93 -0.40 -0.18 16 44 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 45 H 0.03 0.69 6.69 -51.93 -0.35 0.34 16 46 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 47 H 0.13 2.46 5.34 -52.49 -0.28 2.18 16 48 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 LS Contribution 365.92 15.07 5.51 5.51 Total: -1.00 -30.59 365.92 -8.30 -38.89 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -7.74 Total: 3.39 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: -1.46 Total: -12.97 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: 0.32 Total: -37.41 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: 0.09 Total: -13.62 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.59 -8.30 -38.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121188912.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.948 kcal (2) G-P(sol) polarization free energy of solvation -30.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds