Wall clock time and date at job start Tue Mar 31 2020 07:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38173 * 120.02399 * 2 1 4 4 C 1.38243 * 120.05680 * 180.02562 * 3 2 1 5 5 C 1.38292 * 120.10783 * 0.27153 * 4 3 2 6 6 C 1.38125 * 120.05717 * 359.45463 * 5 4 3 7 7 C 1.38707 * 120.03365 * 180.02562 * 2 1 3 8 8 O 1.35897 * 120.05299 * 359.95312 * 7 2 1 9 9 C 1.42901 * 117.00131 * 185.63875 * 8 7 2 10 10 H 1.08999 * 110.27431 * 30.45684 * 9 8 7 11 11 C 1.54591 * 110.31285 * 268.26289 * 9 8 7 12 12 C 1.54939 * 102.92396 * 219.12486 * 11 9 8 13 13 N 1.48536 * 103.22460 * 37.41482 * 12 11 9 14 14 C 1.46900 * 110.99778 * 200.28159 * 13 12 11 15 15 H 1.08996 * 109.47176 * 167.18859 * 14 13 12 16 16 C 1.53000 * 109.47341 * 47.18447 * 14 13 12 17 17 C 1.53002 * 109.46903 * 287.18724 * 14 13 12 18 18 C 1.53002 * 109.47008 * 295.00212 * 17 14 13 19 19 C 1.50701 * 109.46951 * 180.02562 * 18 17 14 20 20 H 1.08005 * 120.00135 * 359.97438 * 19 18 17 21 21 C 1.37884 * 120.00008 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00025 * 179.97438 * 21 19 18 23 23 Si 1.86793 * 119.99789 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.47273 * 89.99975 * 23 21 19 25 25 H 1.48500 * 109.47325 * 209.99712 * 23 21 19 26 26 H 1.48503 * 109.47532 * 329.99794 * 23 21 19 27 27 C 1.47898 * 105.81846 * 320.79298 * 13 12 11 28 28 H 1.08995 * 109.47234 * 90.00189 * 1 2 3 29 29 H 1.09002 * 109.46720 * 210.00154 * 1 2 3 30 30 H 1.08996 * 109.47302 * 329.99191 * 1 2 3 31 31 H 1.08003 * 119.97308 * 0.04545 * 3 2 1 32 32 H 1.07998 * 119.94652 * 180.02562 * 4 3 2 33 33 H 1.08004 * 119.97120 * 179.72606 * 5 4 3 34 34 H 1.07999 * 120.02824 * 180.27696 * 6 5 4 35 35 H 1.09004 * 110.72446 * 337.48125 * 11 9 8 36 36 H 1.09001 * 110.72418 * 100.76517 * 11 9 8 37 37 H 1.08995 * 110.66458 * 278.98077 * 12 11 9 38 38 H 1.08996 * 110.80907 * 155.91577 * 12 11 9 39 39 H 1.08997 * 109.47075 * 290.45390 * 16 14 13 40 40 H 1.09000 * 109.46521 * 50.45337 * 16 14 13 41 41 H 1.08999 * 109.47331 * 170.44832 * 16 14 13 42 42 H 1.09004 * 109.47423 * 55.00129 * 17 14 13 43 43 H 1.09004 * 109.46900 * 175.00049 * 17 14 13 44 44 H 1.09005 * 109.46697 * 299.99466 * 18 17 14 45 45 H 1.08991 * 109.47434 * 60.00388 * 18 17 14 46 46 H 0.97000 * 119.99949 * 180.02562 * 22 21 19 47 47 H 1.09003 * 109.91879 * 265.97571 * 27 13 12 48 48 H 1.08997 * 110.08401 * 144.77951 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1963 0.0000 4 6 3.5808 1.1971 -0.0005 5 6 4.2752 0.0012 -0.0067 6 6 3.5887 -1.1974 -0.0010 7 6 2.2012 -1.2008 -0.0005 8 8 1.5235 -2.3788 -0.0001 9 6 2.2983 -3.5730 0.1244 10 1 3.1962 -3.3812 0.7119 11 6 2.6750 -4.1165 -1.2729 12 6 2.5324 -5.6494 -1.0985 13 7 1.3480 -5.7818 -0.2120 14 6 1.3312 -7.0922 0.4518 15 1 0.5957 -7.0827 1.2561 16 6 2.7162 -7.3887 1.0305 17 6 0.9611 -8.1741 -0.5649 18 6 -0.4719 -7.9481 -1.0511 19 6 -0.8367 -9.0141 -2.0520 20 1 -0.1181 -9.7763 -2.3153 21 6 -2.0878 -9.0165 -2.6316 22 7 -2.4059 -9.9464 -3.5054 23 14 -3.3307 -7.6987 -2.1757 24 1 -3.1814 -6.5393 -3.0914 25 1 -4.7040 -8.2508 -2.2960 26 1 -3.0950 -7.2585 -0.7771 27 6 1.4606 -4.6881 0.7772 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8899 0.5139 31 1 1.6583 2.1316 0.0007 32 1 4.1193 2.1332 -0.0001 33 1 5.3552 0.0044 -0.0116 34 1 4.1315 -2.1311 -0.0014 35 1 1.9821 -3.7483 -2.0296 36 1 3.7013 -3.8509 -1.5263 37 1 3.4190 -6.0663 -0.6209 38 1 2.3505 -6.1330 -2.0583 39 1 3.4195 -7.5660 0.2169 40 1 3.0523 -6.5373 1.6223 41 1 2.6633 -8.2737 1.6645 42 1 1.6444 -8.1251 -1.4127 43 1 1.0350 -9.1548 -0.0949 44 1 -1.1552 -7.9973 -0.2032 45 1 -0.5458 -6.9676 -1.5211 46 1 -3.2859 -9.9478 -3.9134 47 1 1.9600 -5.0501 1.6759 48 1 0.4705 -4.3089 1.0302 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172506780.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:05 Heat of formation + Delta-G solvation = -32.638554 kcal Electronic energy + Delta-G solvation = -24986.214292 eV Core-core repulsion = 21619.249972 eV Total energy + Delta-G solvation = -3366.964320 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.54892 -40.19968 -38.26834 -35.95063 -34.51237 -33.63692 -31.98867 -30.99891 -30.00432 -29.15652 -27.61923 -27.18625 -24.21316 -23.59588 -22.56230 -22.37445 -21.42680 -20.45563 -19.21229 -18.81477 -17.36339 -16.91521 -16.62358 -16.34178 -16.17578 -16.08244 -15.25062 -15.24182 -14.96525 -14.70145 -14.53151 -14.29833 -14.10514 -14.00239 -13.59316 -13.43559 -13.30372 -13.16093 -13.00695 -12.86463 -12.82361 -12.37642 -12.36124 -12.19724 -12.09490 -11.86594 -11.79931 -11.64918 -11.46489 -11.45939 -11.31472 -11.08116 -10.73389 -9.74723 -9.17269 -9.03654 -8.27973 -6.29519 0.39359 0.51571 1.35666 1.36505 1.50106 2.20665 2.37636 2.82769 3.02601 3.08690 3.48784 3.62423 3.83232 3.92744 3.97614 4.01198 4.17013 4.22219 4.28884 4.32610 4.41180 4.42062 4.43224 4.56800 4.67963 4.69131 4.78064 4.78956 4.79924 4.82997 4.89019 4.92907 4.96828 5.01195 5.08086 5.10724 5.24838 5.32002 5.37923 5.44199 5.55233 5.57165 5.62381 5.68521 5.74389 5.93076 6.03919 6.19566 6.32979 6.52910 6.78959 7.34990 8.89103 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.017360 B = 0.003329 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.537344 B = 8409.381315 C = 9472.024024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.141 4.141 3 C -0.089 4.089 4 C -0.160 4.160 5 C -0.091 4.091 6 C -0.215 4.215 7 C 0.107 3.893 8 O -0.318 6.318 9 C 0.081 3.919 10 H 0.102 0.898 11 C -0.136 4.136 12 C 0.031 3.969 13 N -0.525 5.525 14 C 0.075 3.925 15 H 0.076 0.924 16 C -0.176 4.176 17 C -0.083 4.083 18 C 0.001 3.999 19 C -0.527 4.527 20 H 0.031 0.969 21 C 0.004 3.996 22 N -0.954 5.954 23 Si 0.950 3.050 24 H -0.272 1.272 25 H -0.283 1.283 26 H -0.251 1.251 27 C 0.038 3.962 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.082 0.918 31 H 0.147 0.853 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.139 0.861 35 H 0.064 0.936 36 H 0.098 0.902 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.046 0.954 43 H 0.053 0.947 44 H 0.007 0.993 45 H 0.020 0.980 46 H 0.265 0.735 47 H 0.079 0.921 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.905 23.705 12.035 30.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.142 4.142 3 C -0.107 4.107 4 C -0.178 4.178 5 C -0.109 4.109 6 C -0.233 4.233 7 C 0.062 3.938 8 O -0.231 6.231 9 C 0.025 3.975 10 H 0.120 0.880 11 C -0.175 4.175 12 C -0.096 4.096 13 N -0.250 5.250 14 C -0.033 4.033 15 H 0.094 0.906 16 C -0.234 4.234 17 C -0.121 4.121 18 C -0.036 4.036 19 C -0.565 4.565 20 H 0.049 0.951 21 C -0.192 4.192 22 N -0.596 5.596 23 Si 0.774 3.226 24 H -0.197 1.197 25 H -0.209 1.209 26 H -0.175 1.175 27 C -0.089 4.089 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.100 0.900 31 H 0.165 0.835 32 H 0.164 0.836 33 H 0.164 0.836 34 H 0.157 0.843 35 H 0.083 0.917 36 H 0.117 0.883 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.065 0.935 43 H 0.071 0.929 44 H 0.025 0.975 45 H 0.038 0.962 46 H 0.073 0.927 47 H 0.097 0.903 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 15.061 23.627 11.633 30.338 hybrid contribution -0.109 -0.407 -0.019 0.421 sum 14.952 23.220 11.615 29.961 Atomic orbital electron populations 1.20593 0.90407 1.02852 1.02203 1.19605 0.97112 0.91024 1.06426 1.21194 0.94776 0.96920 0.97833 1.21395 0.94149 0.99112 1.03192 1.21280 1.01035 0.91528 0.97064 1.21475 0.92560 1.00588 1.08687 1.19182 0.91367 0.85771 0.97452 1.86176 1.36696 1.12653 1.87623 1.23366 0.94349 0.82699 0.97132 0.88035 1.22982 1.02678 0.95072 0.96726 1.23291 0.92751 0.95616 0.97966 1.64869 1.40364 1.02282 1.17505 1.21857 0.97358 0.88533 0.95596 0.90610 1.22387 0.96924 1.02715 1.01387 1.21326 0.96723 0.96705 0.97330 1.19358 0.94500 0.95236 0.94509 1.21629 0.98967 1.12233 1.23711 0.95106 1.25963 1.00625 0.98037 0.94614 1.70071 1.22229 1.36489 1.30771 0.85653 0.77625 0.79105 0.80178 1.19743 1.20892 1.17464 1.22893 1.00894 0.90397 0.94732 0.91775 0.92628 0.89960 0.83525 0.83561 0.83566 0.84319 0.91741 0.88340 0.90612 0.91426 0.91772 0.91067 0.91294 0.93534 0.92875 0.97458 0.96160 0.92654 0.90345 0.90701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.06 9.79 71.24 0.70 -1.36 16 2 C -0.14 -2.99 5.89 -19.77 -0.12 -3.11 16 3 C -0.09 -1.47 9.70 22.26 0.22 -1.25 16 4 C -0.16 -2.31 10.04 22.28 0.22 -2.08 16 5 C -0.09 -1.37 10.04 22.26 0.22 -1.15 16 6 C -0.21 -3.95 8.93 22.37 0.20 -3.75 16 7 C 0.11 2.46 6.65 22.50 0.15 2.61 16 8 O -0.32 -8.20 8.77 -92.39 -0.81 -9.01 16 9 C 0.08 1.76 2.83 31.47 0.09 1.85 16 10 H 0.10 1.70 6.08 -2.39 -0.01 1.68 16 11 C -0.14 -3.08 6.64 31.80 0.21 -2.87 16 12 C 0.03 0.80 5.60 86.65 0.49 1.29 16 13 N -0.53 -15.76 4.68 -857.87 -4.01 -19.78 16 14 C 0.08 2.26 2.25 44.92 0.10 2.36 16 15 H 0.08 2.32 8.08 -2.39 -0.02 2.30 16 16 C -0.18 -3.89 8.05 71.98 0.58 -3.31 16 17 C -0.08 -3.27 4.64 30.60 0.14 -3.13 16 18 C 0.00 0.07 3.93 29.85 0.12 0.19 16 19 C -0.53 -31.83 9.66 25.60 0.25 -31.58 16 20 H 0.03 2.02 7.99 -2.91 -0.02 2.00 16 21 C 0.00 0.23 5.47 84.66 0.46 0.69 16 22 N -0.95 -62.16 13.96 21.45 0.30 -61.86 16 23 Si 0.95 47.55 27.47 68.60 1.88 49.44 16 24 H -0.27 -13.31 7.11 99.48 0.71 -12.60 16 25 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 26 H -0.25 -11.90 6.54 99.48 0.65 -11.25 16 27 C 0.04 0.94 6.23 86.45 0.54 1.48 16 28 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.05 1.26 7.53 -2.39 -0.02 1.25 16 30 H 0.08 1.24 8.09 -2.39 -0.02 1.22 16 31 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 32 H 0.15 1.30 8.06 -2.91 -0.02 1.28 16 33 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 34 H 0.14 2.10 5.74 -2.91 -0.02 2.09 16 35 H 0.06 1.77 8.08 -2.38 -0.02 1.75 16 36 H 0.10 1.69 7.96 -2.39 -0.02 1.67 16 37 H 0.08 1.61 5.47 -2.39 -0.01 1.59 16 38 H 0.07 2.06 7.68 -2.39 -0.02 2.04 16 39 H 0.06 1.39 6.53 -2.39 -0.02 1.38 16 40 H 0.07 1.28 6.38 -2.39 -0.02 1.26 16 41 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.05 1.87 7.18 -2.39 -0.02 1.85 16 43 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 44 H 0.01 0.35 7.20 -2.38 -0.02 0.34 16 45 H 0.02 1.02 7.18 -2.39 -0.02 1.00 16 46 H 0.26 16.08 8.31 -92.71 -0.77 15.31 16 47 H 0.08 1.56 6.16 -2.39 -0.01 1.54 16 48 H 0.07 2.07 7.96 -2.39 -0.02 2.05 16 Total: -1.00 -72.58 370.16 2.79 -69.79 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: 0.87 Total: 14.56 kcal Atomic # 6 Polarization: -47.71 SS G_CDS: 4.57 Total: -43.14 kcal Atomic # 7 Polarization: -77.92 SS G_CDS: -3.72 Total: -81.64 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: -0.81 Total: -9.01 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 1.88 Total: 49.44 kcal Total: -72.58 2.79 -69.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172506780.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.147 kcal (2) G-P(sol) polarization free energy of solvation -72.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds