Wall clock time and date at job start Tue Mar 31 2020 09:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47142 * 2 1 4 4 C 1.53000 * 109.47143 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47143 * 180.02562 * 4 3 2 6 6 H 1.09005 * 109.47175 * 305.00083 * 5 4 3 7 7 C 1.52997 * 109.47320 * 64.99796 * 5 4 3 8 8 C 1.53011 * 109.46701 * 58.98083 * 7 5 4 9 9 C 1.52992 * 109.47325 * 185.00386 * 5 4 3 10 10 N 1.46497 * 109.47344 * 175.23664 * 9 5 4 11 11 C 1.34778 * 120.00129 * 184.24739 * 10 9 5 12 12 O 1.21613 * 119.99981 * 359.97438 * 11 10 9 13 13 C 1.47430 * 120.00108 * 180.27694 * 11 10 9 14 14 C 1.39233 * 120.28065 * 354.98317 * 13 11 10 15 15 C 1.38224 * 120.08854 * 180.02562 * 14 13 11 16 16 C 1.38827 * 120.67955 * 0.02562 * 15 14 13 17 17 C 1.37592 * 120.56915 * 0.02562 * 16 15 14 18 18 C 1.40711 * 119.88319 * 359.67674 * 17 16 15 19 19 C 1.40892 * 120.32740 * 180.29795 * 18 17 16 20 20 H 1.08001 * 119.99362 * 216.32372 * 19 18 17 21 21 C 1.40273 * 120.00070 * 36.32736 * 19 18 17 22 22 N 1.30620 * 119.99772 * 9.43161 * 21 19 18 23 23 Si 1.86804 * 119.99663 * 189.43112 * 21 19 18 24 24 H 1.48500 * 109.47092 * 59.99941 * 23 21 19 25 25 H 1.48498 * 109.46642 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.46999 * 300.00018 * 23 21 19 27 27 H 1.09003 * 109.47013 * 60.00557 * 1 2 3 28 28 H 1.09000 * 109.46725 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47283 * 300.00301 * 1 2 3 30 30 H 1.08995 * 109.47612 * 240.00127 * 2 1 3 31 31 H 1.09003 * 109.47013 * 119.99443 * 2 1 3 32 32 H 1.08996 * 109.47278 * 59.99696 * 3 2 1 33 33 H 1.08995 * 109.46905 * 299.99823 * 3 2 1 34 34 H 1.09002 * 109.47056 * 60.00596 * 4 3 2 35 35 H 1.08995 * 109.47395 * 299.99914 * 4 3 2 36 36 H 1.08991 * 109.47557 * 178.97612 * 7 5 4 37 37 H 1.09000 * 109.47081 * 298.98411 * 7 5 4 38 38 H 1.08998 * 109.46908 * 61.43029 * 8 7 5 39 39 H 1.08998 * 109.46801 * 181.43374 * 8 7 5 40 40 H 1.08999 * 109.46756 * 301.42859 * 8 7 5 41 41 H 1.09004 * 109.47640 * 55.23338 * 9 5 4 42 42 H 1.08999 * 109.47205 * 295.23443 * 9 5 4 43 43 H 0.97005 * 120.00337 * 4.24750 * 10 9 5 44 44 H 1.07999 * 119.95278 * 359.97438 * 14 13 11 45 45 H 1.08004 * 119.65428 * 179.97438 * 15 14 13 46 46 H 1.07993 * 119.71570 * 179.97438 * 16 15 14 47 47 H 1.07997 * 120.05918 * 180.02562 * 17 16 15 48 48 H 0.97007 * 119.99810 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0013 6 1 3.6457 3.4244 -0.8406 7 6 3.6747 3.5687 1.3086 8 6 4.2633 2.7970 2.4915 9 6 5.6048 2.8869 -0.1239 10 7 6.0837 4.2667 -0.2377 11 6 7.3929 4.5107 -0.4451 12 8 8.1767 3.5855 -0.5373 13 6 7.8758 5.8995 -0.5535 14 6 6.9729 6.9593 -0.5470 15 6 7.4300 8.2597 -0.6494 16 6 8.7879 8.5266 -0.7601 17 6 9.7042 7.5003 -0.7704 18 6 9.2656 6.1677 -0.6612 19 6 10.1962 5.1099 -0.6644 20 1 9.9507 4.1763 -1.1487 21 6 11.4415 5.2694 -0.0387 22 7 11.6704 6.3208 0.7018 23 14 12.7722 3.9780 -0.2643 24 1 13.1077 3.8596 -1.7061 25 1 13.9839 4.3781 0.4952 26 1 12.2827 2.6695 0.2390 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 3.9337 0.9286 -0.8892 35 1 3.9330 0.9289 0.8908 36 1 4.0536 4.5906 1.3169 37 1 2.5878 3.5835 1.3891 38 1 5.3512 2.8039 2.4246 39 1 3.9535 3.2693 3.4237 40 1 3.9043 1.7680 2.4687 41 1 5.8973 2.3264 -1.0118 42 1 6.0425 2.4222 0.7596 43 1 5.4586 5.0048 -0.1637 44 1 5.9139 6.7649 -0.4627 45 1 6.7234 9.0765 -0.6441 46 1 9.1278 9.5486 -0.8396 47 1 10.7586 7.7173 -0.8564 48 1 12.5314 6.4309 1.1348 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136165232.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:06:57 Heat of formation + Delta-G solvation = -70.267232 kcal Electronic energy + Delta-G solvation = -24661.347438 eV Core-core repulsion = 21292.751416 eV Total energy + Delta-G solvation = -3368.596022 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.80945 -39.19460 -38.25859 -35.93154 -35.49159 -34.15592 -31.84455 -31.42030 -30.92378 -28.75240 -27.23031 -25.51816 -24.60777 -23.61164 -22.66174 -21.81393 -21.08979 -20.05772 -19.30667 -17.97357 -17.14972 -17.02756 -16.66846 -16.32677 -15.96529 -15.56597 -15.28840 -15.22835 -14.89100 -14.62288 -14.48265 -14.08952 -13.84011 -13.56593 -13.45108 -13.39706 -13.12589 -13.04465 -12.86801 -12.82397 -12.44782 -12.31727 -12.24667 -12.02490 -11.93404 -11.78468 -11.54360 -11.49425 -11.32521 -11.28737 -11.13087 -11.07690 -10.21357 -9.89462 -9.38222 -9.20093 -8.67431 -6.36411 0.52725 1.02114 1.32311 1.44002 1.50047 2.20912 2.36683 2.53221 2.80555 3.71727 3.73361 3.89663 3.93078 4.19072 4.23972 4.32300 4.35757 4.39267 4.48064 4.58444 4.59127 4.65958 4.68591 4.75434 4.85228 4.90044 4.96304 4.98820 5.03006 5.09228 5.13400 5.17572 5.23789 5.24883 5.32520 5.33455 5.34513 5.37903 5.49541 5.54258 5.62306 5.64518 5.72844 5.82703 6.06067 6.11862 6.35759 6.66497 6.82150 6.93303 7.03423 7.70207 8.31137 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.017462 B = 0.003234 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.141956 B = 8654.874849 C = 9709.057222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.113 4.113 4 C -0.112 4.112 5 C -0.087 4.087 6 H 0.084 0.916 7 C -0.117 4.117 8 C -0.157 4.157 9 C 0.126 3.874 10 N -0.725 5.725 11 C 0.557 3.443 12 O -0.583 6.583 13 C -0.278 4.278 14 C -0.054 4.054 15 C -0.234 4.234 16 C -0.093 4.093 17 C -0.176 4.176 18 C 0.115 3.885 19 C -0.465 4.465 20 H 0.085 0.915 21 C 0.031 3.969 22 N -0.825 5.825 23 Si 0.977 3.023 24 H -0.258 1.258 25 H -0.259 1.259 26 H -0.274 1.274 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.056 0.944 37 H 0.086 0.914 38 H 0.033 0.967 39 H 0.057 0.943 40 H 0.067 0.933 41 H 0.045 0.955 42 H 0.048 0.952 43 H 0.405 0.595 44 H 0.132 0.868 45 H 0.134 0.866 46 H 0.121 0.879 47 H 0.096 0.904 48 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.686 -5.800 0.957 19.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.151 4.151 4 C -0.150 4.150 5 C -0.105 4.105 6 H 0.103 0.897 7 C -0.154 4.154 8 C -0.214 4.214 9 C 0.003 3.997 10 N -0.379 5.379 11 C 0.350 3.650 12 O -0.465 6.465 13 C -0.283 4.283 14 C -0.073 4.073 15 C -0.253 4.253 16 C -0.111 4.111 17 C -0.195 4.195 18 C 0.111 3.889 19 C -0.494 4.494 20 H 0.103 0.897 21 C -0.183 4.183 22 N -0.452 5.452 23 Si 0.799 3.201 24 H -0.182 1.182 25 H -0.183 1.183 26 H -0.199 1.199 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.105 0.895 38 H 0.052 0.948 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.242 0.758 44 H 0.150 0.850 45 H 0.152 0.848 46 H 0.139 0.861 47 H 0.114 0.886 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -17.971 -6.362 1.051 19.093 hybrid contribution 0.927 -0.162 0.082 0.944 sum -17.045 -6.524 1.133 18.286 Atomic orbital electron populations 1.21770 0.95420 1.01783 1.01964 1.21541 0.96230 0.96813 1.01846 1.21597 0.93904 0.96978 1.02575 1.21603 0.96478 0.94626 1.02325 1.21350 0.91644 0.98250 0.99287 0.89727 1.21564 1.01690 0.98766 0.93403 1.21882 1.00023 1.01195 0.98303 1.21389 0.95324 0.82745 1.00289 1.45769 1.07633 1.09053 1.75415 1.18475 0.81981 0.89163 0.75418 1.90627 1.55658 1.47383 1.52804 1.19887 0.94855 0.92219 1.21330 1.21071 0.97944 0.92256 0.96031 1.20818 0.95110 0.96282 1.13084 1.21184 0.93947 0.98102 0.97880 1.21260 0.98549 0.92855 1.06843 1.17881 0.91354 0.93425 0.86215 1.20183 0.98144 1.00773 1.30262 0.89736 1.26796 1.00592 0.98194 0.92742 1.69735 1.24839 1.28040 1.22545 0.85333 0.76708 0.78278 0.79815 1.18193 1.18301 1.19880 0.92677 0.92595 0.92493 0.92421 0.92169 0.91069 0.91791 0.92280 0.91414 0.92541 0.89513 0.94816 0.92346 0.91362 0.93643 0.93329 0.75824 0.85001 0.84800 0.86144 0.88558 0.90082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.91 71.98 0.71 -1.02 16 2 C -0.13 -1.66 5.93 30.59 0.18 -1.48 16 3 C -0.11 -1.55 4.97 30.59 0.15 -1.40 16 4 C -0.11 -1.95 4.45 30.59 0.14 -1.81 16 5 C -0.09 -1.74 2.22 -10.80 -0.02 -1.77 16 6 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 7 C -0.12 -2.15 5.32 30.60 0.16 -1.99 16 8 C -0.16 -3.19 9.22 71.99 0.66 -2.53 16 9 C 0.13 3.80 4.86 86.38 0.42 4.22 16 10 N -0.72 -25.38 5.27 -466.37 -2.46 -27.84 16 11 C 0.56 26.65 7.72 86.66 0.67 27.32 16 12 O -0.58 -32.72 13.53 -4.07 -0.06 -32.77 16 13 C -0.28 -13.82 5.92 -19.70 -0.12 -13.94 16 14 C -0.05 -2.19 9.52 22.51 0.21 -1.98 16 15 C -0.23 -9.15 10.03 22.41 0.22 -8.93 16 16 C -0.09 -4.05 10.01 22.26 0.22 -3.82 16 17 C -0.18 -9.21 8.62 22.72 0.20 -9.01 16 18 C 0.11 6.47 5.47 -21.11 -0.12 6.36 16 19 C -0.46 -27.43 7.76 23.41 0.18 -27.25 16 20 H 0.08 5.27 5.76 -2.91 -0.02 5.25 16 21 C 0.03 1.71 5.24 85.37 0.45 2.16 16 22 N -0.83 -45.10 11.31 21.88 0.25 -44.85 16 23 Si 0.98 42.74 29.57 68.60 2.03 44.76 16 24 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 25 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 26 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 27 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 0.90 6.59 -2.39 -0.02 0.88 16 33 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.07 1.20 6.11 -2.39 -0.01 1.19 16 36 H 0.06 1.12 7.05 -2.39 -0.02 1.10 16 37 H 0.09 1.23 6.61 -2.39 -0.02 1.22 16 38 H 0.03 0.87 6.42 -2.39 -0.02 0.85 16 39 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.07 1.21 6.22 -2.39 -0.01 1.19 16 41 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 42 H 0.05 1.61 6.25 -2.39 -0.01 1.60 16 43 H 0.40 11.65 5.56 -92.70 -0.52 11.13 16 44 H 0.13 4.08 6.43 -2.91 -0.02 4.06 16 45 H 0.13 4.14 8.06 -2.91 -0.02 4.12 16 46 H 0.12 4.47 8.06 -2.91 -0.02 4.45 16 47 H 0.10 5.27 6.77 -2.91 -0.02 5.25 16 48 H 0.29 14.28 8.29 -92.70 -0.77 13.51 16 Total: -1.00 -68.36 373.80 4.52 -63.83 By element: Atomic # 1 Polarization: 33.31 SS G_CDS: 0.43 Total: 33.74 kcal Atomic # 6 Polarization: -41.19 SS G_CDS: 4.33 Total: -36.87 kcal Atomic # 7 Polarization: -70.48 SS G_CDS: -2.21 Total: -72.69 kcal Atomic # 8 Polarization: -32.72 SS G_CDS: -0.06 Total: -32.77 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.76 kcal Total: -68.36 4.52 -63.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136165232.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.435 kcal (2) G-P(sol) polarization free energy of solvation -68.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds