Wall clock time and date at job start Tue Mar 31 2020 09:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46918 * 2 1 4 4 C 1.53001 * 109.47256 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47526 * 185.12168 * 4 3 2 6 6 H 1.08999 * 109.46803 * 56.55969 * 5 4 3 7 7 C 1.53000 * 109.46874 * 296.56276 * 5 4 3 8 8 C 1.53003 * 109.47107 * 304.80096 * 7 5 4 9 9 C 1.52996 * 109.47185 * 176.55966 * 5 4 3 10 10 N 1.46503 * 109.47181 * 184.99990 * 9 5 4 11 11 C 1.34769 * 120.00246 * 180.02562 * 10 9 5 12 12 O 1.21614 * 119.99774 * 359.97438 * 11 10 9 13 13 C 1.47434 * 120.00366 * 179.97438 * 11 10 9 14 14 C 1.39234 * 120.27930 * 353.60894 * 13 11 10 15 15 C 1.38221 * 120.08992 * 180.28128 * 14 13 11 16 16 C 1.38827 * 120.67190 * 359.71868 * 15 14 13 17 17 C 1.37590 * 120.57570 * 359.97438 * 16 15 14 18 18 C 1.40707 * 119.88082 * 0.02562 * 17 16 15 19 19 C 1.40891 * 120.32890 * 180.02562 * 18 17 16 20 20 H 1.07992 * 120.00421 * 147.38385 * 19 18 17 21 21 C 1.40274 * 119.99717 * 327.39107 * 19 18 17 22 22 N 1.30627 * 120.00076 * 341.04433 * 21 19 18 23 23 Si 1.86802 * 120.00090 * 161.05499 * 21 19 18 24 24 H 1.48497 * 109.47324 * 179.97438 * 23 21 19 25 25 H 1.48498 * 109.47139 * 299.99645 * 23 21 19 26 26 H 1.48504 * 109.47187 * 59.99433 * 23 21 19 27 27 H 1.09008 * 109.47375 * 299.99553 * 1 2 3 28 28 H 1.08998 * 109.47633 * 59.99730 * 1 2 3 29 29 H 1.08999 * 109.46999 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46934 * 240.00274 * 2 1 3 31 31 H 1.09000 * 109.46947 * 119.99992 * 2 1 3 32 32 H 1.09003 * 109.47517 * 60.00450 * 3 2 1 33 33 H 1.08992 * 109.47283 * 300.00101 * 3 2 1 34 34 H 1.09001 * 109.46681 * 65.12395 * 4 3 2 35 35 H 1.09000 * 109.47109 * 305.12253 * 4 3 2 36 36 H 1.09000 * 109.47311 * 64.80221 * 7 5 4 37 37 H 1.08995 * 109.46699 * 184.80796 * 7 5 4 38 38 H 1.08997 * 109.46983 * 306.14683 * 8 7 5 39 39 H 1.09002 * 109.46696 * 66.14641 * 8 7 5 40 40 H 1.08996 * 109.47639 * 186.14363 * 8 7 5 41 41 H 1.09003 * 109.46769 * 64.99981 * 9 5 4 42 42 H 1.08996 * 109.47097 * 305.00131 * 9 5 4 43 43 H 0.97003 * 119.99631 * 359.97438 * 10 9 5 44 44 H 1.07999 * 119.95276 * 0.02562 * 14 13 11 45 45 H 1.07998 * 119.65884 * 179.74581 * 15 14 13 46 46 H 1.08007 * 119.70681 * 180.02562 * 16 15 14 47 47 H 1.07995 * 120.06156 * 180.02562 * 17 16 15 48 48 H 0.96995 * 120.00211 * 353.60956 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8793 0.1294 6 1 3.6667 3.3321 1.0307 7 6 3.6422 3.6874 -1.0939 8 6 4.1211 2.9859 -2.3665 9 6 5.6074 2.8725 0.2163 10 7 6.0888 4.2347 0.4592 11 6 7.4106 4.4721 0.5723 12 8 8.2037 3.5555 0.4733 13 6 7.8952 5.8431 0.8161 14 6 7.0069 6.9151 0.7985 15 6 7.4664 8.1995 1.0218 16 6 8.8112 8.4371 1.2713 17 6 9.7119 7.3974 1.3012 18 6 9.2700 6.0805 1.0771 19 6 10.1841 5.0087 1.1061 20 1 9.8668 4.0377 1.4565 21 6 11.5063 5.2029 0.6801 22 7 11.8059 6.2268 -0.0738 23 14 12.8387 3.9972 1.1904 24 1 14.1391 4.4229 0.6133 25 1 12.9397 3.9689 2.6717 26 1 12.4965 2.6410 0.6916 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6766 1.9563 -0.8899 34 1 3.9336 1.0102 -0.9315 35 1 3.9330 0.8515 0.8414 36 1 2.5550 3.7643 -1.1086 37 1 4.0765 4.6858 -1.0441 38 1 5.1951 2.8112 -2.3028 39 1 3.6036 2.0324 -2.4724 40 1 3.9058 3.6141 -3.2307 41 1 6.0229 2.5019 -0.7207 42 1 5.9218 2.2247 1.0346 43 1 5.4562 4.9658 0.5378 44 1 5.9582 6.7434 0.6060 45 1 6.7720 9.0264 1.0025 46 1 9.1533 9.4469 1.4441 47 1 10.7562 7.5918 1.4964 48 1 11.1020 6.8001 -0.4154 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136165231.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:06:55 Heat of formation + Delta-G solvation = -76.500392 kcal Electronic energy + Delta-G solvation = -24687.448323 eV Core-core repulsion = 21318.582010 eV Total energy + Delta-G solvation = -3368.866313 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.91493 -39.33183 -38.39778 -36.06486 -35.65375 -34.20263 -31.91106 -31.23090 -30.90959 -28.83336 -27.10810 -25.53829 -24.65783 -23.72591 -22.74028 -21.85169 -21.18147 -20.25657 -19.76035 -18.08413 -17.13463 -16.82398 -16.54155 -16.38606 -15.90489 -15.77880 -15.49563 -15.21678 -15.16259 -14.64931 -14.41101 -14.08468 -13.91112 -13.70772 -13.53633 -13.41210 -13.17411 -13.05594 -12.91516 -12.70464 -12.50088 -12.27535 -12.05562 -12.01895 -11.95002 -11.80761 -11.56157 -11.50592 -11.34444 -11.29794 -11.14138 -10.98331 -10.35202 -9.96221 -9.60760 -9.51019 -9.10437 -6.46685 0.40612 0.90202 1.45365 1.61307 1.75735 2.25757 2.30074 2.45658 2.73379 3.56682 3.70448 3.86776 3.89993 4.16852 4.19368 4.22635 4.28351 4.33490 4.43003 4.46429 4.57815 4.61934 4.65132 4.71470 4.77715 4.86907 4.88950 4.93840 4.95671 5.00184 5.10765 5.13266 5.14471 5.22225 5.29622 5.32002 5.35077 5.42333 5.48051 5.51980 5.60098 5.61971 5.66582 5.71831 5.89538 5.96288 6.19255 6.33335 6.69304 6.85356 6.92947 7.62086 8.03000 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.017842 B = 0.003194 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.948320 B = 8763.922468 C = 9805.505380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.112 4.112 4 C -0.112 4.112 5 C -0.086 4.086 6 H 0.085 0.915 7 C -0.117 4.117 8 C -0.156 4.156 9 C 0.126 3.874 10 N -0.724 5.724 11 C 0.556 3.444 12 O -0.582 6.582 13 C -0.284 4.284 14 C -0.041 4.041 15 C -0.245 4.245 16 C -0.072 4.072 17 C -0.228 4.228 18 C 0.094 3.906 19 C -0.508 4.508 20 H 0.079 0.921 21 C -0.003 4.003 22 N -0.816 5.816 23 Si 1.115 2.885 24 H -0.263 1.263 25 H -0.259 1.259 26 H -0.272 1.272 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.086 0.914 37 H 0.055 0.945 38 H 0.034 0.966 39 H 0.069 0.931 40 H 0.055 0.945 41 H 0.050 0.950 42 H 0.044 0.956 43 H 0.405 0.595 44 H 0.134 0.866 45 H 0.137 0.863 46 H 0.124 0.876 47 H 0.090 0.910 48 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.749 -5.867 -0.859 20.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C -0.150 4.150 4 C -0.150 4.150 5 C -0.105 4.105 6 H 0.103 0.897 7 C -0.154 4.154 8 C -0.213 4.213 9 C 0.002 3.998 10 N -0.378 5.378 11 C 0.348 3.652 12 O -0.464 6.464 13 C -0.289 4.289 14 C -0.060 4.060 15 C -0.264 4.264 16 C -0.090 4.090 17 C -0.247 4.247 18 C 0.089 3.911 19 C -0.536 4.536 20 H 0.097 0.903 21 C -0.219 4.219 22 N -0.440 5.440 23 Si 0.932 3.068 24 H -0.187 1.187 25 H -0.183 1.183 26 H -0.197 1.197 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.105 0.895 37 H 0.073 0.927 38 H 0.054 0.946 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.242 0.758 44 H 0.152 0.848 45 H 0.155 0.845 46 H 0.142 0.858 47 H 0.108 0.892 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.577 -6.776 -1.059 18.867 hybrid contribution -1.437 0.700 0.025 1.599 sum -19.014 -6.076 -1.034 19.988 Atomic orbital electron populations 1.21771 0.95403 1.01796 1.01967 1.21545 0.96245 0.96811 1.01851 1.21586 0.93847 0.96969 1.02570 1.21593 0.96522 0.94537 1.02335 1.21359 0.91428 0.97934 0.99775 0.89714 1.21556 1.01853 0.98367 0.93636 1.21869 1.00457 1.01297 0.97676 1.21400 0.95385 0.83057 0.99913 1.45772 1.06163 1.10726 1.75102 1.18460 0.82217 0.88826 0.75650 1.90656 1.55841 1.47229 1.52714 1.19803 0.95656 0.92816 1.20625 1.21137 0.97971 0.92187 0.94659 1.20807 0.95387 0.96659 1.13586 1.21158 0.93925 0.97859 0.96106 1.21209 0.98859 0.93546 1.11103 1.17915 0.92253 0.93124 0.87759 1.21094 0.96607 0.98861 1.37037 0.90305 1.28485 1.01911 0.99182 0.92301 1.70483 1.38976 1.12458 1.22130 0.83035 0.72614 0.73183 0.77926 1.18734 1.18337 1.19718 0.92665 0.92496 0.92588 0.92185 0.92407 0.91740 0.91121 0.91492 0.92264 0.89541 0.92670 0.94647 0.91248 0.92562 0.93218 0.93763 0.75804 0.84814 0.84531 0.85761 0.89179 0.90442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.91 71.98 0.71 -1.00 16 2 C -0.13 -1.64 5.93 30.59 0.18 -1.46 16 3 C -0.11 -1.51 4.80 30.59 0.15 -1.36 16 4 C -0.11 -1.91 4.33 30.59 0.13 -1.78 16 5 C -0.09 -1.71 2.22 -10.79 -0.02 -1.74 16 6 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 7 C -0.12 -2.11 5.23 30.60 0.16 -1.95 16 8 C -0.16 -3.07 9.11 71.98 0.66 -2.41 16 9 C 0.13 3.77 4.93 86.38 0.43 4.20 16 10 N -0.72 -25.09 5.18 -466.36 -2.42 -27.51 16 11 C 0.56 26.51 7.71 86.67 0.67 27.18 16 12 O -0.58 -32.87 13.59 -4.07 -0.06 -32.93 16 13 C -0.28 -14.00 5.92 -19.70 -0.12 -14.12 16 14 C -0.04 -1.62 9.51 22.51 0.21 -1.41 16 15 C -0.25 -9.37 10.03 22.41 0.22 -9.15 16 16 C -0.07 -3.07 10.01 22.26 0.22 -2.84 16 17 C -0.23 -11.72 7.85 22.72 0.18 -11.54 16 18 C 0.09 5.22 5.21 -21.11 -0.11 5.11 16 19 C -0.51 -29.97 7.68 23.41 0.18 -29.79 16 20 H 0.08 4.93 5.92 -2.91 -0.02 4.91 16 21 C 0.00 -0.19 5.05 85.37 0.43 0.24 16 22 N -0.82 -46.32 12.47 21.88 0.27 -46.05 16 23 Si 1.12 47.96 29.98 68.60 2.06 50.01 16 24 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 25 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 26 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 27 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.77 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.07 0.88 6.90 -2.39 -0.02 0.86 16 34 H 0.07 1.18 6.29 -2.39 -0.02 1.17 16 35 H 0.06 1.07 8.14 -2.39 -0.02 1.06 16 36 H 0.09 1.21 6.89 -2.39 -0.02 1.19 16 37 H 0.05 1.09 7.08 -2.39 -0.02 1.07 16 38 H 0.03 0.88 6.20 -2.39 -0.01 0.86 16 39 H 0.07 1.16 6.64 -2.39 -0.02 1.14 16 40 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.05 1.65 6.22 -2.39 -0.01 1.63 16 42 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.40 11.44 5.72 -92.71 -0.53 10.91 16 44 H 0.13 4.05 6.45 -2.91 -0.02 4.03 16 45 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 46 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 47 H 0.09 4.85 6.80 -2.91 -0.02 4.83 16 48 H 0.28 16.54 6.51 -92.71 -0.60 15.94 16 Total: -1.00 -69.25 373.15 4.72 -64.53 By element: Atomic # 1 Polarization: 35.19 SS G_CDS: 0.58 Total: 35.77 kcal Atomic # 6 Polarization: -48.12 SS G_CDS: 4.29 Total: -43.83 kcal Atomic # 7 Polarization: -71.41 SS G_CDS: -2.15 Total: -73.56 kcal Atomic # 8 Polarization: -32.87 SS G_CDS: -0.06 Total: -32.93 kcal Atomic # 14 Polarization: 47.96 SS G_CDS: 2.06 Total: 50.01 kcal Total: -69.25 4.72 -64.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136165231.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.972 kcal (2) G-P(sol) polarization free energy of solvation -69.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds