Wall clock time and date at job start Tue Mar 31 2020 08:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46913 * 2 1 4 4 C 1.52995 * 109.47289 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47598 * 180.02562 * 4 3 2 6 6 C 1.50694 * 109.47433 * 179.97438 * 5 4 3 7 7 C 1.38364 * 119.85383 * 269.72217 * 6 5 4 8 8 C 1.37956 * 120.14261 * 180.27116 * 7 6 5 9 9 C 1.39576 * 119.85607 * 0.02562 * 8 7 6 10 10 C 1.47848 * 120.14271 * 179.97438 * 9 8 7 11 11 O 1.21548 * 119.99946 * 180.02562 * 10 9 8 12 12 N 1.34776 * 119.99889 * 0.02562 * 10 9 8 13 13 C 1.46501 * 119.99681 * 180.02562 * 12 10 9 14 14 H 1.08997 * 109.47104 * 35.00048 * 13 12 10 15 15 C 1.50697 * 109.47070 * 154.99786 * 13 12 10 16 16 H 1.08005 * 120.00372 * 0.02562 * 15 13 12 17 17 C 1.37878 * 120.00180 * 179.97438 * 15 13 12 18 18 N 1.31517 * 119.99688 * 0.02562 * 17 15 13 19 19 Si 1.86799 * 120.00156 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47204 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47311 * 119.99892 * 19 17 15 22 22 H 1.48500 * 109.46893 * 239.99873 * 19 17 15 23 23 C 1.52997 * 109.47284 * 275.00029 * 13 12 10 24 24 C 1.53002 * 109.47137 * 64.99942 * 23 13 12 25 25 C 1.39575 * 119.71175 * 359.97438 * 9 8 7 26 26 C 1.37955 * 119.85210 * 0.02562 * 25 9 8 27 27 H 1.09001 * 109.47021 * 180.02562 * 1 2 3 28 28 H 1.08990 * 109.47357 * 299.99732 * 1 2 3 29 29 H 1.09002 * 109.47295 * 60.00323 * 1 2 3 30 30 H 1.09004 * 109.46868 * 240.00163 * 2 1 3 31 31 H 1.08990 * 109.47309 * 120.00057 * 2 1 3 32 32 H 1.09003 * 109.47079 * 59.99845 * 3 2 1 33 33 H 1.09007 * 109.47316 * 300.00091 * 3 2 1 34 34 H 1.09003 * 109.47345 * 59.99813 * 4 3 2 35 35 H 1.09007 * 109.46857 * 300.00178 * 4 3 2 36 36 H 1.09003 * 109.47082 * 59.99460 * 5 4 3 37 37 H 1.09002 * 109.46564 * 299.99738 * 5 4 3 38 38 H 1.07993 * 119.92279 * 0.25878 * 7 6 5 39 39 H 1.08000 * 120.06785 * 179.97438 * 8 7 6 40 40 H 0.96994 * 120.00403 * 0.02562 * 12 10 9 41 41 H 0.97003 * 119.99882 * 180.02562 * 18 17 15 42 42 H 1.08994 * 109.47309 * 185.00152 * 23 13 12 43 43 H 1.09001 * 109.46930 * 305.00110 * 23 13 12 44 44 H 1.09005 * 109.47115 * 179.97438 * 24 23 13 45 45 H 1.08994 * 109.47193 * 300.00281 * 24 23 13 46 46 H 1.09001 * 109.47073 * 60.00256 * 24 23 13 47 47 H 1.08000 * 120.07334 * 179.97438 * 25 9 8 48 48 H 1.08004 * 119.92775 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0800 2.8851 0.0000 6 6 5.5869 2.8852 0.0000 7 6 6.2756 2.8905 1.2000 8 6 7.6552 2.8962 1.2070 9 6 8.3561 2.8972 -0.0001 10 6 9.8346 2.9039 0.0000 11 8 10.4423 2.9052 -1.0526 12 7 10.5084 2.9085 1.1672 13 6 11.9734 2.9157 1.1672 14 1 12.3338 3.5060 0.3247 15 6 12.4727 3.5202 2.4541 16 1 11.7692 3.8642 3.1979 17 6 13.8278 3.6331 2.6826 18 7 14.6844 3.2138 1.7771 19 14 14.4467 4.3817 4.2782 20 1 13.2898 4.7722 5.1233 21 1 15.2762 3.3859 5.0031 22 1 15.2663 5.5827 3.9762 23 6 12.4905 1.4811 1.0431 24 6 12.0885 0.9101 -0.3182 25 6 7.6552 2.8918 -1.2071 26 6 6.2757 2.8861 -1.2000 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 3.9330 0.9289 -0.8909 35 1 3.9336 0.9286 0.8892 36 1 3.7169 3.3985 0.8904 37 1 3.7162 3.3994 -0.8896 38 1 5.7321 2.8903 2.1332 39 1 8.1916 2.9008 2.1443 40 1 10.0234 2.9071 2.0072 41 1 15.6378 3.2929 1.9380 42 1 13.5767 1.4775 1.1322 43 1 12.0588 0.8696 1.8354 44 1 12.4573 -0.1119 -0.4068 45 1 11.0022 0.9137 -0.4074 46 1 12.5201 1.5216 -1.1106 47 1 8.1917 2.8929 -2.1444 48 1 5.7321 2.8823 -2.1333 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189205338.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:49:03 Heat of formation + Delta-G solvation = -68.124380 kcal Electronic energy + Delta-G solvation = -23986.973627 eV Core-core repulsion = 20618.470526 eV Total energy + Delta-G solvation = -3368.503101 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.20389 -39.67573 -37.13080 -36.83789 -34.54162 -34.08099 -32.87364 -31.81250 -30.95709 -28.99360 -27.32494 -25.16806 -24.13954 -23.52311 -22.51964 -21.79004 -21.65773 -20.97350 -19.42598 -17.86757 -17.39008 -16.71606 -16.47449 -16.27580 -16.22369 -15.67033 -15.54139 -14.86316 -14.66712 -14.52880 -14.46069 -14.29856 -14.29255 -13.89489 -13.54666 -13.22521 -13.19799 -12.89644 -12.81306 -12.77693 -12.71424 -12.42451 -12.16746 -12.07738 -12.02858 -11.76733 -11.62464 -11.61058 -11.45151 -11.29150 -11.06258 -10.76422 -10.54487 -9.92222 -9.79961 -9.51777 -8.17321 -6.34917 -0.07320 0.44955 1.43504 1.44469 1.56518 2.00649 2.34478 2.61553 2.94347 3.12217 3.70868 3.85635 3.96342 4.05122 4.10979 4.14872 4.32835 4.35852 4.45952 4.47549 4.54350 4.56527 4.62120 4.72470 4.73425 4.82761 4.93153 4.96676 5.04201 5.07943 5.10730 5.11762 5.17829 5.22579 5.29231 5.38260 5.41074 5.42086 5.46768 5.47755 5.54484 5.58220 5.59868 5.67433 5.76970 5.90754 6.00201 6.14477 6.72412 6.95079 7.31334 7.52734 8.88450 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.023964 B = 0.002439 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.146291 B =11479.037300 C =11922.487897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.129 4.129 3 C -0.116 4.116 4 C -0.112 4.112 5 C -0.078 4.078 6 C -0.056 4.056 7 C -0.123 4.123 8 C -0.087 4.087 9 C -0.155 4.155 10 C 0.538 3.462 11 O -0.589 6.589 12 N -0.699 5.699 13 C 0.277 3.723 14 H -0.002 1.002 15 C -0.548 4.548 16 H 0.072 0.928 17 C 0.014 3.986 18 N -0.914 5.914 19 Si 0.972 3.028 20 H -0.260 1.260 21 H -0.278 1.278 22 H -0.284 1.284 23 C -0.120 4.120 24 C -0.124 4.124 25 C -0.076 4.076 26 C -0.125 4.125 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.155 0.845 39 H 0.136 0.864 40 H 0.401 0.599 41 H 0.265 0.735 42 H 0.074 0.926 43 H 0.041 0.959 44 H 0.047 0.953 45 H 0.040 0.960 46 H 0.026 0.974 47 H 0.119 0.881 48 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.178 -3.636 -0.301 27.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.166 4.166 3 C -0.153 4.153 4 C -0.150 4.150 5 C -0.115 4.115 6 C -0.056 4.056 7 C -0.140 4.140 8 C -0.106 4.106 9 C -0.158 4.158 10 C 0.326 3.674 11 O -0.472 6.472 12 N -0.348 5.348 13 C 0.173 3.827 14 H 0.016 0.984 15 C -0.586 4.586 16 H 0.090 0.910 17 C -0.186 4.186 18 N -0.553 5.553 19 Si 0.797 3.203 20 H -0.184 1.184 21 H -0.203 1.203 22 H -0.210 1.210 23 C -0.159 4.159 24 C -0.181 4.181 25 C -0.096 4.096 26 C -0.143 4.143 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.173 0.827 39 H 0.154 0.846 40 H 0.237 0.763 41 H 0.074 0.926 42 H 0.093 0.907 43 H 0.060 0.940 44 H 0.066 0.934 45 H 0.059 0.941 46 H 0.045 0.955 47 H 0.137 0.863 48 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -26.527 -3.649 -1.044 26.797 hybrid contribution 1.066 0.338 0.714 1.327 sum -25.461 -3.311 -0.330 25.677 Atomic orbital electron populations 1.21779 0.95540 1.01740 1.01988 1.21557 0.96172 0.97094 1.01822 1.21598 0.94388 0.96748 1.02576 1.21559 0.95764 0.95432 1.02198 1.20709 0.88360 0.98018 1.04387 1.20420 0.97318 0.95384 0.92503 1.21283 0.92843 1.00662 0.99243 1.21515 0.95516 0.96920 0.96631 1.20042 0.91517 1.08133 0.96080 1.18868 0.88272 0.76258 0.83963 1.90694 1.71000 1.52801 1.32676 1.46207 1.08642 1.72155 1.07779 1.18426 0.75178 0.93150 0.95913 0.98394 1.21584 0.92685 1.41374 1.02954 0.91030 1.25798 0.96827 0.95523 1.00430 1.70059 1.02546 1.46808 1.35850 0.85290 0.78409 0.77770 0.78819 1.18394 1.20342 1.21036 1.21782 1.02741 0.96639 0.94749 1.21679 0.99913 0.98791 0.97717 1.21297 0.95070 0.96244 0.96939 1.21229 0.92496 1.01217 0.99371 0.92764 0.92520 0.92571 0.92413 0.92306 0.91386 0.91538 0.92370 0.92105 0.89396 0.89713 0.82740 0.84646 0.76275 0.92553 0.90738 0.94022 0.93409 0.94131 0.95513 0.86345 0.83327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.91 71.98 0.71 -0.69 16 2 C -0.13 -1.34 5.93 30.59 0.18 -1.16 16 3 C -0.12 -1.11 5.21 30.59 0.16 -0.95 16 4 C -0.11 -1.31 5.20 30.59 0.16 -1.15 16 5 C -0.08 -0.92 5.34 29.85 0.16 -0.77 16 6 C -0.06 -1.03 5.14 -19.81 -0.10 -1.13 16 7 C -0.12 -2.43 9.68 22.23 0.22 -2.21 16 8 C -0.09 -2.27 9.54 22.53 0.21 -2.06 16 9 C -0.15 -5.17 5.87 -20.09 -0.12 -5.29 16 10 C 0.54 23.23 6.34 86.79 0.55 23.78 16 11 O -0.59 -29.96 13.48 -3.87 -0.05 -30.01 16 12 N -0.70 -30.57 4.97 -448.99 -2.23 -32.80 16 13 C 0.28 14.65 2.24 44.24 0.10 14.75 16 14 H 0.00 -0.12 7.58 -2.39 -0.02 -0.13 16 15 C -0.55 -29.44 8.73 25.60 0.22 -29.22 16 16 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 17 C 0.01 0.78 5.29 84.65 0.45 1.23 16 18 N -0.91 -52.82 11.29 21.45 0.24 -52.57 16 19 Si 0.97 42.36 29.54 68.60 2.03 44.38 16 20 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 21 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 22 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 23 C -0.12 -6.11 5.45 30.59 0.17 -5.94 16 24 C -0.12 -5.83 8.51 71.98 0.61 -5.22 16 25 C -0.08 -2.28 9.60 22.53 0.22 -2.06 16 26 C -0.13 -2.73 9.68 22.23 0.22 -2.51 16 27 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.06 0.48 8.14 -2.39 -0.02 0.47 16 29 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 31 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 34 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 36 H 0.09 0.85 8.08 -2.39 -0.02 0.83 16 37 H 0.08 0.86 8.08 -2.39 -0.02 0.84 16 38 H 0.15 2.12 8.06 -2.91 -0.02 2.09 16 39 H 0.14 3.20 6.41 -2.91 -0.02 3.19 16 40 H 0.40 14.93 6.57 -92.71 -0.61 14.32 16 41 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 42 H 0.07 4.19 5.95 -2.39 -0.01 4.17 16 43 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 45 H 0.04 1.87 5.64 -2.39 -0.01 1.86 16 46 H 0.03 1.34 7.84 -2.39 -0.02 1.32 16 47 H 0.12 3.80 7.65 -2.91 -0.02 3.78 16 48 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -67.67 383.81 4.41 -63.26 By element: Atomic # 1 Polarization: 28.03 SS G_CDS: 0.31 Total: 28.35 kcal Atomic # 6 Polarization: -24.72 SS G_CDS: 4.12 Total: -20.60 kcal Atomic # 7 Polarization: -83.39 SS G_CDS: -1.99 Total: -85.38 kcal Atomic # 8 Polarization: -29.96 SS G_CDS: -0.05 Total: -30.01 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.38 kcal Total: -67.67 4.41 -63.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189205338.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.865 kcal (2) G-P(sol) polarization free energy of solvation -67.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds