Wall clock time and date at job start Tue Mar 31 2020 07:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35896 * 117.00039 * 2 1 4 4 C 1.38757 * 120.05265 * 359.97438 * 3 2 1 5 5 C 1.38130 * 119.94053 * 180.02562 * 4 3 2 6 6 C 1.38281 * 120.05819 * 359.97438 * 5 4 3 7 7 C 1.50703 * 119.94547 * 180.02562 * 6 5 4 8 8 N 1.46903 * 109.46980 * 90.00288 * 7 6 5 9 9 C 1.46898 * 110.99670 * 180.02562 * 8 7 6 10 10 C 1.52992 * 109.47298 * 274.99562 * 9 8 7 11 11 C 1.53005 * 109.47301 * 300.00338 * 10 9 8 12 12 C 1.53001 * 109.47157 * 299.99931 * 11 10 9 13 13 C 1.50692 * 109.47087 * 179.97438 * 12 11 10 14 14 H 1.08004 * 120.00124 * 239.99518 * 13 12 11 15 15 C 1.37885 * 120.00076 * 60.00116 * 13 12 11 16 16 N 1.31507 * 119.99614 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00039 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46954 * 60.00078 * 17 15 13 19 19 H 1.48494 * 109.47361 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47178 * 300.00264 * 17 15 13 21 21 C 1.53003 * 109.47070 * 59.99541 * 12 11 10 22 22 C 1.53002 * 109.47155 * 300.00182 * 21 12 11 23 23 C 1.38248 * 120.10951 * 0.02562 * 6 5 4 24 24 C 1.38166 * 120.05883 * 359.76356 * 23 6 5 25 25 C 1.50701 * 120.02891 * 180.25589 * 24 23 6 26 26 H 1.09000 * 109.47187 * 300.00222 * 1 2 3 27 27 H 1.09001 * 109.46558 * 60.00270 * 1 2 3 28 28 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 29 29 H 1.07997 * 120.03063 * 0.02562 * 4 3 2 30 30 H 1.07996 * 119.96795 * 179.97438 * 5 4 3 31 31 H 1.08995 * 109.47189 * 209.99792 * 7 6 5 32 32 H 1.08996 * 109.46612 * 330.00034 * 7 6 5 33 33 H 1.00898 * 110.99541 * 303.95084 * 8 7 6 34 34 H 1.08998 * 109.47348 * 35.00023 * 9 8 7 35 35 H 1.09000 * 109.47119 * 60.00153 * 10 9 8 36 36 H 1.08999 * 109.47415 * 180.02562 * 10 9 8 37 37 H 1.08997 * 109.47433 * 179.97438 * 11 10 9 38 38 H 1.08999 * 109.46873 * 59.99685 * 11 10 9 39 39 H 1.08998 * 109.46550 * 299.99889 * 12 11 10 40 40 H 0.97009 * 120.00083 * 180.02562 * 16 15 13 41 41 H 1.09000 * 109.47230 * 180.02562 * 21 12 11 42 42 H 1.08999 * 109.47099 * 60.00161 * 21 12 11 43 43 H 1.08999 * 109.47100 * 299.99979 * 22 21 12 44 44 H 1.09006 * 109.46783 * 179.97438 * 22 21 12 45 45 H 1.08009 * 119.96868 * 180.02562 * 23 6 5 46 46 H 1.08999 * 109.46852 * 270.22884 * 25 24 23 47 47 H 1.08994 * 109.46996 * 30.23768 * 25 24 23 48 48 H 1.08996 * 109.46797 * 150.23660 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9209 3.6048 -0.0011 6 6 3.3019 3.6758 -0.0005 7 6 3.9860 5.0186 -0.0005 8 7 4.2078 5.4551 1.3845 9 6 4.8739 6.7638 1.4236 10 6 6.3873 6.5694 1.3120 11 6 6.8789 5.7117 2.4799 12 6 6.5507 6.4117 3.8002 13 6 7.0342 5.5667 4.9504 14 1 6.3323 5.2050 5.6873 15 6 8.3728 5.2554 5.0622 16 7 9.2274 5.6955 4.1648 17 14 8.9724 4.2086 6.4884 18 1 8.2985 2.8858 6.4491 19 1 10.4411 4.0186 6.3800 20 1 8.6539 4.8884 7.7697 21 6 5.0372 6.6062 3.9118 22 6 4.5457 7.4639 2.7440 23 6 4.0559 2.5171 0.0000 24 6 3.4311 1.2848 0.0049 25 6 4.2538 0.0222 0.0113 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.2128 2.3203 -0.0005 30 1 1.3340 4.5113 -0.0019 31 1 4.9441 4.9382 -0.5139 32 1 3.3582 5.7462 -0.5148 33 1 3.3409 5.4754 1.9004 34 1 4.5238 7.3748 0.5917 35 1 6.6212 6.0707 0.3714 36 1 6.8816 7.5404 1.3415 37 1 7.9570 5.5728 2.4001 38 1 6.3846 4.7407 2.4508 39 1 7.0449 7.3827 3.8292 40 1 10.1691 5.4762 4.2431 41 1 4.8034 7.1053 4.8522 42 1 4.5429 5.6352 3.8827 43 1 5.0400 8.4349 2.7731 44 1 3.4674 7.6021 2.8233 45 1 5.1344 2.5753 0.0008 46 1 4.4565 -0.2846 -1.0148 47 1 5.1955 0.2047 0.5289 48 1 3.7042 -0.7669 0.5245 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173334269.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:58 Heat of formation + Delta-G solvation = -50.983939 kcal Electronic energy + Delta-G solvation = -25059.189689 eV Core-core repulsion = 21691.429853 eV Total energy + Delta-G solvation = -3367.759836 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.19721 -39.84750 -38.54014 -36.01665 -34.37368 -33.45651 -31.70304 -31.28545 -29.85268 -28.44891 -27.66733 -26.48313 -25.29313 -23.16001 -22.85379 -22.19403 -21.41620 -19.68365 -18.87486 -18.32551 -17.43842 -16.81960 -16.65749 -16.52652 -16.05239 -15.63549 -15.42198 -15.20203 -14.68460 -14.60983 -14.39193 -14.17624 -14.03842 -13.84609 -13.51473 -13.19341 -13.13979 -12.88550 -12.81673 -12.79279 -12.70092 -12.54806 -12.46454 -11.96800 -11.87179 -11.83848 -11.71554 -11.62328 -11.54391 -11.08594 -10.64341 -10.35418 -10.22603 -9.71292 -9.13445 -8.89510 -8.00335 -6.13447 0.42363 0.46857 1.41112 1.42963 1.50071 2.42627 2.47058 2.74102 3.24911 3.52470 3.84107 3.88809 3.97744 4.09569 4.19644 4.28227 4.36035 4.40833 4.41782 4.46146 4.53961 4.67864 4.73237 4.73435 4.76694 4.81166 4.84199 4.87904 4.97658 4.98254 5.02618 5.06574 5.18981 5.23938 5.31697 5.38563 5.39975 5.47903 5.55446 5.67088 5.73793 5.75889 5.88751 5.89754 6.21662 6.29933 6.36371 6.49822 6.54688 6.68518 7.00449 7.53132 9.02524 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.014019 B = 0.003664 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.740212 B = 7640.625838 C = 8751.573101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.333 6.333 3 C 0.110 3.890 4 C -0.205 4.205 5 C -0.082 4.082 6 C -0.116 4.116 7 C 0.109 3.891 8 N -0.680 5.680 9 C 0.103 3.897 10 C -0.100 4.100 11 C -0.082 4.082 12 C 0.049 3.951 13 C -0.531 4.531 14 H 0.045 0.955 15 C 0.011 3.989 16 N -0.917 5.917 17 Si 0.947 3.053 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.272 1.272 21 C -0.093 4.093 22 C -0.111 4.111 23 C -0.075 4.075 24 C -0.136 4.136 25 C -0.102 4.102 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.117 0.883 29 H 0.150 0.850 30 H 0.143 0.857 31 H 0.067 0.933 32 H 0.051 0.949 33 H 0.342 0.658 34 H 0.054 0.946 35 H 0.047 0.953 36 H 0.043 0.957 37 H 0.041 0.959 38 H 0.034 0.966 39 H -0.017 1.017 40 H 0.257 0.743 41 H 0.033 0.967 42 H 0.052 0.948 43 H 0.059 0.941 44 H 0.075 0.925 45 H 0.120 0.880 46 H 0.075 0.925 47 H 0.063 0.937 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.823 -6.222 -12.507 23.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.247 6.247 3 C 0.065 3.935 4 C -0.223 4.223 5 C -0.100 4.100 6 C -0.117 4.117 7 C -0.019 4.019 8 N -0.313 5.313 9 C -0.006 4.006 10 C -0.138 4.138 11 C -0.121 4.121 12 C 0.031 3.969 13 C -0.569 4.569 14 H 0.063 0.937 15 C -0.187 4.187 16 N -0.557 5.557 17 Si 0.773 3.227 18 H -0.200 1.200 19 H -0.209 1.209 20 H -0.197 1.197 21 C -0.131 4.131 22 C -0.149 4.149 23 C -0.094 4.094 24 C -0.137 4.137 25 C -0.158 4.158 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.135 0.865 29 H 0.168 0.832 30 H 0.161 0.839 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.162 0.838 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.052 0.948 39 H 0.001 0.999 40 H 0.066 0.934 41 H 0.052 0.948 42 H 0.071 0.929 43 H 0.078 0.922 44 H 0.094 0.906 45 H 0.138 0.862 46 H 0.093 0.907 47 H 0.082 0.918 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -17.970 -6.761 -12.475 22.897 hybrid contribution 0.070 0.167 0.700 0.723 sum -17.900 -6.594 -11.775 22.417 Atomic orbital electron populations 1.23316 0.76703 1.05397 1.02129 1.86029 1.23183 1.26701 1.88758 1.18982 0.91815 0.84983 0.97752 1.21410 1.00924 0.91697 1.08311 1.21038 0.93510 0.97935 0.97517 1.19777 0.93827 0.94822 1.03267 1.20802 0.99071 0.92127 0.89940 1.60364 1.29065 1.28989 1.12910 1.21361 0.94020 0.88619 0.96598 1.21510 0.95406 0.98856 0.98076 1.21125 0.99466 0.97430 0.94034 1.18572 0.91568 0.93476 0.93281 1.21626 0.92941 1.32285 1.10031 0.93676 1.25698 0.97261 0.97305 0.98402 1.70037 1.02662 1.46942 1.36021 0.85793 0.77040 0.79538 0.80358 1.19979 1.20949 1.19721 1.21358 0.96911 0.98712 0.96078 1.21682 1.00570 0.98293 0.94327 1.20881 0.99899 0.91089 0.97526 1.19480 0.91443 0.96491 1.06261 1.20583 0.98684 0.94024 1.02548 0.92065 0.91610 0.86485 0.83209 0.83911 0.91423 0.93090 0.83830 0.92806 0.93382 0.93851 0.94086 0.94756 0.99892 0.93372 0.94782 0.92910 0.92243 0.90603 0.86179 0.90673 0.91818 0.91469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.35 16 2 O -0.33 -7.22 9.54 -92.39 -0.88 -8.11 16 3 C 0.11 2.67 6.66 22.51 0.15 2.82 16 4 C -0.20 -4.20 9.04 22.37 0.20 -4.00 16 5 C -0.08 -1.72 9.69 22.25 0.22 -1.51 16 6 C -0.12 -2.93 5.39 -19.85 -0.11 -3.04 16 7 C 0.11 2.73 5.61 85.56 0.48 3.21 16 8 N -0.68 -20.12 4.81 -495.59 -2.39 -22.51 16 9 C 0.10 3.21 2.82 44.91 0.13 3.34 16 10 C -0.10 -3.88 5.53 30.59 0.17 -3.71 16 11 C -0.08 -4.05 4.82 30.60 0.15 -3.91 16 12 C 0.05 2.56 2.10 -11.54 -0.02 2.54 16 13 C -0.53 -30.70 8.56 25.60 0.22 -30.48 16 14 H 0.04 2.58 7.74 -2.91 -0.02 2.56 16 15 C 0.01 0.66 5.30 84.66 0.45 1.10 16 16 N -0.92 -55.19 11.32 21.45 0.24 -54.95 16 17 Si 0.95 45.60 29.54 68.60 2.03 47.63 16 18 H -0.27 -12.96 7.11 99.48 0.71 -12.26 16 19 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 20 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 21 C -0.09 -3.88 4.98 30.60 0.15 -3.72 16 22 C -0.11 -3.58 5.30 30.60 0.16 -3.42 16 23 C -0.08 -2.10 9.35 22.25 0.21 -1.89 16 24 C -0.14 -3.62 5.89 -19.77 -0.12 -3.74 16 25 C -0.10 -2.41 9.79 71.24 0.70 -1.71 16 26 H 0.06 0.68 7.66 -2.39 -0.02 0.66 16 27 H 0.07 0.65 7.66 -2.39 -0.02 0.63 16 28 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.15 2.18 6.30 -2.91 -0.02 2.16 16 30 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 31 H 0.07 1.84 7.38 -2.39 -0.02 1.82 16 32 H 0.05 1.06 8.00 -2.39 -0.02 1.04 16 33 H 0.34 9.36 8.18 -89.70 -0.73 8.62 16 34 H 0.05 1.42 7.80 -2.39 -0.02 1.41 16 35 H 0.05 1.74 7.45 -2.39 -0.02 1.73 16 36 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.04 2.32 6.07 -2.39 -0.01 2.31 16 38 H 0.03 1.74 7.60 -2.39 -0.02 1.72 16 39 H -0.02 -0.99 8.14 -2.39 -0.02 -1.00 16 40 H 0.26 14.80 8.31 -92.70 -0.77 14.03 16 41 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.05 2.23 7.48 -2.39 -0.02 2.21 16 43 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.08 1.97 8.12 -2.38 -0.02 1.96 16 45 H 0.12 3.49 8.06 -2.91 -0.02 3.47 16 46 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.06 1.52 8.09 -2.39 -0.02 1.50 16 48 H 0.07 1.56 7.53 -2.39 -0.02 1.54 16 Total: -1.00 -66.95 373.54 3.44 -63.51 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: 0.20 Total: 21.20 kcal Atomic # 6 Polarization: -51.02 SS G_CDS: 4.24 Total: -46.78 kcal Atomic # 7 Polarization: -75.31 SS G_CDS: -2.14 Total: -77.45 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: -0.88 Total: -8.11 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -66.95 3.44 -63.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173334269.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.524 kcal (2) G-P(sol) polarization free energy of solvation -66.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds