Wall clock time and date at job start Tue Mar 31 2020 07:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35901 * 116.99975 * 2 1 4 4 C 1.38755 * 120.05742 * 0.02706 * 3 2 1 5 5 C 1.38122 * 119.94391 * 179.97438 * 4 3 2 6 6 C 1.50701 * 119.96726 * 179.97438 * 5 4 3 7 7 C 1.38290 * 120.05586 * 359.74453 * 5 4 3 8 8 C 1.38244 * 120.11066 * 0.50910 * 7 5 4 9 9 C 1.50701 * 119.97054 * 179.76390 * 8 7 5 10 10 N 1.46898 * 109.47402 * 269.72780 * 9 8 7 11 11 C 1.46893 * 111.00077 * 190.00346 * 10 9 8 12 12 C 1.50697 * 109.47587 * 162.40966 * 11 10 9 13 13 H 1.08010 * 119.99483 * 354.34589 * 12 11 10 14 14 C 1.37872 * 120.00487 * 174.35486 * 12 11 10 15 15 N 1.31514 * 119.99758 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00122 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47281 * 59.99614 * 16 14 12 18 18 H 1.48501 * 109.47015 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47070 * 299.99279 * 16 14 12 20 20 C 1.46901 * 111.00231 * 66.04041 * 10 9 8 21 21 C 1.54898 * 110.47883 * 100.92214 * 20 10 9 22 22 C 1.55238 * 102.58408 * 156.67829 * 21 20 10 23 23 C 1.54275 * 104.23193 * 322.08475 * 22 21 20 24 24 C 1.53876 * 106.59880 * 23.61240 * 23 22 21 25 25 C 1.38163 * 120.05483 * 359.49245 * 8 7 5 26 26 H 1.09001 * 109.46943 * 299.99825 * 1 2 3 27 27 H 1.09000 * 109.47096 * 59.99200 * 1 2 3 28 28 H 1.08999 * 109.47011 * 179.97438 * 1 2 3 29 29 H 1.08004 * 120.02660 * 359.95340 * 4 3 2 30 30 H 1.09000 * 109.47362 * 90.00606 * 6 5 4 31 31 H 1.09002 * 109.47103 * 209.99743 * 6 5 4 32 32 H 1.08999 * 109.47652 * 329.99774 * 6 5 4 33 33 H 1.08001 * 119.94252 * 180.27752 * 7 5 4 34 34 H 1.08999 * 109.46562 * 149.72166 * 9 8 7 35 35 H 1.08997 * 109.46597 * 29.72505 * 9 8 7 36 36 H 1.09002 * 109.47272 * 282.40842 * 11 10 9 37 37 H 1.09004 * 109.47360 * 42.40234 * 11 10 9 38 38 H 0.97002 * 119.99781 * 180.02562 * 15 14 12 39 39 H 1.08998 * 110.43257 * 338.38791 * 20 10 9 40 40 H 1.08999 * 110.75793 * 275.06490 * 21 20 10 41 41 H 1.08999 * 110.75822 * 38.44534 * 21 20 10 42 42 H 1.08997 * 110.46956 * 203.39968 * 22 21 20 43 43 H 1.09001 * 110.58224 * 80.82747 * 22 21 20 44 44 H 1.08996 * 110.02973 * 264.32778 * 23 22 21 45 45 H 1.09000 * 110.06913 * 142.91633 * 23 22 21 46 46 H 1.08999 * 110.03340 * 240.71829 * 24 23 22 47 47 H 1.08992 * 110.03181 * 119.28422 * 24 23 22 48 48 H 1.08004 * 120.02648 * 180.23156 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0006 5 6 1.9209 3.6048 0.0011 6 6 1.1019 4.8698 0.0011 7 6 3.3020 3.6758 0.0064 8 6 4.0560 2.5171 0.0006 9 6 5.5608 2.5982 0.0010 10 7 6.0502 2.6249 -1.3838 11 6 7.5097 2.4650 -1.4296 12 6 7.9282 2.0674 -2.8216 13 1 7.1795 1.8566 -3.5710 14 6 9.2666 1.9724 -3.1384 15 7 10.1782 2.2293 -2.2260 16 14 9.7853 1.4787 -4.8638 17 1 9.2542 2.4628 -5.8409 18 1 11.2678 1.4508 -4.9461 19 1 9.2463 0.1307 -5.1761 20 6 5.6340 3.8578 -2.0656 21 6 6.8029 4.8730 -2.1112 22 6 6.4242 5.7709 -3.3195 23 6 5.8195 4.7905 -4.3458 24 6 5.3171 3.5741 -3.5484 25 6 3.4311 1.2848 0.0000 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 0.2128 2.3204 0.0002 30 1 0.9042 5.1746 1.0288 31 1 1.6518 5.6586 -0.5123 32 1 0.1576 4.6914 -0.5131 33 1 3.7923 4.6381 0.0113 34 1 5.9713 1.7289 0.5148 35 1 5.8755 3.5063 0.5151 36 1 7.9871 3.4077 -1.1621 37 1 7.8128 1.6914 -0.7240 38 1 11.1199 2.1628 -2.4490 39 1 4.7686 4.2946 -1.5672 40 1 6.8441 5.4563 -1.1913 41 1 7.7500 4.3639 -2.2899 42 1 7.3118 6.2527 -3.7295 43 1 5.6870 6.5181 -3.0255 44 1 6.5823 4.4798 -5.0597 45 1 4.9883 5.2628 -4.8695 46 1 5.8360 2.6731 -3.8754 47 1 4.2421 3.4565 -3.6846 48 1 4.0207 0.3799 -0.0008 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143158020.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:24 Heat of formation + Delta-G solvation = -8.076464 kcal Electronic energy + Delta-G solvation = -25795.415874 eV Core-core repulsion = 22429.516646 eV Total energy + Delta-G solvation = -3365.899228 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.14837 -38.64959 -37.38799 -34.64843 -32.99654 -32.11982 -30.34453 -27.97922 -27.89331 -27.27197 -27.16365 -26.23863 -24.00241 -22.00494 -21.57561 -20.37856 -19.62692 -18.35647 -17.38232 -16.38845 -16.25714 -15.85123 -15.72324 -15.21226 -15.00935 -14.43414 -14.00301 -13.91298 -13.55835 -13.48221 -12.99049 -12.98291 -12.55031 -12.42942 -12.17772 -12.13602 -11.92050 -11.66430 -11.43166 -11.10602 -10.93096 -10.88636 -10.71070 -10.64952 -10.52081 -10.45340 -10.24180 -10.22734 -10.03473 -9.48739 -9.21270 -8.91382 -8.47627 -8.34705 -7.96511 -7.08773 -5.97710 -3.97378 1.51644 1.63460 3.32486 3.36158 3.40341 3.43559 3.89706 4.47198 4.77669 4.90988 5.01341 5.05370 5.07241 5.14605 5.35954 5.36487 5.41302 5.42497 5.46422 5.49986 5.55794 5.62778 5.70244 5.73150 5.82498 5.97891 6.11547 6.22013 6.27097 6.28218 6.33734 6.34445 6.46207 6.49797 6.59131 6.65498 6.67368 6.75968 6.87535 6.98058 7.03615 7.10812 7.18938 7.42478 7.53201 7.54359 7.97623 8.19290 8.27539 8.60764 9.11576 9.65983 11.12314 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.015988 B = 0.004299 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.940503 B = 6511.012322 C = 7271.422882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.318 6.318 3 C 0.125 3.875 4 C -0.217 4.217 5 C -0.053 4.053 6 C -0.112 4.112 7 C -0.151 4.151 8 C -0.017 4.017 9 C 0.088 3.912 10 N -0.523 5.523 11 C 0.181 3.819 12 C -0.496 4.496 13 H 0.069 0.931 14 C 0.056 3.944 15 N -0.900 5.900 16 Si 0.890 3.110 17 H -0.277 1.277 18 H -0.290 1.290 19 H -0.277 1.277 20 C 0.089 3.911 21 C -0.164 4.164 22 C -0.116 4.116 23 C -0.118 4.118 24 C -0.113 4.113 25 C -0.134 4.134 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.096 0.904 29 H 0.121 0.879 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.120 0.880 34 H 0.079 0.921 35 H 0.034 0.966 36 H 0.017 0.983 37 H 0.020 0.980 38 H 0.260 0.740 39 H 0.064 0.936 40 H 0.042 0.958 41 H 0.123 0.877 42 H 0.055 0.945 43 H 0.048 0.952 44 H 0.060 0.940 45 H 0.046 0.954 46 H 0.092 0.908 47 H 0.041 0.959 48 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.676 3.646 4.538 18.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.232 6.232 3 C 0.080 3.920 4 C -0.236 4.236 5 C -0.053 4.053 6 C -0.169 4.169 7 C -0.169 4.169 8 C -0.018 4.018 9 C -0.040 4.040 10 N -0.246 5.246 11 C 0.057 3.943 12 C -0.534 4.534 13 H 0.087 0.913 14 C -0.145 4.145 15 N -0.541 5.541 16 Si 0.718 3.282 17 H -0.203 1.203 18 H -0.215 1.215 19 H -0.203 1.203 20 C -0.020 4.020 21 C -0.203 4.203 22 C -0.154 4.154 23 C -0.156 4.156 24 C -0.151 4.151 25 C -0.153 4.153 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.114 0.886 29 H 0.139 0.861 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.138 0.862 34 H 0.097 0.903 35 H 0.052 0.948 36 H 0.034 0.966 37 H 0.038 0.962 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.061 0.939 41 H 0.140 0.860 42 H 0.073 0.927 43 H 0.067 0.933 44 H 0.079 0.921 45 H 0.065 0.935 46 H 0.111 0.889 47 H 0.060 0.940 48 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -17.590 3.043 4.320 18.367 hybrid contribution 0.451 0.551 -0.549 0.899 sum -17.139 3.594 3.771 17.913 Atomic orbital electron populations 1.22982 0.79000 1.03509 1.01060 1.86080 1.20880 1.27244 1.88986 1.18975 0.92305 0.83786 0.96900 1.20941 0.99299 0.91940 1.11446 1.19572 0.93794 0.94278 0.97695 1.20771 0.99174 0.94888 1.02051 1.20857 0.92813 0.98121 1.05151 1.19739 0.96030 0.91760 0.94222 1.21071 0.89319 1.00875 0.92705 1.62294 1.16639 1.34844 1.10859 1.20046 0.80037 0.96416 0.97818 1.21222 0.91198 1.44712 0.96270 0.91292 1.24944 0.96695 0.95875 0.96979 1.69942 1.00703 1.50052 1.33357 0.86681 0.77196 0.79243 0.85065 1.20265 1.21531 1.20273 1.22434 0.95897 0.88774 0.94878 1.23486 1.03569 0.97159 0.96045 1.22247 0.99183 0.97180 0.96833 1.22032 0.99232 0.96316 0.97981 1.22261 0.98842 0.99386 0.94569 1.20288 0.90798 0.98618 1.05603 0.92988 0.92884 0.88570 0.86128 0.91333 0.91404 0.91881 0.86241 0.90301 0.94829 0.96592 0.96154 0.93020 0.91818 0.93931 0.85953 0.92662 0.93342 0.92104 0.93524 0.88933 0.94009 0.85124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.32 -4.39 10.50 -19.43 -0.20 -4.59 16 3 C 0.13 1.85 6.69 -39.21 -0.26 1.59 16 4 C -0.22 -2.83 8.69 -39.43 -0.34 -3.17 16 5 C -0.05 -0.69 5.88 -104.64 -0.62 -1.31 16 6 C -0.11 -1.10 10.01 36.01 0.36 -0.74 16 7 C -0.15 -2.21 7.74 -39.56 -0.31 -2.52 16 8 C -0.02 -0.27 5.02 -104.65 -0.53 -0.80 16 9 C 0.09 1.60 5.07 -4.98 -0.03 1.57 16 10 N -0.52 -10.96 4.34 -227.53 -0.99 -11.95 16 11 C 0.18 4.48 4.27 -4.98 -0.02 4.46 16 12 C -0.50 -13.20 7.41 -34.44 -0.26 -13.45 16 13 H 0.07 1.85 5.20 -52.48 -0.27 1.57 16 14 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 15 N -0.90 -25.93 13.29 55.43 0.74 -25.19 16 16 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 C 0.09 1.71 2.69 -66.05 -0.18 1.53 16 21 C -0.16 -3.23 5.28 -24.54 -0.13 -3.36 16 22 C -0.12 -2.00 6.84 -24.88 -0.17 -2.17 16 23 C -0.12 -2.06 6.80 -25.61 -0.17 -2.24 16 24 C -0.11 -2.17 6.17 -25.61 -0.16 -2.33 16 25 C -0.13 -2.18 9.64 -39.43 -0.38 -2.56 16 26 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 27 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 28 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.12 1.26 6.30 -52.48 -0.33 0.93 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 32 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 33 H 0.12 1.67 7.18 -52.49 -0.38 1.29 16 34 H 0.08 1.42 7.79 -51.93 -0.40 1.02 16 35 H 0.03 0.59 8.06 -51.93 -0.42 0.17 16 36 H 0.02 0.43 5.38 -51.93 -0.28 0.15 16 37 H 0.02 0.55 7.78 -51.93 -0.40 0.14 16 38 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 39 H 0.06 1.14 4.65 -51.93 -0.24 0.89 16 40 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.12 2.90 4.53 -51.93 -0.24 2.67 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 45 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.09 2.03 5.08 -51.93 -0.26 1.77 16 47 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.13 2.16 8.06 -52.48 -0.42 1.73 16 LS Contribution 367.40 15.07 5.54 5.54 Total: -1.00 -29.06 367.40 -10.03 -39.09 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -7.80 Total: 3.54 kcal Atomic # 6 Polarization: -20.52 SS G_CDS: -2.29 Total: -22.80 kcal Atomic # 7 Polarization: -36.89 SS G_CDS: -0.25 Total: -37.14 kcal Atomic # 8 Polarization: -4.39 SS G_CDS: -0.20 Total: -4.59 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.06 -10.03 -39.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143158020.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.011 kcal (2) G-P(sol) polarization free energy of solvation -29.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds