Wall clock time and date at job start Tue Mar 31 2020 08:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47015 * 2 1 4 4 C 1.53005 * 109.47370 * 180.02562 * 3 2 1 5 5 C 1.53116 * 109.57254 * 294.71522 * 4 3 2 6 6 C 1.53042 * 109.27913 * 182.40453 * 5 4 3 7 7 N 1.46852 * 109.51839 * 59.18083 * 6 5 4 8 8 C 1.46902 * 110.99671 * 174.16007 * 7 6 5 9 9 C 1.50701 * 109.47040 * 169.99746 * 8 7 6 10 10 C 1.38297 * 119.93136 * 269.73251 * 9 8 7 11 11 C 1.38107 * 120.06833 * 179.72556 * 10 9 8 12 12 C 1.38880 * 119.92632 * 0.54348 * 11 10 9 13 13 O 1.35753 * 120.06540 * 179.74892 * 12 11 10 14 14 C 1.34833 * 116.99577 * 174.44188 * 13 12 11 15 15 H 1.07997 * 120.00098 * 5.05387 * 14 13 12 16 16 C 1.38653 * 119.99745 * 185.05409 * 14 13 12 17 17 N 1.31563 * 119.99980 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00128 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.46927 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47094 * 120.00094 * 18 16 14 21 21 H 1.48501 * 109.47142 * 240.00186 * 18 16 14 22 22 C 1.38884 * 119.86249 * 359.72687 * 12 11 10 23 23 C 1.38089 * 119.93087 * 0.02562 * 22 12 11 24 24 C 1.46844 * 111.19753 * 298.25545 * 7 6 5 25 25 C 1.53045 * 109.52154 * 61.74630 * 24 7 6 26 26 H 1.08997 * 109.47077 * 60.00051 * 1 2 3 27 27 H 1.08999 * 109.47037 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46941 * 299.99652 * 1 2 3 29 29 H 1.09002 * 109.47392 * 240.00187 * 2 1 3 30 30 H 1.08997 * 109.47077 * 119.99949 * 2 1 3 31 31 H 1.09001 * 109.47486 * 60.00340 * 3 2 1 32 32 H 1.09001 * 109.47636 * 299.99890 * 3 2 1 33 33 H 1.09005 * 109.51907 * 54.87094 * 4 3 2 34 34 H 1.09002 * 109.50419 * 62.47023 * 5 4 3 35 35 H 1.09001 * 109.50856 * 302.34955 * 5 4 3 36 36 H 1.08997 * 109.46040 * 299.16533 * 6 5 4 37 37 H 1.08993 * 109.46272 * 179.19420 * 6 5 4 38 38 H 1.08997 * 109.47204 * 290.00245 * 8 7 6 39 39 H 1.09003 * 109.46975 * 50.00530 * 8 7 6 40 40 H 1.07999 * 119.96581 * 359.97438 * 10 9 8 41 41 H 1.07999 * 120.03226 * 180.27139 * 11 10 9 42 42 H 0.97001 * 119.99997 * 179.97438 * 17 16 14 43 43 H 1.07994 * 120.02996 * 179.97438 * 22 12 11 44 44 H 1.08002 * 119.96634 * 180.02562 * 23 22 12 45 45 H 1.08997 * 109.45945 * 181.75715 * 24 7 6 46 46 H 1.08994 * 109.46812 * 301.74108 * 24 7 6 47 47 H 1.08996 * 109.49942 * 60.76179 * 25 24 7 48 48 H 1.09002 * 109.49968 * 180.83899 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0836 0.8392 1.3096 6 6 5.6128 0.8974 1.3275 7 7 6.0521 2.2933 1.2053 8 6 7.5091 2.4019 1.3577 9 6 7.9507 3.7940 0.9859 10 6 8.3032 4.0803 -0.3204 11 6 8.7029 5.3565 -0.6654 12 6 8.7615 6.3498 0.3034 13 8 9.1588 7.6039 -0.0316 14 6 9.0832 8.5470 0.9291 15 1 8.7971 8.2728 1.9337 16 6 9.3728 9.8689 0.6272 17 7 9.7209 10.2031 -0.5968 18 14 9.2674 11.1756 1.9578 19 1 8.8568 10.5460 3.2385 20 1 10.5953 11.8187 2.1264 21 1 8.2669 12.2009 1.5666 22 6 8.4122 6.0576 1.6155 23 6 8.0084 4.7810 1.9530 24 6 5.6109 2.8793 -0.0668 25 6 4.0816 2.8802 -0.1264 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9564 -0.8900 33 1 3.9339 0.8515 -0.8412 34 1 3.7581 -0.1984 1.3846 35 1 3.6878 1.4071 2.1516 36 1 6.0081 0.3178 0.4934 37 1 5.9810 0.4816 2.2653 38 1 7.7823 2.1983 2.3930 39 1 7.9976 1.6791 0.7041 40 1 8.2620 3.3062 -1.0723 41 1 8.9739 5.5805 -1.6865 42 1 9.9232 11.1279 -0.8081 43 1 8.4571 6.8279 2.3711 44 1 7.7363 4.5532 2.9730 45 1 5.9778 3.9030 -0.1417 46 1 6.0060 2.2904 -0.8945 47 1 3.6859 3.4803 0.6929 48 1 3.7547 3.3016 -1.0771 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137119628.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:34:35 Heat of formation + Delta-G solvation = -41.847655 kcal Electronic energy + Delta-G solvation = -24481.333193 eV Core-core repulsion = 21113.969536 eV Total energy + Delta-G solvation = -3367.363657 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.02876 -40.11465 -38.40701 -36.53487 -34.36906 -33.60192 -31.94647 -31.75633 -30.86377 -28.37065 -27.35328 -25.57840 -24.29042 -23.55446 -23.14804 -22.02583 -21.34522 -20.52998 -19.83093 -18.82265 -17.00999 -16.54160 -16.48589 -16.23252 -16.01302 -15.52831 -15.49765 -15.20785 -15.12972 -14.90812 -14.62697 -14.43755 -14.31745 -13.98029 -13.68508 -13.53683 -13.23468 -12.92999 -12.78601 -12.70381 -12.63476 -12.37523 -12.27233 -12.14347 -12.10884 -11.99335 -11.87014 -11.53782 -11.40996 -11.17125 -11.00670 -10.87539 -10.78393 -9.76528 -9.22798 -8.83957 -8.47662 -6.15545 0.58838 0.66705 1.34770 1.42857 1.53134 2.17343 2.74813 3.05332 3.32028 3.51185 3.78008 3.86648 3.93366 3.99768 4.06170 4.18677 4.27697 4.34065 4.39295 4.41090 4.50116 4.56346 4.59131 4.67835 4.71279 4.73843 4.81577 4.83798 4.87652 4.95679 5.01926 5.08096 5.08817 5.13498 5.16145 5.16890 5.26882 5.28587 5.29674 5.37501 5.42705 5.52288 5.56386 5.62138 5.71572 5.81623 6.02838 6.17706 6.21431 6.33413 6.97293 7.78102 8.75778 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.021596 B = 0.002641 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.241131 B =10600.137524 C =11114.451834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C -0.110 4.110 4 C -0.083 4.083 5 C -0.105 4.105 6 C 0.054 3.946 7 N -0.542 5.542 8 C 0.115 3.885 9 C -0.157 4.157 10 C -0.058 4.058 11 C -0.204 4.204 12 C 0.115 3.885 13 O -0.233 6.233 14 C -0.412 4.412 15 H 0.101 0.899 16 C -0.024 4.024 17 N -0.921 5.921 18 Si 1.019 2.981 19 H -0.252 1.252 20 H -0.268 1.268 21 H -0.268 1.268 22 C -0.243 4.243 23 C -0.050 4.050 24 C 0.055 3.945 25 C -0.110 4.110 26 H 0.051 0.949 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.062 0.938 36 H 0.034 0.966 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.046 0.954 40 H 0.138 0.862 41 H 0.112 0.888 42 H 0.272 0.728 43 H 0.117 0.883 44 H 0.136 0.864 45 H 0.059 0.941 46 H 0.031 0.969 47 H 0.057 0.943 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.865 -21.699 4.225 26.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.148 4.148 4 C -0.101 4.101 5 C -0.143 4.143 6 C -0.074 4.074 7 N -0.267 5.267 8 C -0.012 4.012 9 C -0.157 4.157 10 C -0.076 4.076 11 C -0.223 4.223 12 C 0.065 3.935 13 O -0.139 6.139 14 C -0.488 4.488 15 H 0.118 0.882 16 C -0.221 4.221 17 N -0.559 5.559 18 Si 0.838 3.162 19 H -0.175 1.175 20 H -0.193 1.193 21 H -0.193 1.193 22 C -0.262 4.262 23 C -0.069 4.069 24 C -0.073 4.073 25 C -0.148 4.148 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.080 0.920 36 H 0.052 0.948 37 H 0.101 0.899 38 H 0.108 0.892 39 H 0.065 0.935 40 H 0.156 0.844 41 H 0.130 0.870 42 H 0.081 0.919 43 H 0.135 0.865 44 H 0.154 0.846 45 H 0.078 0.922 46 H 0.049 0.951 47 H 0.076 0.924 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.944 -21.190 4.285 25.725 hybrid contribution 0.684 0.812 -0.518 1.182 sum -13.260 -20.377 3.767 24.602 Atomic orbital electron populations 1.21786 0.95790 1.01843 1.01687 1.21553 0.95885 0.96326 1.02245 1.21603 0.94127 0.97328 1.01738 1.21177 0.95517 0.95301 0.98132 1.21641 0.93868 1.01402 0.97355 1.22173 0.96453 0.87468 1.01260 1.62054 1.11816 1.18596 1.34221 1.20853 0.87132 0.91414 1.01801 1.19566 1.06412 0.96570 0.93199 1.20819 0.96194 0.94307 0.96301 1.20400 1.10453 0.93276 0.98156 1.19920 0.93205 0.86121 0.94293 1.83942 1.74595 1.15089 1.40292 1.21848 1.48708 0.87038 0.91183 0.88177 1.26594 0.95870 0.99343 1.00329 1.70193 1.45165 1.19519 1.21044 0.84527 0.78656 0.76395 0.76617 1.17517 1.19273 1.19331 1.21241 1.10202 0.99022 0.95723 1.20888 0.95327 0.90913 0.99762 1.22095 0.95981 0.99455 0.89731 1.21625 0.94163 0.97508 1.01497 0.93012 0.92247 0.92865 0.92072 0.91364 0.92338 0.92394 0.91527 0.89823 0.91960 0.94807 0.89863 0.89211 0.93547 0.84378 0.87022 0.91853 0.86511 0.84577 0.92226 0.95101 0.92431 0.91754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.91 71.98 0.71 -1.04 16 2 C -0.12 -1.49 5.70 30.59 0.17 -1.32 16 3 C -0.11 -1.63 4.69 30.59 0.14 -1.49 16 4 C -0.08 -1.38 2.25 -10.72 -0.02 -1.41 16 5 C -0.11 -1.64 5.08 30.65 0.16 -1.49 16 6 C 0.05 0.95 5.42 86.33 0.47 1.42 16 7 N -0.54 -12.59 4.80 -900.92 -4.32 -16.92 16 8 C 0.11 2.74 5.43 85.56 0.46 3.21 16 9 C -0.16 -4.94 4.12 -19.83 -0.08 -5.02 16 10 C -0.06 -1.95 7.80 22.25 0.17 -1.78 16 11 C -0.20 -8.78 9.99 22.39 0.22 -8.56 16 12 C 0.12 5.82 6.65 22.58 0.15 5.97 16 13 O -0.23 -14.21 9.76 -22.80 -0.22 -14.43 16 14 C -0.41 -24.32 9.49 67.92 0.64 -23.67 16 15 H 0.10 5.46 5.20 -2.91 -0.02 5.45 16 16 C -0.02 -1.39 5.49 84.83 0.47 -0.92 16 17 N -0.92 -57.11 13.67 21.61 0.30 -56.81 16 18 Si 1.02 43.43 29.55 68.60 2.03 45.46 16 19 H -0.25 -9.94 7.11 99.48 0.71 -9.24 16 20 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 21 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 22 C -0.24 -10.79 9.17 22.39 0.21 -10.58 16 23 C -0.05 -1.79 9.69 22.25 0.22 -1.57 16 24 C 0.06 1.38 4.58 86.33 0.40 1.77 16 25 C -0.11 -2.39 5.38 30.65 0.16 -2.22 16 26 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.07 0.77 6.64 -2.39 -0.02 0.75 16 31 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 34 H 0.08 1.01 6.71 -2.39 -0.02 1.00 16 35 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.08 1.29 8.12 -2.39 -0.02 1.27 16 38 H 0.09 1.93 8.08 -2.39 -0.02 1.91 16 39 H 0.05 1.01 8.02 -2.39 -0.02 0.99 16 40 H 0.14 3.80 8.06 -2.91 -0.02 3.78 16 41 H 0.11 4.79 8.06 -2.91 -0.02 4.76 16 42 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 43 H 0.12 5.31 5.64 -2.91 -0.02 5.30 16 44 H 0.14 4.06 8.06 -2.91 -0.02 4.03 16 45 H 0.06 1.85 5.65 -2.39 -0.01 1.84 16 46 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 48 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -68.37 374.19 3.34 -65.03 By element: Atomic # 1 Polarization: 25.46 SS G_CDS: 0.91 Total: 26.37 kcal Atomic # 6 Polarization: -53.35 SS G_CDS: 4.65 Total: -48.70 kcal Atomic # 7 Polarization: -69.70 SS G_CDS: -4.03 Total: -73.73 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: -0.22 Total: -14.43 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -68.37 3.34 -65.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137119628.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.180 kcal (2) G-P(sol) polarization free energy of solvation -68.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds