Wall clock time and date at job start Tue Mar 31 2020 07:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38175 * 120.02506 * 2 1 4 4 C 1.38245 * 120.05327 * 180.02562 * 3 2 1 5 5 C 1.38292 * 120.11288 * 0.27560 * 4 3 2 6 6 C 1.38122 * 120.05452 * 359.45201 * 5 4 3 7 7 C 1.38707 * 120.03149 * 180.02562 * 2 1 3 8 8 O 1.35903 * 120.05522 * 359.95596 * 7 2 1 9 9 C 1.42899 * 116.99916 * 177.94858 * 8 7 2 10 10 H 1.08999 * 110.64529 * 39.62593 * 9 8 7 11 11 C 1.54593 * 110.72358 * 276.46657 * 9 8 7 12 12 C 1.53986 * 105.14031 * 219.68525 * 11 9 8 13 13 N 1.47897 * 107.06278 * 358.77709 * 12 11 9 14 14 C 1.46901 * 111.00131 * 145.83980 * 13 12 11 15 15 H 1.08999 * 109.47255 * 180.35032 * 14 13 12 16 16 C 1.53002 * 109.47385 * 300.35223 * 14 13 12 17 17 C 1.52998 * 109.47231 * 60.35161 * 14 13 12 18 18 C 1.53004 * 109.46933 * 65.43533 * 17 14 13 19 19 C 1.50698 * 109.47012 * 184.73498 * 18 17 14 20 20 H 1.07997 * 120.00394 * 0.02562 * 19 18 17 21 21 C 1.37884 * 119.99806 * 180.02562 * 19 18 17 22 22 N 1.31512 * 120.00053 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99849 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47157 * 60.00200 * 23 21 19 25 25 H 1.48505 * 109.47113 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47373 * 300.00262 * 23 21 19 27 27 C 1.48733 * 105.94015 * 25.19962 * 13 12 11 28 28 H 1.09007 * 109.46934 * 89.99966 * 1 2 3 29 29 H 1.09002 * 109.47023 * 209.99267 * 1 2 3 30 30 H 1.08999 * 109.47648 * 330.00204 * 1 2 3 31 31 H 1.07991 * 119.97228 * 0.04659 * 3 2 1 32 32 H 1.08000 * 119.94174 * 180.02562 * 4 3 2 33 33 H 1.07997 * 119.97442 * 179.72108 * 5 4 3 34 34 H 1.08002 * 120.02773 * 180.27711 * 6 5 4 35 35 H 1.08996 * 110.30869 * 338.60633 * 11 9 8 36 36 H 1.09004 * 110.30184 * 100.67141 * 11 9 8 37 37 H 1.09000 * 109.91849 * 118.13400 * 12 11 9 38 38 H 1.09007 * 109.92250 * 239.42396 * 12 11 9 39 39 H 1.09003 * 109.46909 * 63.39987 * 16 14 13 40 40 H 1.08995 * 109.47339 * 183.40578 * 16 14 13 41 41 H 1.09005 * 109.47116 * 303.40461 * 16 14 13 42 42 H 1.08998 * 109.47595 * 185.43855 * 17 14 13 43 43 H 1.08996 * 109.47375 * 305.44331 * 17 14 13 44 44 H 1.08994 * 109.47336 * 304.74169 * 18 17 14 45 45 H 1.09009 * 109.46708 * 64.73932 * 18 17 14 46 46 H 0.96996 * 120.00255 * 179.97438 * 22 21 19 47 47 H 1.08994 * 110.84204 * 202.57334 * 27 13 12 48 48 H 1.09008 * 110.58415 * 79.38211 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1963 0.0000 4 6 3.5808 1.1970 -0.0005 5 6 4.2752 0.0011 -0.0068 6 6 3.5887 -1.1975 -0.0012 7 6 2.2011 -1.2009 -0.0005 8 8 1.5234 -2.3788 -0.0002 9 6 2.3028 -3.5757 -0.0463 10 1 3.1910 -3.4802 0.5782 11 6 2.6920 -3.9192 -1.5025 12 6 2.5580 -5.4499 -1.6042 13 7 2.1471 -5.9391 -0.2704 14 6 1.2545 -7.1000 -0.3874 15 1 0.9626 -7.4357 0.6077 16 6 0.0061 -6.7058 -1.1792 17 6 1.9830 -8.2322 -1.1142 18 6 3.1536 -8.7183 -0.2572 19 6 3.9404 -9.7518 -1.0213 20 1 3.6362 -10.0335 -2.0185 21 6 5.0486 -10.3378 -0.4472 22 7 5.4188 -9.9951 0.7674 23 14 6.0234 -11.6194 -1.3940 24 1 6.5446 -11.0182 -2.6479 25 1 7.1590 -12.0920 -0.5618 26 1 5.1414 -12.7674 -1.7248 27 6 1.4561 -4.7984 0.3881 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8901 0.5137 30 1 -0.3634 0.8900 0.5138 31 1 1.6583 2.1315 0.0008 32 1 4.1194 2.1331 -0.0001 33 1 5.3551 0.0042 -0.0118 34 1 4.1315 -2.1312 -0.0016 35 1 2.0112 -3.4325 -2.2009 36 1 3.7193 -3.6138 -1.7015 37 1 1.8003 -5.7079 -2.3440 38 1 3.5163 -5.8890 -1.8817 39 1 0.2921 -6.4277 -2.1936 40 1 -0.6833 -7.5493 -1.2143 41 1 -0.4798 -5.8594 -0.6938 42 1 1.2919 -9.0572 -1.2867 43 1 2.3594 -7.8676 -2.0699 44 1 3.8007 -7.8754 -0.0143 45 1 2.7713 -9.1599 0.6632 46 1 6.1981 -10.4076 1.1714 47 1 1.4698 -4.9102 1.4722 48 1 0.4332 -4.7073 0.0226 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172506781.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:09 Heat of formation + Delta-G solvation = -15.852404 kcal Electronic energy + Delta-G solvation = -24889.551192 eV Core-core repulsion = 21523.314774 eV Total energy + Delta-G solvation = -3366.236418 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.61728 -39.14342 -37.32380 -34.30509 -32.99031 -32.49477 -30.22362 -29.96107 -28.55416 -28.12931 -26.85632 -25.17005 -23.21341 -22.50838 -21.59630 -21.01271 -20.46670 -18.95423 -18.12175 -16.52069 -16.07879 -15.93118 -15.80769 -15.38642 -14.82290 -14.50421 -14.41506 -14.00109 -13.87760 -13.39257 -13.28255 -13.20251 -12.97740 -12.54643 -12.44844 -12.28035 -12.05910 -11.82667 -11.63202 -11.53532 -11.33510 -11.31438 -11.07249 -10.97957 -10.82820 -10.77198 -10.48826 -10.37519 -10.13054 -9.64556 -9.23451 -8.98535 -8.92162 -8.25206 -8.22558 -7.94440 -5.90152 -3.91808 1.15809 1.29977 3.01689 3.37013 3.41553 3.43792 3.59711 4.31317 4.52290 4.55961 4.62318 4.68214 4.72137 4.87137 5.01344 5.09600 5.12210 5.21925 5.35852 5.42983 5.45128 5.47318 5.50872 5.51959 5.58570 5.62549 5.68659 5.71797 5.79908 5.87874 6.03627 6.04792 6.10937 6.21623 6.24973 6.30481 6.32988 6.37486 6.39222 6.60593 6.66481 6.84095 7.17679 7.25458 7.36748 7.45389 7.82353 8.03748 8.19089 8.54540 9.16771 9.70904 11.20779 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.021123 B = 0.002891 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.236305 B = 9681.791445 C =10579.495772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.123 4.123 3 C -0.086 4.086 4 C -0.160 4.160 5 C -0.085 4.085 6 C -0.204 4.204 7 C 0.136 3.864 8 O -0.305 6.305 9 C 0.080 3.920 10 H 0.089 0.911 11 C -0.152 4.152 12 C 0.035 3.965 13 N -0.491 5.491 14 C 0.073 3.927 15 H 0.081 0.919 16 C -0.190 4.190 17 C -0.103 4.103 18 C 0.028 3.972 19 C -0.520 4.520 20 H 0.050 0.950 21 C 0.057 3.943 22 N -0.894 5.894 23 Si 0.887 3.113 24 H -0.278 1.278 25 H -0.288 1.288 26 H -0.278 1.278 27 C 0.037 3.963 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.125 0.875 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.132 0.868 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.054 0.946 38 H 0.088 0.912 39 H 0.056 0.944 40 H 0.060 0.940 41 H 0.053 0.947 42 H 0.049 0.951 43 H 0.049 0.951 44 H 0.032 0.968 45 H 0.009 0.991 46 H 0.259 0.741 47 H 0.089 0.911 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.741 21.845 -1.961 23.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.124 4.124 3 C -0.105 4.105 4 C -0.178 4.178 5 C -0.103 4.103 6 C -0.222 4.222 7 C 0.090 3.910 8 O -0.218 6.218 9 C 0.023 3.977 10 H 0.107 0.893 11 C -0.190 4.190 12 C -0.093 4.093 13 N -0.215 5.215 14 C -0.035 4.035 15 H 0.100 0.900 16 C -0.248 4.248 17 C -0.140 4.140 18 C -0.009 4.009 19 C -0.559 4.559 20 H 0.068 0.932 21 C -0.144 4.144 22 N -0.533 5.533 23 Si 0.715 3.285 24 H -0.204 1.204 25 H -0.214 1.214 26 H -0.204 1.204 27 C -0.091 4.091 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.143 0.857 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.150 0.850 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.072 0.928 38 H 0.107 0.893 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.051 0.949 45 H 0.028 0.972 46 H 0.069 0.931 47 H 0.107 0.893 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.367 21.569 -1.515 23.185 hybrid contribution 0.258 -0.597 -0.996 1.190 sum -8.110 20.972 -2.511 22.625 Atomic orbital electron populations 1.20593 0.90646 1.02676 1.02156 1.19273 0.96482 0.90418 1.06187 1.20854 0.94142 0.96652 0.98805 1.21018 0.94212 0.98024 1.04545 1.20957 0.99852 0.91868 0.97668 1.21387 0.93206 0.99739 1.07913 1.18837 0.90452 0.85749 0.95968 1.86067 1.35825 1.12096 1.87792 1.23406 0.94840 0.82331 0.97140 0.89341 1.22966 1.02448 0.97264 0.96342 1.22864 1.02290 0.92372 0.91759 1.65034 1.36254 1.03534 1.16698 1.22001 0.90064 0.91578 0.99888 0.90045 1.22560 0.99620 1.01608 1.01056 1.21722 0.98852 0.94441 0.99032 1.19022 0.91778 0.96018 0.94087 1.21282 1.11009 1.22372 1.01187 0.93183 1.24995 0.97481 0.96959 0.94925 1.69962 1.26114 1.43195 1.14057 0.86747 0.79687 0.82139 0.79905 1.20384 1.21376 1.20405 1.23264 0.96772 0.88394 1.00635 0.91581 0.91099 0.91886 0.85680 0.86125 0.85883 0.84998 0.90761 0.90620 0.92834 0.89333 0.92486 0.92053 0.92808 0.93208 0.93259 0.94929 0.97214 0.93134 0.89312 0.92057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.95 9.79 36.00 0.35 -0.59 16 2 C -0.12 -1.34 5.89 -104.47 -0.62 -1.95 16 3 C -0.09 -0.81 9.70 -39.60 -0.38 -1.20 16 4 C -0.16 -1.48 10.04 -39.56 -0.40 -1.87 16 5 C -0.09 -0.86 10.04 -39.60 -0.40 -1.26 16 6 C -0.20 -2.35 8.86 -39.43 -0.35 -2.70 16 7 C 0.14 1.66 6.58 -39.22 -0.26 1.40 16 8 O -0.30 -3.93 8.94 -19.44 -0.17 -4.10 16 9 C 0.08 1.03 2.89 -24.87 -0.07 0.95 16 10 H 0.09 1.15 6.31 -51.93 -0.33 0.82 16 11 C -0.15 -1.93 6.27 -25.38 -0.16 -2.09 16 12 C 0.03 0.52 5.11 -2.76 -0.01 0.51 16 13 N -0.49 -8.03 4.71 -222.33 -1.05 -9.07 16 14 C 0.07 1.23 2.45 -67.71 -0.17 1.06 16 15 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 16 C -0.19 -2.60 8.57 37.16 0.32 -2.28 16 17 C -0.10 -2.09 4.50 -26.73 -0.12 -2.21 16 18 C 0.03 0.73 4.92 -27.88 -0.14 0.59 16 19 C -0.52 -14.86 9.11 -34.44 -0.31 -15.18 16 20 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 21 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 22 N -0.89 -27.26 13.29 55.43 0.74 -26.52 16 23 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 27 C 0.04 0.51 6.14 -1.78 -0.01 0.50 16 28 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 29 H 0.07 0.70 7.53 -51.93 -0.39 0.31 16 30 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 31 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 32 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 33 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 34 H 0.13 1.48 5.60 -52.49 -0.29 1.19 16 35 H 0.07 0.91 8.07 -51.93 -0.42 0.49 16 36 H 0.08 0.91 7.84 -51.93 -0.41 0.50 16 37 H 0.05 0.77 5.36 -51.93 -0.28 0.49 16 38 H 0.09 1.49 8.09 -51.92 -0.42 1.07 16 39 H 0.06 0.77 6.11 -51.93 -0.32 0.45 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.05 0.67 5.86 -51.93 -0.30 0.37 16 42 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.05 0.99 6.88 -51.93 -0.36 0.64 16 44 H 0.03 0.90 7.64 -51.93 -0.40 0.51 16 45 H 0.01 0.27 8.14 -51.92 -0.42 -0.16 16 46 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 47 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 48 H 0.06 0.81 5.55 -51.92 -0.29 0.52 16 LS Contribution 372.13 15.07 5.61 5.61 Total: -1.00 -30.94 372.13 -10.69 -41.62 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -7.97 Total: 0.32 kcal Atomic # 6 Polarization: -21.94 SS G_CDS: -2.82 Total: -24.76 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: -0.31 Total: -35.60 kcal Atomic # 8 Polarization: -3.93 SS G_CDS: -0.17 Total: -4.10 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.94 -10.69 -41.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172506781.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.772 kcal (2) G-P(sol) polarization free energy of solvation -30.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds