Wall clock time and date at job start Tue Mar 31 2020 07:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38163 * 120.02300 * 2 1 4 4 C 1.38249 * 120.04911 * 179.97438 * 3 2 1 5 5 C 1.38287 * 120.11540 * 359.97438 * 4 3 2 6 6 C 1.38123 * 120.05533 * 0.02562 * 5 4 3 7 7 C 1.38707 * 120.02567 * 179.72032 * 2 1 3 8 8 O 1.35895 * 120.05791 * 0.02562 * 7 2 1 9 9 C 1.42898 * 116.99963 * 177.11557 * 8 7 2 10 10 H 1.09000 * 110.29337 * 321.74777 * 9 8 7 11 11 C 1.54262 * 110.32363 * 83.87598 * 9 8 7 12 12 C 1.54383 * 105.05997 * 118.89668 * 11 9 8 13 13 N 1.48551 * 104.59562 * 23.85239 * 12 11 9 14 14 C 1.46906 * 111.00135 * 200.96031 * 13 12 11 15 15 H 1.08995 * 109.46950 * 61.26633 * 14 13 12 16 16 C 1.52996 * 109.47267 * 181.27124 * 14 13 12 17 17 C 1.53000 * 109.46851 * 301.27297 * 14 13 12 18 18 C 1.53003 * 109.47009 * 175.63520 * 17 14 13 19 19 C 1.50700 * 109.46964 * 185.34711 * 18 17 14 20 20 H 1.07994 * 120.00094 * 359.97438 * 19 18 17 21 21 C 1.37881 * 119.99701 * 180.02562 * 19 18 17 22 22 N 1.31517 * 120.00145 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00061 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47419 * 89.99640 * 23 21 19 25 25 H 1.48498 * 109.47073 * 209.99943 * 23 21 19 26 26 H 1.48503 * 109.46952 * 329.99387 * 23 21 19 27 27 C 1.48720 * 104.29202 * 320.57449 * 13 12 11 28 28 H 1.08995 * 109.46765 * 89.99727 * 1 2 3 29 29 H 1.08998 * 109.46880 * 330.00193 * 1 2 3 30 30 H 1.09001 * 109.46979 * 210.00264 * 1 2 3 31 31 H 1.07994 * 119.98199 * 359.97438 * 3 2 1 32 32 H 1.08000 * 119.94337 * 179.97438 * 4 3 2 33 33 H 1.08002 * 119.97302 * 179.97438 * 5 4 3 34 34 H 1.08001 * 120.02842 * 179.97438 * 6 5 4 35 35 H 1.09001 * 110.32571 * 237.79124 * 11 9 8 36 36 H 1.09003 * 110.32181 * 359.89846 * 11 9 8 37 37 H 1.09004 * 110.41274 * 142.63802 * 12 11 9 38 38 H 1.09003 * 110.40805 * 265.07244 * 12 11 9 39 39 H 1.08999 * 109.47118 * 179.97438 * 16 14 13 40 40 H 1.09003 * 109.46863 * 299.99838 * 16 14 13 41 41 H 1.08995 * 109.47537 * 59.99868 * 16 14 13 42 42 H 1.09004 * 109.46923 * 295.62637 * 17 14 13 43 43 H 1.08996 * 109.47391 * 55.63428 * 17 14 13 44 44 H 1.09000 * 109.46861 * 305.34744 * 18 17 14 45 45 H 1.09005 * 109.47420 * 65.34434 * 18 17 14 46 46 H 0.96998 * 120.00395 * 180.02562 * 22 21 19 47 47 H 1.08998 * 110.38636 * 280.64420 * 27 13 12 48 48 H 1.08993 * 110.51436 * 158.14279 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1963 0.0000 4 6 3.5809 1.1969 0.0005 5 6 4.2753 0.0010 0.0016 6 6 3.5888 -1.1975 0.0016 7 6 2.2012 -1.2009 0.0059 8 8 1.5234 -2.3788 0.0111 9 6 2.3021 -3.5756 -0.0471 10 1 3.1530 -3.4408 -0.7149 11 6 2.7854 -3.9694 1.3639 12 6 2.1654 -5.3586 1.6271 13 7 1.9157 -5.9194 0.2743 14 6 0.9037 -6.9832 0.3240 15 1 -0.0370 -6.5729 0.6911 16 6 0.6971 -7.5565 -1.0793 17 6 1.3770 -8.0937 1.2641 18 6 0.2776 -9.1490 1.4009 19 6 0.6898 -10.1737 2.4262 20 1 1.6409 -10.0817 2.9295 21 6 -0.1469 -11.2292 2.7209 22 7 -1.3049 -11.3415 2.1076 23 14 0.3636 -12.4990 3.9923 24 1 -0.1085 -12.0734 5.3343 25 1 -0.2384 -13.8125 3.6494 26 1 1.8436 -12.6207 4.0037 27 6 1.4314 -4.7594 -0.5204 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 0.8900 0.5138 30 1 -0.3633 -0.8900 0.5139 31 1 1.6585 2.1316 -0.0004 32 1 4.1195 2.1330 0.0001 33 1 5.3553 0.0042 0.0016 34 1 4.1315 -2.1313 0.0020 35 1 3.8735 -4.0297 1.3883 36 1 2.4302 -3.2488 2.1006 37 1 2.8644 -5.9889 2.1769 38 1 1.2291 -5.2591 2.1762 39 1 -0.0534 -8.3461 -1.0424 40 1 0.3599 -6.7653 -1.7490 41 1 1.6378 -7.9668 -1.4464 42 1 2.2759 -8.5563 0.8564 43 1 1.5984 -7.6706 2.2438 44 1 -0.6485 -8.6697 1.7181 45 1 0.1225 -9.6389 0.4396 46 1 -1.8937 -12.0839 2.3151 47 1 0.3798 -4.5664 -0.3083 48 1 1.5789 -4.9377 -1.5854 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172500041.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:04 Heat of formation + Delta-G solvation = -25.222150 kcal Electronic energy + Delta-G solvation = -24510.858188 eV Core-core repulsion = 21144.215467 eV Total energy + Delta-G solvation = -3366.642721 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.70311 -39.02221 -37.30998 -34.64208 -33.06097 -32.54527 -30.32200 -30.10435 -28.69383 -27.91884 -26.93708 -25.11675 -23.35409 -22.35476 -21.67868 -21.10555 -20.39737 -19.31640 -18.16293 -16.71816 -16.25991 -16.10576 -15.87557 -15.04666 -14.75408 -14.64577 -14.40975 -14.20467 -13.79492 -13.43700 -13.37084 -13.27983 -12.98297 -12.57777 -12.48834 -12.23502 -12.12201 -12.00416 -11.72426 -11.52324 -11.41650 -11.29116 -11.03333 -11.00221 -10.86690 -10.70393 -10.62775 -10.52198 -10.19438 -9.64343 -9.31219 -9.06729 -9.01656 -8.33915 -8.30781 -8.29192 -5.98928 -4.00778 1.07714 1.21946 2.94444 3.32383 3.38641 3.42191 3.51824 4.21200 4.41383 4.47638 4.53512 4.55784 4.62692 4.76821 4.89160 5.03694 5.06265 5.24714 5.29119 5.36791 5.40023 5.47667 5.50316 5.50964 5.55548 5.62357 5.67870 5.69949 5.85980 5.93709 5.95880 5.99727 6.05450 6.12591 6.22587 6.27475 6.29594 6.38000 6.58058 6.61009 6.71010 6.72438 6.96837 7.17103 7.28612 7.36314 7.69493 7.84811 8.01412 8.44892 9.06294 9.63007 11.12397 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.030691 B = 0.002381 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.092940 B =11758.922600 C =11950.886998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.121 4.121 3 C -0.086 4.086 4 C -0.159 4.159 5 C -0.087 4.087 6 C -0.205 4.205 7 C 0.134 3.866 8 O -0.305 6.305 9 C 0.081 3.919 10 H 0.083 0.917 11 C -0.147 4.147 12 C 0.036 3.964 13 N -0.503 5.503 14 C 0.071 3.929 15 H 0.040 0.960 16 C -0.140 4.140 17 C -0.102 4.102 18 C 0.023 3.977 19 C -0.518 4.518 20 H 0.054 0.946 21 C 0.056 3.944 22 N -0.896 5.896 23 Si 0.891 3.109 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.274 1.274 27 C 0.040 3.960 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.126 0.874 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.130 0.870 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.049 0.951 39 H 0.071 0.929 40 H 0.041 0.959 41 H 0.059 0.941 42 H 0.055 0.945 43 H 0.048 0.952 44 H 0.012 0.988 45 H 0.020 0.980 46 H 0.260 0.740 47 H 0.058 0.942 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.098 24.703 -6.142 26.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.121 4.121 3 C -0.104 4.104 4 C -0.177 4.177 5 C -0.105 4.105 6 C -0.223 4.223 7 C 0.089 3.911 8 O -0.218 6.218 9 C 0.024 3.976 10 H 0.101 0.899 11 C -0.185 4.185 12 C -0.092 4.092 13 N -0.228 5.228 14 C -0.036 4.036 15 H 0.058 0.942 16 C -0.197 4.197 17 C -0.140 4.140 18 C -0.015 4.015 19 C -0.557 4.557 20 H 0.072 0.928 21 C -0.145 4.145 22 N -0.535 5.535 23 Si 0.719 3.281 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.199 1.199 27 C -0.088 4.088 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.144 0.856 32 H 0.139 0.861 33 H 0.140 0.860 34 H 0.148 0.852 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.067 0.933 39 H 0.090 0.910 40 H 0.060 0.940 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.067 0.933 44 H 0.031 0.969 45 H 0.038 0.962 46 H 0.070 0.930 47 H 0.076 0.924 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.198 24.284 -6.380 26.412 hybrid contribution -0.258 -0.481 1.094 1.222 sum 7.941 23.803 -5.286 25.643 Atomic orbital electron populations 1.20614 0.90526 1.02809 1.02293 1.19307 0.96591 0.90413 1.05819 1.20876 0.94145 0.96720 0.98627 1.21021 0.94221 0.98033 1.04464 1.20936 0.99756 0.91898 0.97895 1.21337 0.93117 0.99577 1.08301 1.18847 0.90456 0.85792 0.96028 1.86127 1.35951 1.12044 1.87705 1.23248 0.94286 0.82657 0.97424 0.89936 1.22915 1.01429 0.97807 0.96334 1.23037 1.00317 0.93907 0.91911 1.65564 1.41157 1.06542 1.09566 1.22023 0.91992 0.92085 0.97531 0.94179 1.21827 1.02428 1.00533 0.94958 1.21715 1.00689 0.95164 0.96402 1.19124 0.92836 0.92422 0.97078 1.21251 1.03568 1.08614 1.22236 0.92765 1.25023 0.95040 0.98010 0.96435 1.69961 1.09779 1.31403 1.42392 0.86610 0.78756 0.80961 0.81777 1.20726 1.21241 1.19882 1.23074 0.97767 0.88432 0.99525 0.91428 0.91812 0.91030 0.85598 0.86096 0.85953 0.85215 0.90324 0.90392 0.89385 0.93314 0.91049 0.93987 0.92196 0.92633 0.93319 0.96935 0.96170 0.93048 0.92418 0.89200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 9.80 36.01 0.35 -0.60 16 2 C -0.12 -1.25 5.89 -104.47 -0.62 -1.87 16 3 C -0.09 -0.75 9.70 -39.60 -0.38 -1.13 16 4 C -0.16 -1.33 10.04 -39.56 -0.40 -1.72 16 5 C -0.09 -0.76 10.04 -39.61 -0.40 -1.16 16 6 C -0.20 -2.07 8.77 -39.43 -0.35 -2.41 16 7 C 0.13 1.53 6.58 -39.21 -0.26 1.27 16 8 O -0.31 -3.74 8.80 -19.41 -0.17 -3.91 16 9 C 0.08 0.92 2.93 -25.35 -0.07 0.85 16 10 H 0.08 0.86 6.43 -51.93 -0.33 0.53 16 11 C -0.15 -1.67 6.04 -25.35 -0.15 -1.82 16 12 C 0.04 0.50 5.29 -2.19 -0.01 0.49 16 13 N -0.50 -7.49 5.20 -221.89 -1.15 -8.64 16 14 C 0.07 1.24 1.93 -67.71 -0.13 1.11 16 15 H 0.04 0.73 7.97 -51.93 -0.41 0.32 16 16 C -0.14 -2.29 8.92 37.16 0.33 -1.96 16 17 C -0.10 -2.11 4.56 -26.73 -0.12 -2.23 16 18 C 0.02 0.59 4.58 -27.88 -0.13 0.46 16 19 C -0.52 -14.73 9.11 -34.44 -0.31 -15.04 16 20 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 21 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 22 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 23 Si 0.89 21.79 29.54 -169.99 -5.02 16.76 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 27 C 0.04 0.52 5.33 -2.09 -0.01 0.51 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 30 H 0.07 0.72 7.52 -51.93 -0.39 0.33 16 31 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 32 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 33 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 34 H 0.13 1.19 5.72 -52.49 -0.30 0.89 16 35 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 36 H 0.08 0.89 7.98 -51.93 -0.41 0.48 16 37 H 0.09 1.24 7.57 -51.93 -0.39 0.85 16 38 H 0.05 0.72 7.98 -51.93 -0.41 0.31 16 39 H 0.07 1.28 6.67 -51.93 -0.35 0.93 16 40 H 0.04 0.59 7.11 -51.93 -0.37 0.22 16 41 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.05 1.00 6.69 -51.93 -0.35 0.65 16 44 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.02 0.54 6.82 -51.93 -0.35 0.19 16 46 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 47 H 0.06 0.79 7.83 -51.93 -0.41 0.38 16 48 H 0.09 1.08 7.72 -51.93 -0.40 0.67 16 LS Contribution 376.07 15.07 5.67 5.67 Total: -1.00 -30.51 376.07 -10.92 -41.43 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -8.23 Total: -1.31 kcal Atomic # 6 Polarization: -20.99 SS G_CDS: -2.76 Total: -23.75 kcal Atomic # 7 Polarization: -34.48 SS G_CDS: -0.42 Total: -34.89 kcal Atomic # 8 Polarization: -3.74 SS G_CDS: -0.17 Total: -3.91 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.51 -10.92 -41.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172500041.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.207 kcal (2) G-P(sol) polarization free energy of solvation -30.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds