Wall clock time and date at job start Tue Mar 31 2020 07:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35895 * 116.99949 * 2 1 4 4 C 1.38758 * 120.05722 * 359.97438 * 3 2 1 5 5 C 1.38118 * 119.94371 * 180.02562 * 4 3 2 6 6 C 1.50702 * 119.97298 * 180.02562 * 5 4 3 7 7 N 1.46901 * 109.47140 * 264.22013 * 6 5 4 8 8 C 1.46895 * 111.00174 * 199.98051 * 7 6 5 9 9 C 1.50697 * 109.47135 * 178.62647 * 8 7 6 10 10 H 1.07996 * 120.00528 * 354.00036 * 9 8 7 11 11 C 1.37877 * 120.00042 * 173.99939 * 9 8 7 12 12 N 1.31514 * 120.00147 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00339 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47012 * 59.99685 * 13 11 9 15 15 H 1.48497 * 109.47198 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.47083 * 299.99959 * 13 11 9 17 17 C 1.46895 * 111.00229 * 76.02309 * 7 6 5 18 18 C 1.54269 * 110.03689 * 217.89142 * 17 7 6 19 19 C 1.54964 * 104.16134 * 217.13533 * 18 17 7 20 20 C 1.54890 * 102.77348 * 37.89023 * 19 18 17 21 21 C 1.53880 * 110.03095 * 100.67471 * 17 7 6 22 22 C 1.38289 * 120.06045 * 0.02819 * 5 4 3 23 23 C 1.38246 * 120.10733 * 0.24650 * 22 5 4 24 24 C 1.38170 * 120.05729 * 359.45269 * 23 22 5 25 25 C 1.50703 * 120.02907 * 180.24999 * 24 23 22 26 26 H 1.09004 * 109.47290 * 299.99759 * 1 2 3 27 27 H 1.09004 * 109.47308 * 60.00233 * 1 2 3 28 28 H 1.09002 * 109.47312 * 179.97438 * 1 2 3 29 29 H 1.07996 * 120.02321 * 0.04891 * 4 3 2 30 30 H 1.08998 * 109.47122 * 24.21686 * 6 5 4 31 31 H 1.08993 * 109.47277 * 144.21805 * 6 5 4 32 32 H 1.08999 * 109.47344 * 298.63083 * 8 7 6 33 33 H 1.09004 * 109.47320 * 58.62979 * 8 7 6 34 34 H 0.97004 * 120.00465 * 180.02562 * 12 11 9 35 35 H 1.09002 * 110.01793 * 339.28751 * 17 7 6 36 36 H 1.08992 * 110.48174 * 335.78816 * 18 17 7 37 37 H 1.09003 * 110.48559 * 98.42831 * 18 17 7 38 38 H 1.08995 * 110.72471 * 279.57366 * 19 18 17 39 39 H 1.08999 * 110.91722 * 156.29382 * 19 18 17 40 40 H 1.09001 * 110.48144 * 203.39665 * 20 19 18 41 41 H 1.09000 * 110.60047 * 80.81596 * 20 19 18 42 42 H 1.09002 * 110.02932 * 238.57121 * 21 17 7 43 43 H 1.08998 * 110.03138 * 359.95002 * 21 17 7 44 44 H 1.07998 * 119.94789 * 179.97438 * 22 5 4 45 45 H 1.08004 * 119.97142 * 179.70166 * 23 22 5 46 46 H 1.09008 * 109.46701 * 270.32078 * 25 24 23 47 47 H 1.08991 * 109.47301 * 30.31865 * 25 24 23 48 48 H 1.08992 * 109.47106 * 150.32449 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9208 3.6047 -0.0011 6 6 1.1019 4.8698 -0.0011 7 7 0.9524 5.3564 -1.3791 8 6 0.5938 6.7807 -1.3985 9 6 0.4824 7.2513 -2.8258 10 1 0.7539 6.5899 -3.6352 11 6 0.0340 8.5263 -3.0984 12 7 -0.2961 9.3320 -2.1127 13 14 -0.1047 9.1094 -4.8676 14 1 -1.0484 8.2318 -5.6054 15 1 -0.6067 10.5068 -4.8903 16 1 1.2314 9.0534 -5.5134 17 6 -0.0337 4.5551 -2.1162 18 6 0.4278 4.3604 -3.5753 19 6 -0.8823 4.4302 -4.3999 20 6 -1.6890 5.5318 -3.6686 21 6 -1.3793 5.2993 -2.1754 22 6 3.3018 3.6758 -0.0017 23 6 4.0559 2.5171 -0.0069 24 6 3.4311 1.2848 -0.0001 25 6 4.2537 0.0221 0.0000 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 0.2127 2.3203 -0.0002 30 1 0.1179 4.6657 0.4209 31 1 1.6045 5.6280 0.5994 32 1 -0.3620 6.9217 -0.8938 33 1 1.3641 7.3564 -0.8852 34 1 -0.6120 10.2289 -2.3045 35 1 -0.1637 3.5866 -1.6333 36 1 1.1073 5.1599 -3.8703 37 1 0.9052 3.3881 -3.6979 38 1 -1.4107 3.4775 -4.3659 39 1 -0.6784 4.7206 -5.4306 40 1 -2.7556 5.4141 -3.8600 41 1 -1.3539 6.5218 -3.9780 42 1 -2.1623 4.6916 -1.7219 43 1 -1.3008 6.2546 -1.6564 44 1 3.7921 4.6381 -0.0025 45 1 5.1343 2.5752 -0.0122 46 1 4.4520 -0.2823 -1.0278 47 1 5.1977 0.2035 0.5136 48 1 3.7064 -0.7681 0.5138 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140159419.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:16 Heat of formation + Delta-G solvation = -13.326612 kcal Electronic energy + Delta-G solvation = -26105.725157 eV Core-core repulsion = 22739.598265 eV Total energy + Delta-G solvation = -3366.126892 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.30205 -40.27791 -38.40798 -36.00565 -34.80841 -33.52939 -31.05229 -30.04084 -29.33336 -28.84196 -28.38915 -27.06176 -24.86558 -23.62723 -23.10416 -21.85599 -21.36325 -19.82920 -18.64055 -18.10991 -17.32410 -16.98382 -16.76827 -16.62724 -16.40333 -16.16544 -15.38905 -15.24090 -14.81933 -14.60905 -14.46031 -14.30654 -13.98351 -13.76913 -13.34876 -13.09779 -12.93864 -12.91617 -12.77155 -12.65418 -12.64104 -12.36223 -12.15852 -12.07245 -11.89967 -11.78704 -11.71214 -11.62150 -11.54734 -11.21861 -10.87216 -10.64188 -10.39733 -9.62583 -8.96048 -8.82730 -8.09072 -6.09612 0.40409 0.56806 1.42638 1.43683 1.49786 2.42193 2.45235 2.78893 3.25777 3.44632 3.80315 3.87258 3.98610 4.01294 4.11102 4.25672 4.29965 4.36016 4.38482 4.44016 4.59821 4.63773 4.68327 4.73148 4.75577 4.79214 4.83490 4.86364 4.90611 4.96850 5.00670 5.02784 5.12927 5.21499 5.23565 5.30485 5.34864 5.37205 5.43327 5.54194 5.61428 5.74797 5.79827 5.88180 5.92389 5.95010 6.20752 6.45232 6.49253 6.76116 7.04533 7.54372 9.02690 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.020063 B = 0.004227 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.283641 B = 6622.694627 C = 7163.450456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.325 6.325 3 C 0.113 3.887 4 C -0.202 4.202 5 C -0.040 4.040 6 C 0.090 3.910 7 N -0.529 5.529 8 C 0.202 3.798 9 C -0.493 4.493 10 H 0.084 0.916 11 C 0.011 3.989 12 N -0.937 5.937 13 Si 0.935 3.065 14 H -0.261 1.261 15 H -0.293 1.293 16 H -0.274 1.274 17 C 0.100 3.900 18 C -0.107 4.107 19 C -0.114 4.114 20 C -0.119 4.119 21 C -0.154 4.154 22 C -0.143 4.143 23 C -0.084 4.084 24 C -0.134 4.134 25 C -0.097 4.097 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.123 0.877 29 H 0.128 0.872 30 H 0.034 0.966 31 H 0.068 0.932 32 H -0.013 1.013 33 H -0.006 1.006 34 H 0.258 0.742 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.057 0.943 38 H 0.075 0.925 39 H 0.061 0.939 40 H 0.053 0.947 41 H 0.062 0.938 42 H 0.047 0.953 43 H 0.074 0.926 44 H 0.120 0.880 45 H 0.150 0.850 46 H 0.070 0.930 47 H 0.080 0.920 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.748 -18.563 3.187 19.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.239 6.239 3 C 0.068 3.932 4 C -0.221 4.221 5 C -0.041 4.041 6 C -0.038 4.038 7 N -0.252 5.252 8 C 0.076 3.924 9 C -0.531 4.531 10 H 0.102 0.898 11 C -0.186 4.186 12 N -0.579 5.579 13 Si 0.762 3.238 14 H -0.185 1.185 15 H -0.219 1.219 16 H -0.199 1.199 17 C -0.008 4.008 18 C -0.145 4.145 19 C -0.151 4.151 20 C -0.157 4.157 21 C -0.192 4.192 22 C -0.162 4.162 23 C -0.101 4.101 24 C -0.135 4.135 25 C -0.154 4.154 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.141 0.859 29 H 0.146 0.854 30 H 0.052 0.948 31 H 0.087 0.913 32 H 0.005 0.995 33 H 0.012 0.988 34 H 0.067 0.933 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.093 0.907 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.066 0.934 43 H 0.092 0.908 44 H 0.138 0.862 45 H 0.168 0.832 46 H 0.089 0.911 47 H 0.099 0.901 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.209 -18.632 2.995 19.142 hybrid contribution -1.361 1.487 -0.202 2.026 sum 1.848 -17.145 2.792 17.469 Atomic orbital electron populations 1.23265 0.77161 1.05374 1.01625 1.86003 1.22674 1.26384 1.88853 1.18913 0.92265 0.84144 0.97854 1.21130 0.99991 0.91739 1.09242 1.19578 0.94288 0.93413 0.96772 1.21018 0.97234 0.94293 0.91220 1.62301 1.47334 1.03946 1.11641 1.19630 0.92558 0.83354 0.96830 1.21674 1.40545 0.97845 0.93052 0.89847 1.25575 0.96072 0.97095 0.99852 1.70067 1.47048 1.07947 1.32814 0.85962 0.78793 0.77208 0.81852 1.18548 1.21876 1.19908 1.22110 0.89316 0.94523 0.94858 1.22511 0.97461 1.00396 0.94130 1.22415 0.95979 0.98482 0.98264 1.22363 0.98272 0.99998 0.95028 1.22820 0.96645 1.01499 0.98261 1.21031 0.93186 0.99041 1.02965 1.21093 1.00730 0.90383 0.97937 1.19563 0.90699 0.97142 1.06085 1.20580 0.98902 0.93289 1.02585 0.92409 0.92780 0.85854 0.85405 0.94807 0.91330 0.99546 0.98817 0.93344 0.91535 0.91596 0.92417 0.90650 0.92054 0.92843 0.91964 0.93411 0.90831 0.86203 0.83197 0.91140 0.90131 0.91586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.81 113.37 1.11 1.46 16 2 O -0.33 -7.76 9.54 -92.37 -0.88 -8.65 16 3 C 0.11 3.06 6.66 22.51 0.15 3.21 16 4 C -0.20 -5.80 7.58 22.37 0.17 -5.63 16 5 C -0.04 -1.27 5.13 -19.88 -0.10 -1.37 16 6 C 0.09 3.27 5.02 85.56 0.43 3.70 16 7 N -0.53 -22.09 4.36 -875.83 -3.82 -25.91 16 8 C 0.20 10.19 4.16 85.56 0.36 10.55 16 9 C -0.49 -25.79 5.23 25.60 0.13 -25.65 16 10 H 0.08 4.26 3.92 -2.91 -0.01 4.25 16 11 C 0.01 0.61 5.14 84.65 0.43 1.04 16 12 N -0.94 -54.81 13.29 21.45 0.28 -54.53 16 13 Si 0.94 43.15 28.51 68.60 1.96 45.11 16 14 H -0.26 -11.39 7.09 99.48 0.70 -10.69 16 15 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 16 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 17 C 0.10 3.79 2.72 45.64 0.12 3.92 16 18 C -0.11 -3.91 5.88 31.70 0.19 -3.73 16 19 C -0.11 -3.75 6.90 31.91 0.22 -3.53 16 20 C -0.12 -4.58 6.17 31.67 0.20 -4.38 16 21 C -0.15 -6.15 5.63 31.32 0.18 -5.97 16 22 C -0.14 -4.29 9.72 22.28 0.22 -4.07 16 23 C -0.08 -2.10 9.70 22.26 0.22 -1.88 16 24 C -0.13 -3.35 5.89 -19.77 -0.12 -3.47 16 25 C -0.10 -1.83 9.79 71.24 0.70 -1.13 16 26 H 0.06 0.94 7.66 -2.39 -0.02 0.92 16 27 H 0.05 0.95 7.66 -2.38 -0.02 0.93 16 28 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.13 3.40 5.69 -2.91 -0.02 3.38 16 30 H 0.03 1.19 7.90 -2.39 -0.02 1.18 16 31 H 0.07 2.55 7.84 -2.39 -0.02 2.53 16 32 H -0.01 -0.69 5.83 -2.39 -0.01 -0.71 16 33 H -0.01 -0.34 8.04 -2.39 -0.02 -0.36 16 34 H 0.26 14.54 8.31 -92.71 -0.77 13.76 16 35 H 0.07 2.29 5.74 -2.39 -0.01 2.28 16 36 H 0.07 2.79 5.39 -2.39 -0.01 2.78 16 37 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.06 2.80 4.68 -2.39 -0.01 2.79 16 42 H 0.05 1.68 8.14 -2.39 -0.02 1.67 16 43 H 0.07 3.55 3.99 -2.39 -0.01 3.54 16 44 H 0.12 3.59 8.06 -2.91 -0.02 3.57 16 45 H 0.15 2.88 8.06 -2.91 -0.02 2.85 16 46 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 47 H 0.08 1.20 8.09 -2.39 -0.02 1.18 16 48 H 0.07 1.25 7.53 -2.39 -0.02 1.23 16 Total: -1.00 -61.15 359.52 3.08 -58.07 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: 0.95 Total: 22.85 kcal Atomic # 6 Polarization: -41.54 SS G_CDS: 4.60 Total: -36.94 kcal Atomic # 7 Polarization: -76.90 SS G_CDS: -3.54 Total: -80.44 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: -0.88 Total: -8.65 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 1.96 Total: 45.11 kcal Total: -61.15 3.08 -58.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140159419.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.742 kcal (2) G-P(sol) polarization free energy of solvation -61.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds