Wall clock time and date at job start Tue Mar 31 2020 08:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46990 * 2 1 4 4 C 1.52995 * 109.47336 * 239.99742 * 2 1 3 5 5 C 1.50703 * 109.47030 * 119.99853 * 2 1 3 6 6 C 1.38227 * 120.00137 * 59.99908 * 5 2 1 7 7 C 1.38230 * 120.00339 * 180.02562 * 6 5 2 8 8 C 1.38243 * 120.00057 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.00252 * 179.97438 * 8 7 6 10 10 O 1.42895 * 109.47071 * 89.99767 * 9 8 7 11 11 C 1.42904 * 114.00030 * 180.02562 * 10 9 8 12 12 C 1.53513 * 114.16833 * 210.00050 * 11 10 9 13 13 N 1.47484 * 87.93060 * 220.32420 * 12 11 10 14 14 C 1.46895 * 110.99756 * 138.70311 * 13 12 11 15 15 C 1.50706 * 109.47182 * 170.00145 * 14 13 12 16 16 H 1.08000 * 119.99302 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00436 * 179.72677 * 15 14 13 18 18 N 1.31515 * 119.99684 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00405 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47154 * 89.99418 * 19 17 15 21 21 H 1.48493 * 109.47010 * 209.99942 * 19 17 15 22 22 H 1.48502 * 109.46736 * 329.99638 * 19 17 15 23 23 C 1.47477 * 87.83167 * 27.01125 * 13 12 11 24 24 C 1.38237 * 119.99616 * 0.25025 * 8 7 6 25 25 C 1.38235 * 120.00086 * 359.49677 * 24 8 7 26 26 H 1.09006 * 109.47034 * 300.00240 * 1 2 3 27 27 H 1.09002 * 109.46934 * 60.00039 * 1 2 3 28 28 H 1.08991 * 109.47291 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46863 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.46928 * 299.99733 * 3 2 1 31 31 H 1.08997 * 109.47571 * 60.00187 * 3 2 1 32 32 H 1.08996 * 109.46927 * 300.00583 * 4 2 1 33 33 H 1.09002 * 109.46930 * 60.00216 * 4 2 1 34 34 H 1.08998 * 109.47381 * 180.02562 * 4 2 1 35 35 H 1.08004 * 119.99859 * 0.02562 * 6 5 2 36 36 H 1.08000 * 120.00645 * 179.97438 * 7 6 5 37 37 H 1.09001 * 109.47036 * 329.99976 * 9 8 7 38 38 H 1.08997 * 109.46955 * 209.99734 * 9 8 7 39 39 H 1.09003 * 113.37734 * 343.07418 * 11 10 9 40 40 H 1.09005 * 113.47855 * 105.56295 * 12 11 10 41 41 H 1.08997 * 113.47719 * 335.09320 * 12 11 10 42 42 H 1.09001 * 109.47613 * 50.00491 * 14 13 12 43 43 H 1.08998 * 109.47678 * 290.00386 * 14 13 12 44 44 H 0.97004 * 120.00247 * 180.02562 * 18 17 15 45 45 H 1.09000 * 113.48071 * 87.76093 * 23 13 12 46 46 H 1.09004 * 113.47566 * 218.21901 * 23 13 12 47 47 H 1.08001 * 120.00018 * 179.72890 * 24 8 7 48 48 H 1.07997 * 120.00324 * 180.23010 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 2.0323 -0.7104 1.2305 6 6 1.6984 -2.0338 1.4493 7 6 2.1587 -2.6852 2.5782 8 6 2.9526 -2.0131 3.4888 9 6 3.4539 -2.7232 4.7198 10 8 4.7130 -3.3366 4.4363 11 6 5.2788 -4.0408 5.5436 12 6 6.8137 -4.0709 5.5513 13 7 6.7307 -5.4747 5.9957 14 6 7.7288 -6.3044 5.3079 15 6 7.7837 -7.6643 5.9551 16 1 7.1410 -7.8896 6.7933 17 6 8.6499 -8.6227 5.4734 18 7 9.4279 -8.3503 4.4486 19 14 8.7174 -10.3085 6.2751 20 1 7.7430 -11.2116 5.6117 21 1 10.0856 -10.8684 6.1358 22 1 8.3771 -10.1855 7.7154 23 6 5.4222 -5.5527 5.3199 24 6 3.2818 -0.6880 3.2728 25 6 2.8258 -0.0381 2.1412 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6766 -1.7489 -1.2491 33 1 1.6767 -0.2074 -2.1392 34 1 3.1300 -0.7217 -1.2489 35 1 1.0778 -2.5588 0.7382 36 1 1.8974 -3.7191 2.7495 37 1 2.7358 -3.4878 5.0160 38 1 3.5743 -2.0042 5.5302 39 1 4.8329 -3.7715 6.5010 40 1 7.2573 -3.4062 6.2927 41 1 7.2552 -3.9540 4.5616 42 1 8.7072 -5.8290 5.3780 43 1 7.4515 -6.4121 4.2593 44 1 10.0371 -9.0247 4.1094 45 1 5.4924 -5.8315 4.2685 46 1 4.6865 -6.1440 5.8651 47 1 3.8984 -0.1616 3.9864 48 1 3.0861 0.9961 1.9706 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204680780.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:38:52 Heat of formation + Delta-G solvation = -16.533077 kcal Electronic energy + Delta-G solvation = -23879.196797 eV Core-core repulsion = 20512.930863 eV Total energy + Delta-G solvation = -3366.265935 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.15855 -40.75930 -38.30669 -36.92610 -35.01802 -32.09763 -32.02918 -30.87527 -28.23076 -28.09635 -27.38962 -26.93289 -26.39944 -23.47107 -23.27384 -22.79222 -20.96552 -20.07158 -18.68265 -18.05452 -17.58999 -16.85415 -16.76569 -16.33326 -15.94447 -15.81740 -15.37014 -15.13601 -14.85737 -14.83027 -14.50255 -14.26632 -14.09789 -13.87564 -13.64902 -13.59997 -13.10694 -12.93124 -12.88960 -12.79790 -12.56936 -12.53807 -12.37397 -12.30645 -12.13824 -12.00990 -11.82512 -11.64363 -11.46409 -11.35834 -11.23078 -10.65053 -10.41713 -9.80882 -9.78767 -9.51965 -8.25321 -6.36690 0.32236 0.51281 1.38648 1.40955 1.53027 2.36997 2.51056 3.04578 3.07055 3.38978 3.47004 3.65270 3.79983 3.88343 4.06524 4.08288 4.12361 4.13814 4.35873 4.39418 4.41692 4.47327 4.50184 4.58208 4.64740 4.69748 4.70749 4.78933 4.83654 4.85381 4.90682 4.91883 5.00554 5.03445 5.03952 5.04713 5.15548 5.18116 5.25121 5.37663 5.44164 5.52939 5.57442 5.69028 5.71958 5.74382 6.02747 6.09905 6.27418 6.37417 6.77370 7.32975 8.86296 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.025847 B = 0.002211 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.033724 B =12658.372949 C =13026.288501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.031 4.031 3 C -0.143 4.143 4 C -0.139 4.139 5 C -0.070 4.070 6 C -0.127 4.127 7 C -0.110 4.110 8 C -0.111 4.111 9 C 0.097 3.903 10 O -0.386 6.386 11 C 0.084 3.916 12 C -0.008 4.008 13 N -0.478 5.478 14 C 0.177 3.823 15 C -0.528 4.528 16 H 0.062 0.938 17 C -0.002 4.002 18 N -0.935 5.935 19 Si 0.976 3.024 20 H -0.271 1.271 21 H -0.279 1.279 22 H -0.263 1.263 23 C -0.012 4.012 24 C -0.106 4.106 25 C -0.132 4.132 26 H 0.054 0.946 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.046 0.954 35 H 0.133 0.867 36 H 0.125 0.875 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.127 0.873 40 H 0.100 0.900 41 H 0.052 0.948 42 H 0.002 0.998 43 H -0.024 1.024 44 H 0.266 0.734 45 H 0.048 0.952 46 H 0.087 0.913 47 H 0.133 0.867 48 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.353 20.582 -7.506 29.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.031 4.031 3 C -0.201 4.201 4 C -0.196 4.196 5 C -0.070 4.070 6 C -0.145 4.145 7 C -0.128 4.128 8 C -0.111 4.111 9 C 0.022 3.978 10 O -0.305 6.305 11 C 0.025 3.975 12 C -0.137 4.137 13 N -0.202 5.202 14 C 0.050 3.950 15 C -0.566 4.566 16 H 0.080 0.920 17 C -0.200 4.200 18 N -0.576 5.576 19 Si 0.800 3.200 20 H -0.196 1.196 21 H -0.204 1.204 22 H -0.188 1.188 23 C -0.141 4.141 24 C -0.124 4.124 25 C -0.149 4.149 26 H 0.073 0.927 27 H 0.089 0.911 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.065 0.935 35 H 0.151 0.849 36 H 0.143 0.857 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.145 0.855 40 H 0.118 0.882 41 H 0.070 0.930 42 H 0.020 0.980 43 H -0.007 1.007 44 H 0.075 0.925 45 H 0.067 0.933 46 H 0.106 0.894 47 H 0.150 0.850 48 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -20.039 20.334 -7.096 29.417 hybrid contribution 0.570 -1.082 -0.574 1.351 sum -19.469 19.251 -7.671 28.434 Atomic orbital electron populations 1.21870 0.92829 1.02226 1.02356 1.19577 0.96334 0.95437 0.91784 1.21962 1.01098 0.94322 1.02670 1.21898 1.00739 1.00360 0.96640 1.20135 0.96680 0.93978 0.96168 1.21142 1.00990 0.94813 0.97525 1.21242 0.97461 0.99922 0.94223 1.19768 0.99394 0.94745 0.97234 1.21547 0.85053 0.96216 0.95017 1.88029 1.36062 1.69709 1.36676 1.23718 0.92929 0.90001 0.90815 1.24112 0.96501 0.93038 1.00062 1.68845 1.03417 1.02778 1.45161 1.19910 0.90627 0.93238 0.91243 1.21420 1.21808 0.97418 1.15946 0.91992 1.26019 0.94830 1.03554 0.95593 1.70093 1.25044 1.36259 1.26170 0.85286 0.77580 0.78141 0.79039 1.19640 1.20431 1.18771 1.24285 0.94055 0.97962 0.97824 1.21283 0.98819 0.94136 0.98173 1.21409 0.98407 1.01124 0.94004 0.92713 0.91079 0.92517 0.92564 0.91218 0.91905 0.92619 0.90935 0.93470 0.84902 0.85712 0.91494 0.90572 0.85513 0.88191 0.92986 0.98025 1.00666 0.92523 0.93334 0.89432 0.84959 0.83934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 8.29 71.98 0.60 -0.94 16 2 C -0.03 -0.42 0.85 -52.93 -0.05 -0.47 16 3 C -0.14 -1.60 7.13 71.98 0.51 -1.08 16 4 C -0.14 -1.87 8.29 71.98 0.60 -1.27 16 5 C -0.07 -1.26 4.76 -19.86 -0.09 -1.36 16 6 C -0.13 -2.50 8.71 22.27 0.19 -2.30 16 7 C -0.11 -2.48 9.70 22.27 0.22 -2.26 16 8 C -0.11 -2.59 5.51 -19.86 -0.11 -2.70 16 9 C 0.10 2.24 5.91 71.24 0.42 2.66 16 10 O -0.39 -11.96 10.37 -148.98 -1.55 -13.50 16 11 C 0.08 2.64 4.65 30.94 0.14 2.79 16 12 C -0.01 -0.30 7.52 83.57 0.63 0.33 16 13 N -0.48 -21.99 6.32 -933.04 -5.89 -27.89 16 14 C 0.18 10.01 4.57 85.56 0.39 10.40 16 15 C -0.53 -31.50 9.39 25.60 0.24 -31.26 16 16 H 0.06 3.63 7.81 -2.91 -0.02 3.61 16 17 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 18 N -0.94 -58.11 13.29 21.45 0.28 -57.83 16 19 Si 0.98 45.47 29.54 68.60 2.03 47.49 16 20 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 22 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 23 C -0.01 -0.47 7.55 83.57 0.63 0.16 16 24 C -0.11 -2.22 9.70 22.27 0.22 -2.00 16 25 C -0.13 -2.45 8.98 22.27 0.20 -2.25 16 26 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 27 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.06 0.65 7.39 -2.39 -0.02 0.63 16 29 H 0.06 0.67 7.51 -2.39 -0.02 0.65 16 30 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.06 0.65 7.51 -2.39 -0.02 0.63 16 32 H 0.05 0.77 7.39 -2.39 -0.02 0.75 16 33 H 0.07 0.75 8.14 -2.39 -0.02 0.74 16 34 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.13 2.16 7.10 -2.91 -0.02 2.14 16 36 H 0.12 2.62 8.06 -2.91 -0.02 2.59 16 37 H 0.07 1.39 8.09 -2.39 -0.02 1.37 16 38 H 0.08 1.43 8.08 -2.39 -0.02 1.41 16 39 H 0.13 3.22 7.88 -2.39 -0.02 3.20 16 40 H 0.10 3.31 8.14 -2.38 -0.02 3.29 16 41 H 0.05 2.14 7.91 -2.39 -0.02 2.12 16 42 H 0.00 0.10 8.08 -2.39 -0.02 0.08 16 43 H -0.02 -1.49 7.30 -2.39 -0.02 -1.51 16 44 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 45 H 0.05 2.13 7.42 -2.39 -0.02 2.12 16 46 H 0.09 3.20 8.14 -2.38 -0.02 3.18 16 47 H 0.13 2.37 8.06 -2.91 -0.02 2.35 16 48 H 0.14 2.06 5.89 -2.91 -0.02 2.05 16 Total: -1.00 -69.72 384.60 0.98 -68.74 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: 0.90 Total: 14.19 kcal Atomic # 6 Polarization: -36.41 SS G_CDS: 5.20 Total: -31.21 kcal Atomic # 7 Polarization: -80.11 SS G_CDS: -5.61 Total: -85.72 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: -1.55 Total: -13.50 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Total: -69.72 0.98 -68.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204680780.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.210 kcal (2) G-P(sol) polarization free energy of solvation -69.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds