Wall clock time and date at job start Tue Mar 31 2020 08:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46990 * 2 1 4 4 C 1.52995 * 109.47336 * 239.99742 * 2 1 3 5 5 C 1.50703 * 109.47030 * 119.99853 * 2 1 3 6 6 C 1.38227 * 120.00137 * 59.99908 * 5 2 1 7 7 C 1.38230 * 120.00339 * 180.02562 * 6 5 2 8 8 C 1.38243 * 120.00057 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.00252 * 179.97438 * 8 7 6 10 10 O 1.42895 * 109.47071 * 89.99767 * 9 8 7 11 11 C 1.42904 * 114.00030 * 180.02562 * 10 9 8 12 12 C 1.53513 * 114.16833 * 210.00050 * 11 10 9 13 13 N 1.47484 * 87.93060 * 220.32420 * 12 11 10 14 14 C 1.46895 * 110.99756 * 138.70311 * 13 12 11 15 15 C 1.50706 * 109.47182 * 170.00145 * 14 13 12 16 16 H 1.08000 * 119.99302 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00436 * 179.72677 * 15 14 13 18 18 N 1.31515 * 119.99684 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00405 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47154 * 89.99418 * 19 17 15 21 21 H 1.48493 * 109.47010 * 209.99942 * 19 17 15 22 22 H 1.48502 * 109.46736 * 329.99638 * 19 17 15 23 23 C 1.47477 * 87.83167 * 27.01125 * 13 12 11 24 24 C 1.38237 * 119.99616 * 0.25025 * 8 7 6 25 25 C 1.38235 * 120.00086 * 359.49677 * 24 8 7 26 26 H 1.09006 * 109.47034 * 300.00240 * 1 2 3 27 27 H 1.09002 * 109.46934 * 60.00039 * 1 2 3 28 28 H 1.08991 * 109.47291 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46863 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.46928 * 299.99733 * 3 2 1 31 31 H 1.08997 * 109.47571 * 60.00187 * 3 2 1 32 32 H 1.08996 * 109.46927 * 300.00583 * 4 2 1 33 33 H 1.09002 * 109.46930 * 60.00216 * 4 2 1 34 34 H 1.08998 * 109.47381 * 180.02562 * 4 2 1 35 35 H 1.08004 * 119.99859 * 0.02562 * 6 5 2 36 36 H 1.08000 * 120.00645 * 179.97438 * 7 6 5 37 37 H 1.09001 * 109.47036 * 329.99976 * 9 8 7 38 38 H 1.08997 * 109.46955 * 209.99734 * 9 8 7 39 39 H 1.09003 * 113.37734 * 343.07418 * 11 10 9 40 40 H 1.09005 * 113.47855 * 105.56295 * 12 11 10 41 41 H 1.08997 * 113.47719 * 335.09320 * 12 11 10 42 42 H 1.09001 * 109.47613 * 50.00491 * 14 13 12 43 43 H 1.08998 * 109.47678 * 290.00386 * 14 13 12 44 44 H 0.97004 * 120.00247 * 180.02562 * 18 17 15 45 45 H 1.09000 * 113.48071 * 87.76093 * 23 13 12 46 46 H 1.09004 * 113.47566 * 218.21901 * 23 13 12 47 47 H 1.08001 * 120.00018 * 179.72890 * 24 8 7 48 48 H 1.07997 * 120.00324 * 180.23010 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 2.0323 -0.7104 1.2305 6 6 1.6984 -2.0338 1.4493 7 6 2.1587 -2.6852 2.5782 8 6 2.9526 -2.0131 3.4888 9 6 3.4539 -2.7232 4.7198 10 8 4.7130 -3.3366 4.4363 11 6 5.2788 -4.0408 5.5436 12 6 6.8137 -4.0709 5.5513 13 7 6.7307 -5.4747 5.9957 14 6 7.7288 -6.3044 5.3079 15 6 7.7837 -7.6643 5.9551 16 1 7.1410 -7.8896 6.7933 17 6 8.6499 -8.6227 5.4734 18 7 9.4279 -8.3503 4.4486 19 14 8.7174 -10.3085 6.2751 20 1 7.7430 -11.2116 5.6117 21 1 10.0856 -10.8684 6.1358 22 1 8.3771 -10.1855 7.7154 23 6 5.4222 -5.5527 5.3199 24 6 3.2818 -0.6880 3.2728 25 6 2.8258 -0.0381 2.1412 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6766 -1.7489 -1.2491 33 1 1.6767 -0.2074 -2.1392 34 1 3.1300 -0.7217 -1.2489 35 1 1.0778 -2.5588 0.7382 36 1 1.8974 -3.7191 2.7495 37 1 2.7358 -3.4878 5.0160 38 1 3.5743 -2.0042 5.5302 39 1 4.8329 -3.7715 6.5010 40 1 7.2573 -3.4062 6.2927 41 1 7.2552 -3.9540 4.5616 42 1 8.7072 -5.8290 5.3780 43 1 7.4515 -6.4121 4.2593 44 1 10.0371 -9.0247 4.1094 45 1 5.4924 -5.8315 4.2685 46 1 4.6865 -6.1440 5.8651 47 1 3.8984 -0.1616 3.9864 48 1 3.0861 0.9961 1.9706 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204680780.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:38:53 Heat of formation + Delta-G solvation = 2.465001 kcal Electronic energy + Delta-G solvation = -23878.372979 eV Core-core repulsion = 20512.930863 eV Total energy + Delta-G solvation = -3365.442116 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.16139 -39.46346 -37.28841 -35.94193 -32.83714 -31.25639 -31.12370 -29.02679 -27.68400 -27.55601 -26.10619 -25.36117 -24.78002 -22.49566 -22.01773 -21.52392 -19.49118 -19.32615 -17.03617 -16.73727 -16.14524 -15.84959 -15.47937 -14.98345 -14.61034 -14.58144 -14.41386 -14.28222 -13.89760 -13.60322 -13.54805 -13.14366 -12.94953 -12.55738 -12.32630 -12.24174 -12.09295 -12.00774 -11.97779 -11.64117 -11.48174 -11.28630 -11.17072 -11.09004 -10.83492 -10.75331 -10.69530 -10.52146 -10.17015 -9.73684 -9.20464 -9.11096 -8.99853 -8.72644 -8.42155 -7.89892 -6.01546 -4.02923 1.14823 1.31931 3.33163 3.38748 3.43593 3.46801 4.08835 4.30109 4.43433 4.45018 4.68132 4.76399 4.84977 4.89564 4.94517 4.98462 5.02264 5.19283 5.25696 5.29520 5.31906 5.32218 5.33635 5.43636 5.47055 5.53559 5.55518 5.57832 5.68009 5.74650 5.89820 5.92025 5.93310 5.97424 5.99082 6.11337 6.20322 6.32736 6.34810 6.43077 6.48488 6.53161 6.61912 6.88281 7.22173 7.46444 7.66868 7.87507 8.12019 8.46803 9.04291 9.60876 11.09590 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.025847 B = 0.002211 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.033724 B =12658.372949 C =13026.288501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.031 4.031 3 C -0.144 4.144 4 C -0.139 4.139 5 C -0.068 4.068 6 C -0.119 4.119 7 C -0.095 4.095 8 C -0.090 4.090 9 C 0.101 3.899 10 O -0.368 6.368 11 C 0.051 3.949 12 C -0.003 4.003 13 N -0.464 5.464 14 C 0.161 3.839 15 C -0.504 4.504 16 H 0.063 0.937 17 C 0.053 3.947 18 N -0.900 5.900 19 Si 0.900 3.100 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.273 1.273 23 C -0.005 4.005 24 C -0.097 4.097 25 C -0.126 4.126 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.029 0.971 43 H 0.005 0.995 44 H 0.261 0.739 45 H 0.071 0.929 46 H 0.075 0.925 47 H 0.122 0.878 48 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.821 19.861 -8.020 28.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.031 4.031 3 C -0.201 4.201 4 C -0.197 4.197 5 C -0.068 4.068 6 C -0.137 4.137 7 C -0.113 4.113 8 C -0.090 4.090 9 C 0.025 3.975 10 O -0.286 6.286 11 C -0.008 4.008 12 C -0.132 4.132 13 N -0.189 5.189 14 C 0.035 3.965 15 C -0.543 4.543 16 H 0.081 0.919 17 C -0.148 4.148 18 N -0.539 5.539 19 Si 0.728 3.272 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.198 1.198 23 C -0.134 4.134 24 C -0.115 4.115 25 C -0.144 4.144 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.138 0.862 36 H 0.141 0.859 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.112 0.888 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.047 0.953 43 H 0.023 0.977 44 H 0.071 0.929 45 H 0.089 0.911 46 H 0.093 0.907 47 H 0.140 0.860 48 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -18.486 19.591 -7.611 27.990 hybrid contribution 0.146 -0.957 -0.327 1.021 sum -18.340 18.634 -7.938 27.324 Atomic orbital electron populations 1.21886 0.93717 1.02098 1.01796 1.19515 0.95660 0.95061 0.92839 1.21964 1.01344 0.94955 1.01859 1.21895 1.01479 1.00247 0.96031 1.19817 0.97371 0.94070 0.95574 1.20930 1.00862 0.94330 0.97611 1.21066 0.97015 0.99579 0.93662 1.19661 0.98420 0.94121 0.96804 1.21321 0.86564 0.95587 0.94051 1.88049 1.34235 1.69739 1.36612 1.24032 0.94704 0.92661 0.89361 1.24045 0.93881 0.94883 1.00377 1.68952 1.03240 1.01287 1.45387 1.20260 0.90647 0.92983 0.92595 1.21099 1.21369 0.96187 1.15659 0.91856 1.25018 0.95574 0.99056 0.95168 1.69963 1.24486 1.34628 1.24864 0.86461 0.77164 0.83785 0.79808 1.20713 1.21234 1.19754 1.24239 0.95297 0.94648 0.99225 1.21061 0.98649 0.94265 0.97493 1.21136 0.98668 1.00226 0.94325 0.92523 0.92391 0.92388 0.92157 0.92415 0.92280 0.92349 0.92391 0.92331 0.86173 0.85892 0.92533 0.92648 0.88814 0.90383 0.91302 0.95255 0.97694 0.92907 0.91092 0.90652 0.86008 0.85657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 8.29 37.16 0.31 -0.60 16 2 C -0.03 -0.23 0.85 -155.66 -0.13 -0.36 16 3 C -0.14 -0.94 7.13 37.16 0.27 -0.67 16 4 C -0.14 -1.03 8.29 37.15 0.31 -0.72 16 5 C -0.07 -0.66 4.76 -104.62 -0.50 -1.15 16 6 C -0.12 -1.21 8.71 -39.59 -0.34 -1.56 16 7 C -0.10 -1.08 9.70 -39.58 -0.38 -1.47 16 8 C -0.09 -1.08 5.51 -104.62 -0.58 -1.66 16 9 C 0.10 1.25 5.91 36.00 0.21 1.46 16 10 O -0.37 -5.88 10.37 -35.23 -0.37 -6.24 16 11 C 0.05 0.83 4.65 -26.21 -0.12 0.71 16 12 C 0.00 -0.05 7.52 -7.55 -0.06 -0.10 16 13 N -0.46 -10.53 6.32 -246.14 -1.55 -12.09 16 14 C 0.16 4.37 4.57 -4.98 -0.02 4.35 16 15 C -0.50 -14.76 9.39 -34.44 -0.32 -15.08 16 16 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 17 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 18 N -0.90 -27.37 13.29 55.43 0.74 -26.64 16 19 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 23 C 0.00 -0.09 7.55 -7.56 -0.06 -0.15 16 24 C -0.10 -1.06 9.70 -39.58 -0.38 -1.45 16 25 C -0.13 -1.24 8.98 -39.58 -0.36 -1.60 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.38 7.39 -51.93 -0.38 -0.01 16 29 H 0.06 0.41 7.51 -51.93 -0.39 0.02 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.37 7.51 -51.93 -0.39 -0.02 16 32 H 0.06 0.43 7.39 -51.93 -0.38 0.05 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.12 1.02 7.10 -52.48 -0.37 0.65 16 36 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 37 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 38 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 39 H 0.09 1.35 7.88 -51.93 -0.41 0.94 16 40 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 41 H 0.07 1.37 7.91 -51.93 -0.41 0.95 16 42 H 0.03 0.84 8.08 -51.93 -0.42 0.42 16 43 H 0.01 0.15 7.30 -51.93 -0.38 -0.23 16 44 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 45 H 0.07 1.50 7.42 -51.93 -0.39 1.11 16 46 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 47 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 48 H 0.13 1.01 5.89 -52.49 -0.31 0.70 16 LS Contribution 384.60 15.07 5.80 5.80 Total: -1.00 -31.88 384.60 -11.09 -42.98 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -8.42 Total: -2.32 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: -2.26 Total: -18.60 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: -0.82 Total: -38.72 kcal Atomic # 8 Polarization: -5.88 SS G_CDS: -0.37 Total: -6.24 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.88 -11.09 -42.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204680780.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.441 kcal (2) G-P(sol) polarization free energy of solvation -31.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds