Wall clock time and date at job start Tue Mar 31 2020 07:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38284 * 119.97497 * 2 1 4 4 C 1.38238 * 120.11734 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.97447 * 180.02562 * 4 3 2 6 6 C 1.38170 * 120.05240 * 0.02562 * 4 3 2 7 7 C 1.50701 * 120.02559 * 179.97438 * 6 4 3 8 8 N 1.46901 * 109.46921 * 89.99768 * 7 6 4 9 9 C 1.46906 * 110.99793 * 179.97438 * 8 7 6 10 10 C 1.52994 * 109.47113 * 275.00325 * 9 8 7 11 11 C 1.53011 * 109.47390 * 299.99726 * 10 9 8 12 12 C 1.52992 * 109.46817 * 300.00523 * 11 10 9 13 13 C 1.50709 * 109.46818 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99846 * 239.99261 * 13 12 11 15 15 C 1.37871 * 119.99679 * 60.00438 * 13 12 11 16 16 N 1.31514 * 120.00351 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99691 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47453 * 89.99686 * 17 15 13 19 19 H 1.48504 * 109.47017 * 209.99191 * 17 15 13 20 20 H 1.48495 * 109.47561 * 329.99537 * 17 15 13 21 21 C 1.53004 * 109.47693 * 59.99669 * 12 11 10 22 22 C 1.52999 * 109.46825 * 299.99814 * 21 12 11 23 23 C 1.38711 * 119.94425 * 0.22971 * 6 4 3 24 24 O 1.35899 * 120.05214 * 179.72763 * 23 6 4 25 25 C 1.38122 * 119.97175 * 179.97438 * 2 1 3 26 26 H 1.08995 * 109.46805 * 90.00260 * 1 2 3 27 27 H 1.09007 * 109.47017 * 210.00005 * 1 2 3 28 28 H 1.08990 * 109.47275 * 329.99802 * 1 2 3 29 29 H 1.08001 * 119.94181 * 359.97438 * 3 2 1 30 30 H 1.09005 * 109.47085 * 270.02127 * 5 4 3 31 31 H 1.08991 * 109.47246 * 30.01684 * 5 4 3 32 32 H 1.09003 * 109.47396 * 150.02583 * 5 4 3 33 33 H 1.09002 * 109.47060 * 209.99949 * 7 6 4 34 34 H 1.09001 * 109.47380 * 330.00037 * 7 6 4 35 35 H 1.00899 * 111.00283 * 303.95218 * 8 7 6 36 36 H 1.09003 * 109.46871 * 35.00433 * 9 8 7 37 37 H 1.08995 * 109.47731 * 59.99955 * 10 9 8 38 38 H 1.08996 * 109.47268 * 180.02562 * 10 9 8 39 39 H 1.08996 * 109.47288 * 179.97438 * 11 10 9 40 40 H 1.08996 * 109.46365 * 60.00121 * 11 10 9 41 41 H 1.08993 * 109.47731 * 299.99316 * 12 11 10 42 42 H 0.96996 * 120.00079 * 180.02562 * 16 15 13 43 43 H 1.09005 * 109.47372 * 179.97438 * 21 12 11 44 44 H 1.09001 * 109.47008 * 59.99715 * 21 12 11 45 45 H 1.09001 * 109.47247 * 299.99755 * 22 21 12 46 46 H 1.08998 * 109.46901 * 179.97438 * 22 21 12 47 47 H 0.96697 * 114.00090 * 90.00217 * 24 23 6 48 48 H 1.08002 * 120.03327 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2013 0.0005 5 6 4.3300 2.5086 0.0011 6 6 4.2752 0.0071 0.0005 7 6 5.7822 0.0115 0.0005 8 7 6.2718 0.0130 1.3855 9 6 7.7404 0.0168 1.4247 10 6 8.2572 -1.4189 1.3129 11 6 7.7180 -2.2476 2.4807 12 6 8.1913 -1.6365 3.8010 13 6 7.6597 -2.4524 4.9512 14 1 7.0179 -1.9926 5.6881 15 6 7.9930 -3.7855 5.0628 16 7 8.7744 -4.3454 4.1652 17 14 7.3347 -4.7966 6.4889 18 1 6.0376 -5.4090 6.1044 19 1 8.3067 -5.8673 6.8268 20 1 7.1365 -3.9175 7.6691 21 6 7.6745 -0.2008 3.9129 22 6 8.2138 0.6278 2.7452 23 6 3.5846 -1.1959 -0.0048 24 8 4.2659 -2.3717 -0.0104 25 6 2.1970 -1.1965 0.0005 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8899 0.5138 29 1 1.6566 2.1324 -0.0004 30 1 4.5108 2.8242 -1.0265 31 1 3.7387 3.2663 0.5151 32 1 5.2828 2.3809 0.5149 33 1 6.1482 -0.8774 -0.5133 34 1 6.1430 0.9026 -0.5133 35 1 5.8941 0.7933 1.9018 36 1 8.1245 0.6071 0.5928 37 1 7.9200 -1.8543 0.3723 38 1 9.3467 -1.4162 1.3424 39 1 8.0858 -3.2705 2.4007 40 1 6.6284 -2.2503 2.4515 41 1 9.2809 -1.6337 3.8301 42 1 9.0086 -5.2834 4.2436 43 1 8.0114 0.2344 4.8538 44 1 6.5849 -0.2035 3.8838 45 1 9.3034 0.6306 2.7742 46 1 7.8452 1.6505 2.8246 47 1 4.4633 -2.7161 0.8713 48 1 1.6571 -2.1319 0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173334891.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:42 Heat of formation + Delta-G solvation = -63.934849 kcal Electronic energy + Delta-G solvation = -25678.510589 eV Core-core repulsion = 22310.189159 eV Total energy + Delta-G solvation = -3368.321430 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.11363 -39.67302 -37.83928 -36.39458 -34.82605 -33.43485 -31.67906 -31.29379 -30.52813 -28.28803 -27.96619 -26.34358 -24.62088 -23.15739 -22.80526 -22.20224 -21.09075 -19.70818 -18.64062 -18.31988 -17.44981 -17.08982 -16.57504 -16.14125 -15.99777 -15.60431 -15.42661 -14.73756 -14.66322 -14.32563 -14.18335 -13.99089 -13.97703 -13.79325 -13.51671 -13.42184 -13.19410 -12.99025 -12.90378 -12.73950 -12.55084 -12.45203 -12.26267 -12.15155 -11.98482 -11.83713 -11.78271 -11.55046 -11.23678 -11.07915 -10.64663 -10.35810 -10.22565 -9.47164 -9.36818 -9.08118 -7.99947 -6.13253 0.33767 0.38575 1.41327 1.42239 1.51830 2.47149 2.60893 3.25503 3.35829 3.50100 3.85384 3.87970 4.01853 4.10145 4.16773 4.26306 4.34844 4.43288 4.54005 4.63060 4.68029 4.72288 4.76597 4.80556 4.84801 4.86751 4.94156 4.96681 4.98719 5.04966 5.08719 5.14754 5.19855 5.23279 5.35126 5.38669 5.50702 5.55146 5.62284 5.66810 5.70419 5.73621 5.88670 5.99404 6.21126 6.25587 6.35856 6.54130 6.64888 6.84504 7.00984 7.53792 9.02913 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.014673 B = 0.004181 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.795844 B = 6694.915307 C = 7667.059371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.072 4.072 3 C -0.138 4.138 4 C -0.065 4.065 5 C -0.113 4.113 6 C -0.126 4.126 7 C 0.110 3.890 8 N -0.672 5.672 9 C 0.104 3.896 10 C -0.100 4.100 11 C -0.079 4.079 12 C 0.049 3.951 13 C -0.528 4.528 14 H 0.046 0.954 15 C 0.013 3.987 16 N -0.916 5.916 17 Si 0.946 3.054 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.270 1.270 21 C -0.092 4.092 22 C -0.111 4.111 23 C 0.114 3.886 24 O -0.511 6.511 25 C -0.172 4.172 26 H 0.081 0.919 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.147 0.853 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.049 0.951 35 H 0.341 0.659 36 H 0.049 0.951 37 H 0.043 0.957 38 H 0.040 0.960 39 H 0.040 0.960 40 H 0.038 0.962 41 H -0.019 1.019 42 H 0.257 0.743 43 H 0.034 0.966 44 H 0.054 0.946 45 H 0.058 0.942 46 H 0.076 0.924 47 H 0.401 0.599 48 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.228 14.258 -10.638 22.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.072 4.072 3 C -0.156 4.156 4 C -0.066 4.066 5 C -0.170 4.170 6 C -0.127 4.127 7 C -0.018 4.018 8 N -0.305 5.305 9 C -0.006 4.006 10 C -0.138 4.138 11 C -0.117 4.117 12 C 0.031 3.969 13 C -0.566 4.566 14 H 0.064 0.936 15 C -0.185 4.185 16 N -0.557 5.557 17 Si 0.772 3.228 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.195 1.195 21 C -0.130 4.130 22 C -0.148 4.148 23 C 0.069 3.931 24 O -0.323 6.323 25 C -0.191 4.191 26 H 0.099 0.901 27 H 0.087 0.913 28 H 0.100 0.900 29 H 0.165 0.835 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.161 0.839 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.000 1.000 42 H 0.066 0.934 43 H 0.053 0.947 44 H 0.073 0.927 45 H 0.077 0.923 46 H 0.094 0.906 47 H 0.259 0.741 48 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -13.198 13.470 -11.201 21.934 hybrid contribution 0.375 -0.629 1.077 1.302 sum -12.824 12.841 -10.124 20.781 Atomic orbital electron populations 1.20835 0.88984 1.03716 1.03225 1.20081 0.97534 0.92128 0.97497 1.21173 0.93204 0.98435 1.02792 1.19947 0.94176 0.94801 0.97686 1.20863 0.99892 0.93042 1.03182 1.20054 0.95794 0.92611 1.04274 1.20667 0.90053 1.00758 0.90316 1.60356 1.07429 1.50347 1.12364 1.21354 0.87241 0.95417 0.96546 1.21494 0.98209 0.95913 0.98165 1.21099 0.98383 0.98533 0.93683 1.18577 0.93179 0.91806 0.93335 1.21634 1.29575 0.95457 1.09966 0.93577 1.25670 0.95509 0.99025 0.98275 1.70048 1.37320 1.12222 1.36062 0.85749 0.78114 0.78552 0.80369 1.20293 1.21153 1.19476 1.21356 0.99915 0.95764 0.95956 1.21677 1.00394 0.98500 0.94264 1.18562 0.90178 0.85325 0.99077 1.84666 1.76513 1.36301 1.34859 1.21442 0.93125 0.99312 1.05206 0.90058 0.91261 0.89973 0.83506 0.90058 0.89629 0.91863 0.91920 0.93282 0.83909 0.93269 0.93801 0.94083 0.94108 0.94301 1.00042 0.93433 0.94750 0.92726 0.92319 0.90592 0.74129 0.85397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.56 10.01 71.24 0.71 -0.84 16 2 C -0.07 -1.49 5.88 -19.88 -0.12 -1.61 16 3 C -0.14 -2.69 9.35 22.28 0.21 -2.48 16 4 C -0.07 -1.41 5.88 -19.88 -0.12 -1.53 16 5 C -0.11 -1.79 9.19 71.24 0.65 -1.14 16 6 C -0.13 -3.36 5.41 -19.77 -0.11 -3.47 16 7 C 0.11 2.99 4.63 85.56 0.40 3.39 16 8 N -0.67 -19.72 4.81 -495.56 -2.39 -22.10 16 9 C 0.10 3.24 2.82 44.91 0.13 3.37 16 10 C -0.10 -3.88 5.53 30.60 0.17 -3.72 16 11 C -0.08 -3.79 4.82 30.60 0.15 -3.64 16 12 C 0.05 2.51 2.10 -11.54 -0.02 2.48 16 13 C -0.53 -29.85 8.56 25.60 0.22 -29.63 16 14 H 0.05 2.58 7.74 -2.91 -0.02 2.56 16 15 C 0.01 0.75 5.30 84.65 0.45 1.20 16 16 N -0.92 -54.48 11.32 21.45 0.24 -54.23 16 17 Si 0.95 44.83 29.54 68.60 2.03 46.86 16 18 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 19 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 20 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 21 C -0.09 -3.76 4.98 30.60 0.15 -3.60 16 22 C -0.11 -3.53 5.30 30.59 0.16 -3.37 16 23 C 0.11 3.30 6.68 22.51 0.15 3.45 16 24 O -0.51 -16.17 12.54 -92.41 -1.16 -17.33 16 25 C -0.17 -4.36 9.64 22.37 0.22 -4.14 16 26 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.07 0.94 8.08 -2.38 -0.02 0.92 16 28 H 0.08 0.90 8.08 -2.39 -0.02 0.88 16 29 H 0.15 2.01 8.06 -2.91 -0.02 1.98 16 30 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 31 H 0.08 1.05 8.08 -2.39 -0.02 1.03 16 32 H 0.06 1.05 6.03 -2.39 -0.01 1.04 16 33 H 0.06 1.98 6.82 -2.39 -0.02 1.96 16 34 H 0.05 1.15 6.61 -2.39 -0.02 1.13 16 35 H 0.34 9.23 7.49 -89.69 -0.67 8.56 16 36 H 0.05 1.35 7.80 -2.39 -0.02 1.33 16 37 H 0.04 1.66 7.45 -2.39 -0.02 1.64 16 38 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.04 2.28 6.07 -2.39 -0.01 2.26 16 40 H 0.04 1.88 7.60 -2.39 -0.02 1.86 16 41 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 42 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 43 H 0.03 1.39 8.14 -2.38 -0.02 1.38 16 44 H 0.05 2.22 7.48 -2.39 -0.02 2.21 16 45 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 46 H 0.08 1.95 8.12 -2.39 -0.02 1.93 16 47 H 0.40 11.80 9.06 -74.06 -0.67 11.13 16 48 H 0.13 2.99 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -65.21 371.44 1.74 -63.48 By element: Atomic # 1 Polarization: 29.00 SS G_CDS: -0.39 Total: 28.61 kcal Atomic # 6 Polarization: -48.68 SS G_CDS: 3.40 Total: -45.28 kcal Atomic # 7 Polarization: -74.19 SS G_CDS: -2.14 Total: -76.33 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -1.16 Total: -17.33 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -65.21 1.74 -63.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173334891.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.456 kcal (2) G-P(sol) polarization free energy of solvation -65.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds