Wall clock time and date at job start Tue Mar 31 2020 09:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47142 * 2 1 4 4 C 1.53000 * 109.47143 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47143 * 180.02562 * 4 3 2 6 6 H 1.09005 * 109.47175 * 305.00083 * 5 4 3 7 7 C 1.52997 * 109.47320 * 64.99796 * 5 4 3 8 8 C 1.53011 * 109.46701 * 58.98083 * 7 5 4 9 9 C 1.52992 * 109.47325 * 185.00386 * 5 4 3 10 10 N 1.46497 * 109.47344 * 175.23664 * 9 5 4 11 11 C 1.34778 * 120.00129 * 184.24739 * 10 9 5 12 12 O 1.21613 * 119.99981 * 359.97438 * 11 10 9 13 13 C 1.47430 * 120.00108 * 180.27694 * 11 10 9 14 14 C 1.39233 * 120.28065 * 354.98317 * 13 11 10 15 15 C 1.38224 * 120.08854 * 180.02562 * 14 13 11 16 16 C 1.38827 * 120.67955 * 0.02562 * 15 14 13 17 17 C 1.37592 * 120.56915 * 0.02562 * 16 15 14 18 18 C 1.40711 * 119.88319 * 359.67674 * 17 16 15 19 19 C 1.40892 * 120.32740 * 180.29795 * 18 17 16 20 20 H 1.08001 * 119.99362 * 216.32372 * 19 18 17 21 21 C 1.40273 * 120.00070 * 36.32736 * 19 18 17 22 22 N 1.30620 * 119.99772 * 9.43161 * 21 19 18 23 23 Si 1.86804 * 119.99663 * 189.43112 * 21 19 18 24 24 H 1.48500 * 109.47092 * 59.99941 * 23 21 19 25 25 H 1.48498 * 109.46642 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.46999 * 300.00018 * 23 21 19 27 27 H 1.09003 * 109.47013 * 60.00557 * 1 2 3 28 28 H 1.09000 * 109.46725 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47283 * 300.00301 * 1 2 3 30 30 H 1.08995 * 109.47612 * 240.00127 * 2 1 3 31 31 H 1.09003 * 109.47013 * 119.99443 * 2 1 3 32 32 H 1.08996 * 109.47278 * 59.99696 * 3 2 1 33 33 H 1.08995 * 109.46905 * 299.99823 * 3 2 1 34 34 H 1.09002 * 109.47056 * 60.00596 * 4 3 2 35 35 H 1.08995 * 109.47395 * 299.99914 * 4 3 2 36 36 H 1.08991 * 109.47557 * 178.97612 * 7 5 4 37 37 H 1.09000 * 109.47081 * 298.98411 * 7 5 4 38 38 H 1.08998 * 109.46908 * 61.43029 * 8 7 5 39 39 H 1.08998 * 109.46801 * 181.43374 * 8 7 5 40 40 H 1.08999 * 109.46756 * 301.42859 * 8 7 5 41 41 H 1.09004 * 109.47640 * 55.23338 * 9 5 4 42 42 H 1.08999 * 109.47205 * 295.23443 * 9 5 4 43 43 H 0.97005 * 120.00337 * 4.24750 * 10 9 5 44 44 H 1.07999 * 119.95278 * 359.97438 * 14 13 11 45 45 H 1.08004 * 119.65428 * 179.97438 * 15 14 13 46 46 H 1.07993 * 119.71570 * 179.97438 * 16 15 14 47 47 H 1.07997 * 120.05918 * 180.02562 * 17 16 15 48 48 H 0.97007 * 119.99810 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0013 6 1 3.6457 3.4244 -0.8406 7 6 3.6747 3.5687 1.3086 8 6 4.2633 2.7970 2.4915 9 6 5.6048 2.8869 -0.1239 10 7 6.0837 4.2667 -0.2377 11 6 7.3929 4.5107 -0.4451 12 8 8.1767 3.5855 -0.5373 13 6 7.8758 5.8995 -0.5535 14 6 6.9729 6.9593 -0.5470 15 6 7.4300 8.2597 -0.6494 16 6 8.7879 8.5266 -0.7601 17 6 9.7042 7.5003 -0.7704 18 6 9.2656 6.1677 -0.6612 19 6 10.1962 5.1099 -0.6644 20 1 9.9507 4.1763 -1.1487 21 6 11.4415 5.2694 -0.0387 22 7 11.6704 6.3208 0.7018 23 14 12.7722 3.9780 -0.2643 24 1 13.1077 3.8596 -1.7061 25 1 13.9839 4.3781 0.4952 26 1 12.2827 2.6695 0.2390 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 3.9337 0.9286 -0.8892 35 1 3.9330 0.9289 0.8908 36 1 4.0536 4.5906 1.3169 37 1 2.5878 3.5835 1.3891 38 1 5.3512 2.8039 2.4246 39 1 3.9535 3.2693 3.4237 40 1 3.9043 1.7680 2.4687 41 1 5.8973 2.3264 -1.0118 42 1 6.0425 2.4222 0.7596 43 1 5.4586 5.0048 -0.1637 44 1 5.9139 6.7649 -0.4627 45 1 6.7234 9.0765 -0.6441 46 1 9.1278 9.5486 -0.8396 47 1 10.7586 7.7173 -0.8564 48 1 12.5314 6.4309 1.1348 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136165232.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:06:58 Heat of formation + Delta-G solvation = -55.341485 kcal Electronic energy + Delta-G solvation = -24660.700209 eV Core-core repulsion = 21292.751416 eV Total energy + Delta-G solvation = -3367.948793 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.17969 -37.93451 -36.59181 -34.87129 -33.73813 -32.75903 -30.23425 -29.97483 -29.58321 -27.60974 -25.42852 -24.36483 -23.70478 -22.01721 -21.21141 -20.72735 -19.43871 -18.96911 -17.46560 -16.30124 -16.18974 -15.37075 -15.24443 -15.02386 -14.54322 -14.22462 -14.07745 -13.76352 -13.60294 -13.21704 -13.02644 -12.73540 -12.66330 -12.52847 -12.33964 -12.06849 -11.98490 -11.58354 -11.46343 -11.35521 -11.09494 -11.06572 -11.00440 -10.78684 -10.65365 -10.51480 -10.46908 -10.42665 -10.25231 -10.08683 -9.64414 -9.22135 -8.33687 -8.26035 -7.56420 -7.30384 -6.76811 -4.36085 2.39222 2.84527 3.11380 3.17773 3.27013 4.00121 4.01406 4.21910 4.60612 4.68779 4.72889 4.79413 4.90105 5.01492 5.02445 5.26240 5.39033 5.42741 5.54951 5.59831 5.63276 5.64328 5.72324 5.77453 5.79488 5.82714 5.94496 6.00434 6.01338 6.07380 6.08903 6.16430 6.24441 6.27663 6.31028 6.34170 6.50350 6.66422 6.96691 7.12302 7.20346 7.30013 7.48341 7.64094 7.90141 8.02206 8.20532 8.44509 8.71288 8.86082 8.94012 9.48252 10.19781 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.017462 B = 0.003234 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.141956 B = 8654.874849 C = 9709.057222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.119 4.119 4 C -0.115 4.115 5 C -0.099 4.099 6 H 0.073 0.927 7 C -0.119 4.119 8 C -0.157 4.157 9 C 0.128 3.872 10 N -0.747 5.747 11 C 0.564 3.436 12 O -0.540 6.540 13 C -0.259 4.259 14 C -0.058 4.058 15 C -0.245 4.245 16 C -0.096 4.096 17 C -0.147 4.147 18 C 0.147 3.853 19 C -0.423 4.423 20 H 0.109 0.891 21 C 0.069 3.931 22 N -0.795 5.795 23 Si 0.916 3.084 24 H -0.263 1.263 25 H -0.280 1.280 26 H -0.262 1.262 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.050 0.950 40 H 0.056 0.944 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.390 0.610 44 H 0.089 0.911 45 H 0.091 0.909 46 H 0.091 0.909 47 H 0.114 0.886 48 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.802 -6.628 0.710 17.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.157 4.157 4 C -0.153 4.153 5 C -0.118 4.118 6 H 0.092 0.908 7 C -0.157 4.157 8 C -0.215 4.215 9 C 0.003 3.997 10 N -0.402 5.402 11 C 0.357 3.643 12 O -0.419 6.419 13 C -0.264 4.264 14 C -0.077 4.077 15 C -0.264 4.264 16 C -0.115 4.115 17 C -0.166 4.166 18 C 0.143 3.857 19 C -0.451 4.451 20 H 0.127 0.873 21 C -0.149 4.149 22 N -0.421 5.421 23 Si 0.740 3.260 24 H -0.188 1.188 25 H -0.205 1.205 26 H -0.187 1.187 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.225 0.775 44 H 0.107 0.893 45 H 0.109 0.891 46 H 0.109 0.891 47 H 0.132 0.868 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -15.034 -7.218 0.801 16.697 hybrid contribution 0.248 0.020 0.164 0.298 sum -14.786 -7.199 0.964 16.474 Atomic orbital electron populations 1.21778 0.96131 1.01381 1.01720 1.21542 0.95611 0.97223 1.01964 1.21648 0.95452 0.96469 1.02112 1.21628 0.95235 0.95922 1.02540 1.21414 0.95236 0.96809 0.98335 0.90821 1.21551 1.00268 0.99518 0.94333 1.21893 1.01889 1.00122 0.97551 1.21222 0.92250 0.84691 1.01502 1.46004 1.09350 1.07260 1.77574 1.18399 0.80529 0.89814 0.75517 1.90649 1.54019 1.46412 1.50844 1.19502 0.94894 0.90472 1.21526 1.20648 0.96244 0.93011 0.97756 1.20283 0.95060 0.95099 1.15975 1.20790 0.93482 0.97418 0.99823 1.21319 0.98595 0.92374 1.04300 1.17487 0.89950 0.92756 0.85479 1.20239 0.96130 1.01082 1.27676 0.87294 1.26130 0.99166 0.96172 0.93398 1.69711 1.24033 1.26638 1.21695 0.86226 0.78723 0.81466 0.79539 1.18761 1.20540 1.18669 0.92838 0.92992 0.92840 0.92118 0.92129 0.91739 0.92137 0.91827 0.91255 0.91889 0.91962 0.91978 0.93138 0.92537 0.92297 0.92071 0.77504 0.89328 0.89127 0.89101 0.86791 0.90740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 37.16 0.37 -0.68 16 2 C -0.13 -0.96 5.93 -26.73 -0.16 -1.12 16 3 C -0.12 -0.98 4.97 -26.73 -0.13 -1.11 16 4 C -0.12 -1.10 4.45 -26.73 -0.12 -1.22 16 5 C -0.10 -1.10 2.22 -90.62 -0.20 -1.30 16 6 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 7 C -0.12 -1.26 5.32 -26.73 -0.14 -1.40 16 8 C -0.16 -1.72 9.22 37.16 0.34 -1.38 16 9 C 0.13 1.93 4.86 -4.05 -0.02 1.91 16 10 N -0.75 -13.32 5.27 -61.38 -0.32 -13.64 16 11 C 0.56 13.20 7.72 -12.52 -0.10 13.10 16 12 O -0.54 -14.41 13.53 5.27 0.07 -14.34 16 13 C -0.26 -6.39 5.92 -104.36 -0.62 -7.01 16 14 C -0.06 -1.24 9.52 -39.22 -0.37 -1.61 16 15 C -0.24 -5.23 10.03 -39.37 -0.39 -5.63 16 16 C -0.10 -2.19 10.01 -39.60 -0.40 -2.58 16 17 C -0.15 -3.76 8.62 -38.88 -0.34 -4.09 16 18 C 0.15 4.00 5.47 -106.54 -0.58 3.42 16 19 C -0.42 -11.78 7.76 -37.81 -0.29 -12.07 16 20 H 0.11 3.15 5.76 -52.49 -0.30 2.85 16 21 C 0.07 1.81 5.24 -17.30 -0.09 1.72 16 22 N -0.80 -20.90 11.31 55.56 0.63 -20.28 16 23 Si 0.92 19.94 29.57 -169.99 -5.03 14.92 16 24 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 25 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 26 H -0.26 -5.84 7.11 56.52 0.40 -5.44 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.52 6.59 -51.93 -0.34 0.18 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.67 6.11 -51.93 -0.32 0.35 16 36 H 0.06 0.72 7.05 -51.93 -0.37 0.35 16 37 H 0.06 0.57 6.61 -51.93 -0.34 0.22 16 38 H 0.06 0.81 6.42 -51.93 -0.33 0.48 16 39 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.55 6.22 -51.93 -0.32 0.23 16 41 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.06 0.99 6.25 -51.93 -0.32 0.67 16 43 H 0.39 6.08 5.56 -40.82 -0.23 5.86 16 44 H 0.09 1.57 6.43 -52.49 -0.34 1.23 16 45 H 0.09 1.67 8.06 -52.48 -0.42 1.25 16 46 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 47 H 0.11 2.98 6.77 -52.49 -0.36 2.62 16 48 H 0.28 6.76 8.29 -40.82 -0.34 6.42 16 LS Contribution 373.80 15.07 5.63 5.63 Total: -1.00 -29.54 373.80 -10.04 -39.59 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -7.78 Total: 9.16 kcal Atomic # 6 Polarization: -17.79 SS G_CDS: -3.24 Total: -21.04 kcal Atomic # 7 Polarization: -34.22 SS G_CDS: 0.30 Total: -33.92 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: 0.07 Total: -14.34 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.03 Total: 14.92 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.54 -10.04 -39.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136165232.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.755 kcal (2) G-P(sol) polarization free energy of solvation -29.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds