Wall clock time and date at job start Tue Mar 31 2020 08:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50694 * 109.47382 * 2 1 4 4 C 1.38236 * 119.99550 * 90.00565 * 3 2 1 5 5 C 1.38237 * 120.00035 * 179.97438 * 4 3 2 6 6 C 1.38240 * 119.99790 * 0.02562 * 5 4 3 7 7 C 1.50699 * 119.99885 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.47434 * 52.54434 * 7 6 5 9 9 C 1.53002 * 109.47086 * 292.54622 * 7 6 5 10 10 C 1.50694 * 109.47168 * 172.54610 * 7 6 5 11 11 O 1.21284 * 119.99943 * 119.88084 * 10 7 6 12 12 N 1.34778 * 120.00103 * 299.88359 * 10 7 6 13 13 C 1.46500 * 119.99806 * 355.31184 * 12 10 7 14 14 C 1.46497 * 120.00111 * 175.31440 * 12 10 7 15 15 H 1.08998 * 109.47189 * 0.02562 * 14 12 10 16 16 C 1.53004 * 109.46877 * 239.99704 * 14 12 10 17 17 C 1.50707 * 109.47219 * 119.99864 * 14 12 10 18 18 H 1.07996 * 119.99799 * 359.97438 * 17 14 12 19 19 C 1.37869 * 119.99817 * 179.97438 * 17 14 12 20 20 N 1.31517 * 120.00534 * 359.97438 * 19 17 14 21 21 Si 1.86802 * 119.99932 * 179.97438 * 19 17 14 22 22 H 1.48498 * 109.47198 * 270.00270 * 21 19 17 23 23 H 1.48500 * 109.47087 * 29.99980 * 21 19 17 24 24 H 1.48506 * 109.47414 * 149.99923 * 21 19 17 25 25 C 1.38232 * 119.99786 * 0.25900 * 6 5 4 26 26 C 1.38233 * 120.00226 * 270.02546 * 3 2 1 27 27 H 1.09000 * 109.47262 * 59.98842 * 1 2 3 28 28 H 1.08994 * 109.47366 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46274 * 299.99778 * 1 2 3 30 30 H 1.09004 * 109.46776 * 240.00379 * 2 1 3 31 31 H 1.09000 * 109.47262 * 120.01158 * 2 1 3 32 32 H 1.08002 * 120.00334 * 0.02562 * 4 3 2 33 33 H 1.07997 * 120.00217 * 180.02562 * 5 4 3 34 34 H 1.08993 * 109.47351 * 172.95235 * 8 7 6 35 35 H 1.09001 * 109.46999 * 292.95530 * 8 7 6 36 36 H 1.09002 * 109.47153 * 52.95039 * 8 7 6 37 37 H 1.09003 * 109.47064 * 300.00224 * 9 7 6 38 38 H 1.08997 * 109.47418 * 59.99615 * 9 7 6 39 39 H 1.09000 * 109.46937 * 180.02562 * 9 7 6 40 40 H 1.09007 * 109.46782 * 265.30004 * 13 12 10 41 41 H 1.09006 * 109.47289 * 25.29713 * 13 12 10 42 42 H 1.08994 * 109.47491 * 145.30031 * 13 12 10 43 43 H 1.08997 * 109.46897 * 59.99999 * 16 14 12 44 44 H 1.09006 * 109.46931 * 180.02562 * 16 14 12 45 45 H 1.09001 * 109.47178 * 299.99768 * 16 14 12 46 46 H 0.97000 * 120.00158 * 180.02562 * 20 19 17 47 47 H 1.08002 * 119.99599 * 179.72285 * 25 6 5 48 48 H 1.07994 * 120.00634 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2629 2.0723 1.1972 5 6 2.7242 3.3754 1.1973 6 6 2.9546 4.0271 0.0002 7 6 3.4570 5.4479 0.0003 8 6 4.7067 5.5470 0.8774 9 6 2.3710 6.3728 0.5535 10 6 3.7981 5.8602 -1.4085 11 8 3.2272 6.7998 -1.9204 12 7 4.7376 5.1847 -2.0995 13 6 5.4995 4.1164 -1.4480 14 6 4.9970 5.5189 -3.5021 15 1 4.3395 6.3321 -3.8095 16 6 4.7334 4.2909 -4.3760 17 6 6.4331 5.9481 -3.6590 18 1 7.0870 5.9702 -2.7998 19 6 6.9121 6.3125 -4.8994 20 7 6.1159 6.2851 -5.9459 21 14 8.6919 6.8453 -5.0938 22 1 8.7932 8.3138 -4.8982 23 1 9.5293 6.1523 -4.0820 24 1 9.1682 6.4932 -6.4556 25 6 2.7185 3.3775 -1.1970 26 6 2.2623 2.0726 -1.1971 27 1 -0.3634 0.5140 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5140 0.8899 32 1 2.0833 1.5629 2.1325 33 1 2.9047 3.8842 2.1326 34 1 5.1418 6.5414 0.7790 35 1 4.4349 5.3706 1.9182 36 1 5.4335 4.7993 0.5601 37 1 1.4806 6.3022 -0.0713 38 1 2.1242 6.0746 1.5725 39 1 2.7342 7.4005 0.5532 40 1 6.4368 4.5202 -1.0650 41 1 4.9170 3.7055 -0.6234 42 1 5.7118 3.3287 -2.1708 43 1 3.6947 3.9805 -4.2625 44 1 4.9268 4.5394 -5.4196 45 1 5.3913 3.4781 -4.0685 46 1 6.4530 6.5412 -6.8186 47 1 2.8942 3.8883 -2.1322 48 1 2.0816 1.5639 -2.1324 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121188912.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:04:17 Heat of formation + Delta-G solvation = -29.377146 kcal Electronic energy + Delta-G solvation = -26259.052772 eV Core-core repulsion = 22892.229877 eV Total energy + Delta-G solvation = -3366.822895 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.02959 -39.86374 -37.30706 -36.80048 -34.70462 -33.97122 -31.89169 -31.20249 -29.61786 -28.37855 -27.48791 -27.33170 -25.47056 -24.43190 -23.12957 -22.29039 -21.21461 -19.68950 -18.62857 -18.05004 -17.40468 -16.93431 -16.50214 -16.05032 -15.78379 -15.64843 -14.97005 -14.86068 -14.76091 -14.52005 -14.41367 -14.13388 -13.97414 -13.74845 -13.50902 -13.38371 -13.11603 -13.08244 -12.92410 -12.82865 -12.77361 -12.59160 -12.49185 -12.25095 -12.21951 -12.13287 -12.07641 -11.83353 -11.62356 -11.46684 -11.19733 -10.61779 -10.41500 -9.76123 -9.36162 -9.28387 -8.16062 -6.32973 0.41650 0.54617 1.38832 1.40230 1.50249 1.76887 2.29077 2.47517 2.84456 3.11317 3.50676 3.62225 3.98330 4.01213 4.08444 4.12530 4.21503 4.39113 4.42484 4.55770 4.60356 4.63172 4.68012 4.71935 4.73770 4.76337 4.83801 4.85020 4.86677 4.95800 4.97697 5.02485 5.10482 5.13427 5.17705 5.23506 5.25289 5.32474 5.43228 5.43737 5.56326 5.61034 5.65420 5.72754 5.78861 6.01134 6.13990 6.15296 6.74454 6.81759 7.29776 7.46499 8.88054 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.018336 B = 0.004314 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.653498 B = 6488.967575 C = 7198.958791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.083 4.083 3 C -0.084 4.084 4 C -0.113 4.113 5 C -0.100 4.100 6 C -0.081 4.081 7 C -0.036 4.036 8 C -0.147 4.147 9 C -0.115 4.115 10 C 0.504 3.496 11 O -0.605 6.605 12 N -0.589 5.589 13 C 0.078 3.922 14 C 0.262 3.738 15 H 0.006 0.994 16 C -0.129 4.129 17 C -0.538 4.538 18 H 0.059 0.941 19 C 0.015 3.985 20 N -0.918 5.918 21 Si 0.965 3.035 22 H -0.282 1.282 23 H -0.262 1.262 24 H -0.279 1.279 25 C -0.132 4.132 26 C -0.124 4.124 27 H 0.041 0.959 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.153 0.847 33 H 0.152 0.848 34 H 0.049 0.951 35 H 0.104 0.896 36 H 0.077 0.923 37 H 0.039 0.961 38 H 0.098 0.902 39 H 0.051 0.949 40 H 0.053 0.947 41 H 0.100 0.900 42 H 0.061 0.939 43 H 0.018 0.982 44 H 0.068 0.932 45 H 0.045 0.955 46 H 0.264 0.736 47 H 0.092 0.908 48 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.688 -13.504 18.296 23.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.120 4.120 3 C -0.084 4.084 4 C -0.130 4.130 5 C -0.118 4.118 6 C -0.081 4.081 7 C -0.039 4.039 8 C -0.204 4.204 9 C -0.173 4.173 10 C 0.293 3.707 11 O -0.487 6.487 12 N -0.319 5.319 13 C -0.064 4.064 14 C 0.160 3.840 15 H 0.024 0.976 16 C -0.187 4.187 17 C -0.576 4.576 18 H 0.077 0.923 19 C -0.185 4.185 20 N -0.557 5.557 21 Si 0.789 3.211 22 H -0.208 1.208 23 H -0.186 1.186 24 H -0.204 1.204 25 C -0.150 4.150 26 C -0.142 4.142 27 H 0.061 0.939 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.108 0.892 32 H 0.171 0.829 33 H 0.170 0.830 34 H 0.068 0.932 35 H 0.122 0.878 36 H 0.096 0.904 37 H 0.058 0.942 38 H 0.117 0.883 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.118 0.882 42 H 0.080 0.920 43 H 0.037 0.963 44 H 0.087 0.913 45 H 0.064 0.936 46 H 0.074 0.926 47 H 0.110 0.890 48 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.953 -13.012 17.811 23.128 hybrid contribution 0.852 0.950 -1.392 1.888 sum -6.101 -12.063 16.419 21.268 Atomic orbital electron populations 1.21736 0.94410 1.02343 1.01741 1.20581 0.96348 0.91318 1.03726 1.20169 0.98312 0.97253 0.92669 1.21306 0.99050 0.94422 0.98264 1.21145 0.98654 0.94982 0.97004 1.19408 1.01039 0.93426 0.94233 1.19773 0.98823 0.94121 0.91187 1.22215 0.94951 1.02794 1.00450 1.21625 0.96220 0.98053 1.01390 1.21215 0.78934 0.81668 0.88852 1.90604 1.54941 1.30961 1.72185 1.48100 1.35988 1.35034 1.12743 1.22169 0.96004 0.89868 0.98357 1.18510 0.95180 0.93326 0.76962 0.97631 1.21853 0.96722 0.97597 1.02557 1.21561 0.96086 1.45546 0.94408 0.92320 1.25739 1.02156 0.95182 0.95376 1.70023 1.37149 1.48445 1.00065 0.85461 0.79572 0.78271 0.77748 1.20818 1.18578 1.20418 1.21271 1.00072 0.96082 0.97612 1.21054 1.00356 0.94119 0.98701 0.93934 0.91054 0.92282 0.91113 0.89165 0.82931 0.82997 0.93200 0.87757 0.90426 0.94225 0.88290 0.93003 0.92836 0.88184 0.91998 0.96337 0.91335 0.93584 0.92648 0.89019 0.86395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.90 71.98 0.71 -1.26 16 2 C -0.08 -1.20 6.06 29.85 0.18 -1.01 16 3 C -0.08 -1.67 5.13 -19.87 -0.10 -1.77 16 4 C -0.11 -1.93 9.70 22.27 0.22 -1.71 16 5 C -0.10 -1.93 8.84 22.27 0.20 -1.73 16 6 C -0.08 -2.18 3.04 -19.87 -0.06 -2.24 16 7 C -0.04 -1.11 0.59 -53.68 -0.03 -1.14 16 8 C -0.15 -3.61 7.68 71.98 0.55 -3.05 16 9 C -0.12 -3.29 7.64 71.98 0.55 -2.74 16 10 C 0.50 22.18 5.11 87.65 0.45 22.63 16 11 O -0.60 -32.69 15.32 -3.04 -0.05 -32.74 16 12 N -0.59 -26.24 1.74 -826.78 -1.44 -27.68 16 13 C 0.08 2.75 7.00 127.77 0.89 3.64 16 14 C 0.26 14.23 2.63 44.25 0.12 14.35 16 15 H 0.01 0.37 6.91 -2.39 -0.02 0.36 16 16 C -0.13 -6.46 8.94 71.98 0.64 -5.82 16 17 C -0.54 -30.26 8.37 25.60 0.21 -30.05 16 18 H 0.06 3.22 7.51 -2.91 -0.02 3.20 16 19 C 0.01 0.84 5.30 84.65 0.45 1.29 16 20 N -0.92 -54.20 11.32 21.44 0.24 -53.96 16 21 Si 0.96 44.10 29.54 68.60 2.03 46.13 16 22 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 23 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 24 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 25 C -0.13 -4.15 7.31 22.27 0.16 -3.99 16 26 C -0.12 -3.24 9.70 22.27 0.22 -3.02 16 27 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.07 1.04 8.09 -2.38 -0.02 1.02 16 31 H 0.09 0.97 8.09 -2.39 -0.02 0.95 16 32 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 33 H 0.15 2.00 7.23 -2.91 -0.02 1.98 16 34 H 0.05 1.37 8.13 -2.39 -0.02 1.35 16 35 H 0.10 1.69 7.29 -2.39 -0.02 1.67 16 36 H 0.08 1.88 4.61 -2.39 -0.01 1.86 16 37 H 0.04 1.28 8.10 -2.39 -0.02 1.26 16 38 H 0.10 1.94 7.88 -2.39 -0.02 1.92 16 39 H 0.05 1.59 8.10 -2.39 -0.02 1.57 16 40 H 0.05 1.82 7.45 -2.38 -0.02 1.80 16 41 H 0.10 2.94 3.27 -2.38 -0.01 2.93 16 42 H 0.06 2.21 6.45 -2.39 -0.02 2.19 16 43 H 0.02 0.84 7.68 -2.39 -0.02 0.82 16 44 H 0.07 3.79 6.07 -2.38 -0.01 3.78 16 45 H 0.05 2.11 6.69 -2.39 -0.02 2.09 16 46 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 47 H 0.09 3.64 5.34 -2.91 -0.02 3.62 16 48 H 0.12 2.97 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -72.40 365.92 7.08 -65.32 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: 0.94 Total: 20.56 kcal Atomic # 6 Polarization: -22.99 SS G_CDS: 5.36 Total: -17.63 kcal Atomic # 7 Polarization: -80.45 SS G_CDS: -1.19 Total: -81.64 kcal Atomic # 8 Polarization: -32.69 SS G_CDS: -0.05 Total: -32.74 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -72.40 7.08 -65.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121188912.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.943 kcal (2) G-P(sol) polarization free energy of solvation -72.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds