Wall clock time and date at job start Tue Mar 31 2020 07:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35896 * 117.00039 * 2 1 4 4 C 1.38757 * 120.05265 * 359.97438 * 3 2 1 5 5 C 1.38130 * 119.94053 * 180.02562 * 4 3 2 6 6 C 1.38281 * 120.05819 * 359.97438 * 5 4 3 7 7 C 1.50703 * 119.94547 * 180.02562 * 6 5 4 8 8 N 1.46903 * 109.46980 * 90.00288 * 7 6 5 9 9 C 1.46898 * 110.99670 * 180.02562 * 8 7 6 10 10 C 1.52992 * 109.47298 * 274.99562 * 9 8 7 11 11 C 1.53005 * 109.47301 * 300.00338 * 10 9 8 12 12 C 1.53001 * 109.47157 * 299.99931 * 11 10 9 13 13 C 1.50692 * 109.47087 * 179.97438 * 12 11 10 14 14 H 1.08004 * 120.00124 * 239.99518 * 13 12 11 15 15 C 1.37885 * 120.00076 * 60.00116 * 13 12 11 16 16 N 1.31507 * 119.99614 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00039 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46954 * 60.00078 * 17 15 13 19 19 H 1.48494 * 109.47361 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47178 * 300.00264 * 17 15 13 21 21 C 1.53003 * 109.47070 * 59.99541 * 12 11 10 22 22 C 1.53002 * 109.47155 * 300.00182 * 21 12 11 23 23 C 1.38248 * 120.10951 * 0.02562 * 6 5 4 24 24 C 1.38166 * 120.05883 * 359.76356 * 23 6 5 25 25 C 1.50701 * 120.02891 * 180.25589 * 24 23 6 26 26 H 1.09000 * 109.47187 * 300.00222 * 1 2 3 27 27 H 1.09001 * 109.46558 * 60.00270 * 1 2 3 28 28 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 29 29 H 1.07997 * 120.03063 * 0.02562 * 4 3 2 30 30 H 1.07996 * 119.96795 * 179.97438 * 5 4 3 31 31 H 1.08995 * 109.47189 * 209.99792 * 7 6 5 32 32 H 1.08996 * 109.46612 * 330.00034 * 7 6 5 33 33 H 1.00898 * 110.99541 * 303.95084 * 8 7 6 34 34 H 1.08998 * 109.47348 * 35.00023 * 9 8 7 35 35 H 1.09000 * 109.47119 * 60.00153 * 10 9 8 36 36 H 1.08999 * 109.47415 * 180.02562 * 10 9 8 37 37 H 1.08997 * 109.47433 * 179.97438 * 11 10 9 38 38 H 1.08999 * 109.46873 * 59.99685 * 11 10 9 39 39 H 1.08998 * 109.46550 * 299.99889 * 12 11 10 40 40 H 0.97009 * 120.00083 * 180.02562 * 16 15 13 41 41 H 1.09000 * 109.47230 * 180.02562 * 21 12 11 42 42 H 1.08999 * 109.47099 * 60.00161 * 21 12 11 43 43 H 1.08999 * 109.47100 * 299.99979 * 22 21 12 44 44 H 1.09006 * 109.46783 * 179.97438 * 22 21 12 45 45 H 1.08009 * 119.96868 * 180.02562 * 23 6 5 46 46 H 1.08999 * 109.46852 * 270.22884 * 25 24 23 47 47 H 1.08994 * 109.46996 * 30.23768 * 25 24 23 48 48 H 1.08996 * 109.46797 * 150.23660 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9209 3.6048 -0.0011 6 6 3.3019 3.6758 -0.0005 7 6 3.9860 5.0186 -0.0005 8 7 4.2078 5.4551 1.3845 9 6 4.8739 6.7638 1.4236 10 6 6.3873 6.5694 1.3120 11 6 6.8789 5.7117 2.4799 12 6 6.5507 6.4117 3.8002 13 6 7.0342 5.5667 4.9504 14 1 6.3323 5.2050 5.6873 15 6 8.3728 5.2554 5.0622 16 7 9.2274 5.6955 4.1648 17 14 8.9724 4.2086 6.4884 18 1 8.2985 2.8858 6.4491 19 1 10.4411 4.0186 6.3800 20 1 8.6539 4.8884 7.7697 21 6 5.0372 6.6062 3.9118 22 6 4.5457 7.4639 2.7440 23 6 4.0559 2.5171 0.0000 24 6 3.4311 1.2848 0.0049 25 6 4.2538 0.0222 0.0113 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.2128 2.3203 -0.0005 30 1 1.3340 4.5113 -0.0019 31 1 4.9441 4.9382 -0.5139 32 1 3.3582 5.7462 -0.5148 33 1 3.3409 5.4754 1.9004 34 1 4.5238 7.3748 0.5917 35 1 6.6212 6.0707 0.3714 36 1 6.8816 7.5404 1.3415 37 1 7.9570 5.5728 2.4001 38 1 6.3846 4.7407 2.4508 39 1 7.0449 7.3827 3.8292 40 1 10.1691 5.4762 4.2431 41 1 4.8034 7.1053 4.8522 42 1 4.5429 5.6352 3.8827 43 1 5.0400 8.4349 2.7731 44 1 3.4674 7.6021 2.8233 45 1 5.1344 2.5753 0.0008 46 1 4.4565 -0.2846 -1.0148 47 1 5.1955 0.2047 0.5289 48 1 3.7042 -0.7669 0.5245 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173334269.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:59 Heat of formation + Delta-G solvation = -35.202860 kcal Electronic energy + Delta-G solvation = -25058.505370 eV Core-core repulsion = 21691.429853 eV Total energy + Delta-G solvation = -3367.075517 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.31231 -38.46296 -37.50569 -34.52153 -32.92536 -32.12025 -30.38914 -29.61525 -28.43828 -27.70027 -26.69270 -24.76755 -23.96535 -22.01446 -21.44947 -20.44600 -20.43303 -18.06552 -18.03244 -16.53394 -16.18425 -15.90563 -15.61291 -14.81835 -14.58006 -14.49273 -14.29070 -14.01903 -13.60060 -13.47938 -13.21331 -12.88288 -12.54278 -12.40684 -12.11871 -12.10277 -11.98971 -11.79613 -11.46411 -11.37692 -11.21197 -10.96928 -10.88639 -10.80760 -10.59627 -10.52710 -10.13304 -9.97297 -9.64219 -9.16758 -8.77178 -8.76459 -8.44633 -8.11579 -8.08120 -7.81471 -5.82940 -3.87797 1.35923 1.42391 3.17294 3.40649 3.44664 3.48015 3.70432 4.55656 4.65527 4.71696 4.77194 4.89454 4.93220 4.99008 5.22105 5.28606 5.34846 5.44479 5.46370 5.55199 5.58829 5.62438 5.71207 5.73167 5.78566 5.85647 5.98859 6.23926 6.24143 6.30578 6.39517 6.42549 6.49744 6.57079 6.63228 6.72775 6.81417 6.86303 6.95327 7.12033 7.32380 7.36844 7.50916 7.62985 7.76183 7.83152 7.93879 8.27924 8.37734 8.67158 9.16063 9.75341 11.22240 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.014019 B = 0.003664 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.740212 B = 7640.625838 C = 8751.573101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.317 6.317 3 C 0.118 3.882 4 C -0.206 4.206 5 C -0.083 4.083 6 C -0.105 4.105 7 C 0.103 3.897 8 N -0.664 5.664 9 C 0.094 3.906 10 C -0.105 4.105 11 C -0.097 4.097 12 C 0.053 3.947 13 C -0.506 4.506 14 H 0.050 0.950 15 C 0.060 3.940 16 N -0.892 5.892 17 Si 0.886 3.114 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.279 1.279 21 C -0.102 4.102 22 C -0.118 4.118 23 C -0.057 4.057 24 C -0.116 4.116 25 C -0.105 4.105 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.097 0.903 29 H 0.124 0.876 30 H 0.119 0.881 31 H 0.079 0.921 32 H 0.028 0.972 33 H 0.335 0.665 34 H 0.024 0.976 35 H 0.038 0.962 36 H 0.048 0.952 37 H 0.081 0.919 38 H 0.048 0.952 39 H 0.016 0.984 40 H 0.257 0.743 41 H 0.038 0.962 42 H 0.056 0.944 43 H 0.059 0.941 44 H 0.040 0.960 45 H 0.133 0.867 46 H 0.065 0.935 47 H 0.068 0.932 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.166 -6.235 -11.961 21.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.230 6.230 3 C 0.074 3.926 4 C -0.225 4.225 5 C -0.102 4.102 6 C -0.106 4.106 7 C -0.026 4.026 8 N -0.296 5.296 9 C -0.015 4.015 10 C -0.143 4.143 11 C -0.135 4.135 12 C 0.034 3.966 13 C -0.545 4.545 14 H 0.069 0.931 15 C -0.140 4.140 16 N -0.531 5.531 17 Si 0.714 3.286 18 H -0.204 1.204 19 H -0.215 1.215 20 H -0.205 1.205 21 C -0.140 4.140 22 C -0.156 4.156 23 C -0.075 4.075 24 C -0.116 4.116 25 C -0.162 4.162 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.115 0.885 29 H 0.141 0.859 30 H 0.137 0.863 31 H 0.097 0.903 32 H 0.046 0.954 33 H 0.154 0.846 34 H 0.042 0.958 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.099 0.901 38 H 0.067 0.933 39 H 0.034 0.966 40 H 0.067 0.933 41 H 0.056 0.944 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.059 0.941 45 H 0.150 0.850 46 H 0.083 0.917 47 H 0.087 0.913 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.292 -6.771 -11.929 20.543 hybrid contribution -0.726 0.232 0.528 0.927 sum -16.018 -6.539 -11.401 20.720 Atomic orbital electron populations 1.23010 0.78841 1.03621 1.01208 1.86048 1.20936 1.27091 1.88941 1.18816 0.91831 0.84003 0.97999 1.21094 0.99570 0.92325 1.09502 1.20772 0.94045 0.96788 0.98584 1.19735 0.93036 0.95345 1.02451 1.20851 0.99096 0.91486 0.91154 1.60494 1.28409 1.29481 1.11222 1.21530 0.96380 0.87656 0.95942 1.21611 0.92774 1.00179 0.99784 1.21425 1.02135 0.97369 0.92568 1.18587 0.88806 0.95713 0.93448 1.21209 0.92545 1.31697 1.09031 0.93136 1.24938 0.97002 0.96094 0.95946 1.69884 1.02573 1.46048 1.34615 0.86767 0.77471 0.81135 0.83228 1.20395 1.21474 1.20520 1.21537 1.00150 0.98027 0.94242 1.21744 0.98578 0.99304 0.95938 1.20852 1.00222 0.90199 0.96242 1.19275 0.90476 0.96291 1.05601 1.20604 0.99127 0.94430 1.01993 0.92756 0.92901 0.88494 0.85858 0.86316 0.90293 0.95355 0.84635 0.95781 0.94369 0.93290 0.90113 0.93300 0.96564 0.93282 0.94367 0.92502 0.92186 0.94087 0.84953 0.91670 0.91286 0.91409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.67 9.54 -19.41 -0.19 -3.86 16 3 C 0.12 1.51 6.66 -39.22 -0.26 1.25 16 4 C -0.21 -2.38 9.04 -39.43 -0.36 -2.73 16 5 C -0.08 -0.99 9.69 -39.61 -0.38 -1.38 16 6 C -0.11 -1.40 5.39 -104.60 -0.56 -1.96 16 7 C 0.10 1.39 5.61 -4.97 -0.03 1.37 16 8 N -0.66 -10.47 4.81 -108.00 -0.52 -10.99 16 9 C 0.09 1.57 2.82 -67.72 -0.19 1.38 16 10 C -0.11 -2.05 5.53 -26.73 -0.15 -2.20 16 11 C -0.10 -2.31 4.82 -26.73 -0.13 -2.44 16 12 C 0.05 1.33 2.10 -91.77 -0.19 1.14 16 13 C -0.51 -14.27 8.56 -34.44 -0.29 -14.56 16 14 H 0.05 1.42 7.74 -52.48 -0.41 1.01 16 15 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 16 N -0.89 -26.00 11.32 55.43 0.63 -25.38 16 17 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 21 C -0.10 -2.15 4.98 -26.73 -0.13 -2.28 16 22 C -0.12 -2.04 5.30 -26.73 -0.14 -2.18 16 23 C -0.06 -0.78 9.35 -39.60 -0.37 -1.15 16 24 C -0.12 -1.55 5.89 -104.47 -0.62 -2.16 16 25 C -0.10 -1.22 9.79 36.01 0.35 -0.87 16 26 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 27 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 28 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.12 1.12 6.30 -52.49 -0.33 0.79 16 30 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 31 H 0.08 1.11 7.38 -51.93 -0.38 0.73 16 32 H 0.03 0.35 8.00 -51.93 -0.42 -0.07 16 33 H 0.34 5.05 8.18 -39.29 -0.32 4.73 16 34 H 0.02 0.37 7.80 -51.93 -0.40 -0.03 16 35 H 0.04 0.70 7.45 -51.93 -0.39 0.31 16 36 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.08 2.19 6.07 -51.93 -0.32 1.88 16 38 H 0.05 1.21 7.60 -51.93 -0.39 0.81 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.06 1.22 7.48 -51.93 -0.39 0.83 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.04 0.62 8.12 -51.93 -0.42 0.19 16 45 H 0.13 1.82 8.06 -52.48 -0.42 1.39 16 46 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 47 H 0.07 0.79 8.09 -51.93 -0.42 0.37 16 48 H 0.07 0.78 7.53 -51.93 -0.39 0.39 16 LS Contribution 373.54 15.07 5.63 5.63 Total: -1.00 -30.10 373.54 -10.32 -40.43 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -8.29 Total: 3.28 kcal Atomic # 6 Polarization: -23.40 SS G_CDS: -2.56 Total: -25.96 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: 0.11 Total: -36.36 kcal Atomic # 8 Polarization: -3.67 SS G_CDS: -0.19 Total: -3.86 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.10 -10.32 -40.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173334269.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.223 kcal (2) G-P(sol) polarization free energy of solvation -30.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds