Wall clock time and date at job start Tue Mar 31 2020 08:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.53383 * 2 1 4 4 C 1.53041 * 109.50182 * 239.90294 * 2 1 3 5 5 N 1.46848 * 109.52349 * 299.23747 * 4 2 1 6 6 C 1.46898 * 110.99628 * 174.15648 * 5 4 2 7 7 C 1.50710 * 109.46903 * 170.00089 * 6 5 4 8 8 C 1.38240 * 119.99548 * 269.72806 * 7 6 5 9 9 C 1.38234 * 119.99602 * 179.78532 * 8 7 6 10 10 C 1.38239 * 119.99698 * 0.46399 * 9 8 7 11 11 C 1.38236 * 120.00403 * 359.76861 * 10 9 8 12 12 C 1.38227 * 119.99867 * 90.00019 * 7 6 5 13 13 C 1.46844 * 111.19798 * 298.25740 * 5 4 2 14 14 C 1.53039 * 109.57374 * 61.71045 * 13 5 4 15 15 C 1.53111 * 109.50597 * 120.10207 * 2 1 3 16 16 H 1.09006 * 109.52545 * 182.25570 * 15 2 1 17 17 O 1.42905 * 109.52397 * 302.38074 * 15 2 1 18 18 C 1.42894 * 114.00232 * 209.87528 * 17 15 2 19 19 C 1.50702 * 109.47457 * 180.02562 * 18 17 15 20 20 H 1.08002 * 119.99446 * 359.97438 * 19 18 17 21 21 C 1.37871 * 120.00072 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99826 * 179.72119 * 21 19 18 23 23 Si 1.86800 * 120.00406 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46758 * 269.72576 * 23 21 19 25 25 H 1.48499 * 109.47026 * 29.72423 * 23 21 19 26 26 H 1.48496 * 109.47474 * 149.72459 * 23 21 19 27 27 H 1.09004 * 109.46966 * 299.89719 * 1 2 3 28 28 H 1.08994 * 109.47051 * 59.89972 * 1 2 3 29 29 H 1.09004 * 109.47083 * 179.90303 * 1 2 3 30 30 H 1.09007 * 109.47064 * 180.10485 * 3 2 1 31 31 H 1.09001 * 109.47393 * 300.10252 * 3 2 1 32 32 H 1.08997 * 109.47298 * 60.10305 * 3 2 1 33 33 H 1.09007 * 109.45987 * 59.25192 * 4 2 1 34 34 H 1.08999 * 109.46331 * 179.21597 * 4 2 1 35 35 H 1.09002 * 109.47825 * 289.99688 * 6 5 4 36 36 H 1.08997 * 109.47253 * 50.00637 * 6 5 4 37 37 H 1.07995 * 120.00530 * 0.02562 * 8 7 6 38 38 H 1.07995 * 120.00139 * 180.25612 * 9 8 7 39 39 H 1.08002 * 119.99765 * 179.78968 * 10 9 8 40 40 H 1.07997 * 119.99922 * 179.97438 * 11 10 9 41 41 H 1.07995 * 120.00129 * 359.97438 * 12 7 6 42 42 H 1.09000 * 109.46121 * 181.75535 * 13 5 4 43 43 H 1.08998 * 109.46392 * 301.72659 * 13 5 4 44 44 H 1.09004 * 109.55808 * 180.94401 * 14 13 5 45 45 H 1.09004 * 109.45389 * 60.82610 * 14 13 5 46 46 H 1.09000 * 109.47628 * 59.99577 * 18 17 15 47 47 H 1.09001 * 109.47017 * 299.99627 * 18 17 15 48 48 H 0.96999 * 120.00128 * 180.27192 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0416 1.4419 0.0000 4 6 2.0409 -0.7234 -1.2481 5 7 1.5675 -2.1135 -1.2380 6 6 1.9222 -2.7994 -2.4876 7 6 1.6443 -4.2740 -2.3475 8 6 2.6307 -5.1218 -1.8792 9 6 2.3744 -6.4737 -1.7465 10 6 1.1348 -6.9792 -2.0912 11 6 0.1499 -6.1321 -2.5640 12 6 0.4049 -4.7796 -2.6925 13 6 2.0846 -2.8420 -0.0725 14 6 1.5763 -2.1823 1.2114 15 6 2.0413 -0.7238 1.2486 16 1 3.1306 -0.6892 1.2694 17 8 1.5208 -0.0864 2.4169 18 6 2.3739 -0.1807 3.5594 19 6 1.7295 0.5212 4.7269 20 1 0.7650 0.9925 4.6082 21 6 2.3716 0.5625 5.9463 22 7 1.8116 1.1797 6.9637 23 14 4.0400 -0.2521 6.1515 24 1 3.8534 -1.6605 6.5839 25 1 4.7672 -0.2239 4.8570 26 1 4.8259 0.4804 7.1767 27 1 -0.3633 0.5123 0.8909 28 1 -0.3633 0.5154 -0.8890 29 1 -0.3633 -1.0277 -0.0017 30 1 3.1317 1.4407 -0.0019 31 1 1.6774 1.9567 -0.8891 32 1 1.6804 1.9556 0.8909 33 1 1.6668 -0.2188 -2.1390 34 1 3.1308 -0.7109 -1.2546 35 1 1.3276 -2.3939 -3.3062 36 1 2.9809 -2.6477 -2.6975 37 1 3.6003 -4.7274 -1.6134 38 1 3.1436 -7.1354 -1.3768 39 1 0.9356 -8.0359 -1.9907 40 1 -0.8184 -6.5272 -2.8336 41 1 -0.3644 -4.1178 -3.0621 42 1 1.7423 -3.8762 -0.1096 43 1 3.1743 -2.8196 -0.0844 44 1 1.9739 -2.7131 2.0765 45 1 0.4871 -2.2176 1.2310 46 1 3.3324 0.2884 3.3370 47 1 2.5322 -1.2298 3.8090 48 1 2.2651 1.2122 7.8206 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205610199.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:01:19 Heat of formation + Delta-G solvation = -24.715312 kcal Electronic energy + Delta-G solvation = -25525.594855 eV Core-core repulsion = 22158.974112 eV Total energy + Delta-G solvation = -3366.620743 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.23232 -39.07256 -36.57119 -34.52546 -32.57970 -32.03252 -31.09031 -30.75291 -28.00953 -26.85537 -26.47481 -25.64922 -22.92947 -22.81482 -21.97516 -21.57893 -20.58237 -18.37064 -16.93376 -16.83475 -16.05531 -15.65371 -15.59418 -15.35996 -14.69869 -14.63654 -14.46582 -14.19073 -13.74764 -13.60033 -13.10252 -13.00593 -12.91428 -12.77527 -12.60201 -12.32732 -11.91772 -11.70655 -11.58894 -11.46009 -11.31860 -11.19534 -11.06509 -11.04702 -10.83986 -10.82118 -10.37160 -10.20370 -9.82300 -9.78765 -9.14733 -9.08746 -8.99306 -8.76989 -8.37597 -8.26774 -6.10872 -4.09360 1.12397 1.22035 3.24230 3.31332 3.32653 3.49737 4.03299 4.35738 4.51135 4.56252 4.65764 4.80671 4.87972 4.90991 5.05083 5.12444 5.20595 5.22723 5.30030 5.33821 5.45386 5.49633 5.50500 5.59889 5.64282 5.73271 5.80190 5.82704 5.86134 5.93641 6.05223 6.14051 6.17421 6.26761 6.31729 6.32283 6.39375 6.43693 6.47190 6.60215 6.66657 6.70548 6.79890 6.88535 7.02953 7.07018 7.10487 7.62178 8.07272 8.69388 9.01387 9.49003 11.02255 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.017206 B = 0.003578 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.932069 B = 7824.785431 C = 8745.851061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.055 4.055 3 C -0.139 4.139 4 C 0.069 3.931 5 N -0.527 5.527 6 C 0.093 3.907 7 C -0.080 4.080 8 C -0.114 4.114 9 C -0.122 4.122 10 C -0.122 4.122 11 C -0.122 4.122 12 C -0.099 4.099 13 C 0.056 3.944 14 C -0.140 4.140 15 C 0.097 3.903 16 H 0.043 0.957 17 O -0.365 6.365 18 C 0.170 3.830 19 C -0.516 4.516 20 H 0.082 0.918 21 C 0.072 3.928 22 N -0.896 5.896 23 Si 0.874 3.126 24 H -0.274 1.274 25 H -0.267 1.267 26 H -0.282 1.282 27 H 0.062 0.938 28 H 0.041 0.959 29 H 0.064 0.936 30 H 0.046 0.954 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.031 0.969 35 H 0.083 0.917 36 H 0.040 0.960 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.124 0.876 42 H 0.080 0.920 43 H 0.027 0.973 44 H 0.066 0.934 45 H 0.081 0.919 46 H 0.000 1.000 47 H -0.004 1.004 48 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.194 -12.389 -22.405 25.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.055 4.055 3 C -0.196 4.196 4 C -0.059 4.059 5 N -0.251 5.251 6 C -0.034 4.034 7 C -0.080 4.080 8 C -0.133 4.133 9 C -0.140 4.140 10 C -0.140 4.140 11 C -0.140 4.140 12 C -0.117 4.117 13 C -0.071 4.071 14 C -0.178 4.178 15 C 0.037 3.963 16 H 0.061 0.939 17 O -0.284 6.284 18 C 0.094 3.906 19 C -0.554 4.554 20 H 0.101 0.899 21 C -0.129 4.129 22 N -0.534 5.534 23 Si 0.700 3.300 24 H -0.200 1.200 25 H -0.192 1.192 26 H -0.208 1.208 27 H 0.081 0.919 28 H 0.060 0.940 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.049 0.951 35 H 0.101 0.899 36 H 0.058 0.942 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.142 0.858 42 H 0.099 0.901 43 H 0.046 0.954 44 H 0.085 0.915 45 H 0.100 0.900 46 H 0.018 0.982 47 H 0.013 0.987 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.540 -12.213 -22.160 25.308 hybrid contribution 2.155 -0.666 0.310 2.277 sum 2.696 -12.879 -21.851 25.507 Atomic orbital electron populations 1.21662 0.93207 1.02350 1.00978 1.20597 0.97585 0.94842 0.92477 1.21789 1.00185 0.95246 1.02410 1.22172 0.96979 0.88155 0.98565 1.62050 1.59828 1.01868 1.01388 1.21079 0.99168 0.89892 0.93269 1.19774 0.94202 0.94984 0.99037 1.21099 0.99058 0.93605 0.99492 1.21116 0.97248 0.95310 1.00317 1.21154 0.93685 0.99744 0.99456 1.21166 0.99199 0.93715 0.99888 1.21041 0.96205 0.95184 0.99300 1.22187 0.96597 0.98283 0.90060 1.22147 1.03093 0.96578 0.95989 1.21930 0.96042 0.91087 0.87192 0.93851 1.87946 1.46342 1.75813 1.18305 1.20606 0.90254 0.95063 0.84642 1.20889 1.07229 1.34961 0.92293 0.89944 1.24757 0.97565 0.95130 0.95473 1.69875 1.38712 1.42950 1.01898 0.86884 0.84678 0.80007 0.78388 1.19954 1.19185 1.20795 0.91875 0.93974 0.91708 0.93467 0.93147 0.90744 0.90511 0.95073 0.89855 0.94177 0.86418 0.86182 0.86268 0.86113 0.85823 0.90129 0.95429 0.91494 0.90028 0.98230 0.98659 0.92407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.89 7.87 37.16 0.29 -1.59 16 2 C -0.05 -0.81 0.60 -154.43 -0.09 -0.91 16 3 C -0.14 -2.03 8.36 37.16 0.31 -1.72 16 4 C 0.07 0.85 4.14 -3.83 -0.02 0.83 16 5 N -0.53 -6.36 4.08 -236.11 -0.96 -7.33 16 6 C 0.09 0.92 5.43 -4.97 -0.03 0.90 16 7 C -0.08 -0.80 4.11 -104.62 -0.43 -1.23 16 8 C -0.11 -1.12 7.82 -39.58 -0.31 -1.43 16 9 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 10 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 11 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 12 C -0.10 -0.95 9.70 -39.59 -0.38 -1.34 16 13 C 0.06 0.75 4.58 -3.83 -0.02 0.73 16 14 C -0.14 -2.27 5.36 -26.65 -0.14 -2.42 16 15 C 0.10 1.73 1.76 -26.61 -0.05 1.68 16 16 H 0.04 0.79 7.79 -51.93 -0.40 0.38 16 17 O -0.37 -8.35 8.65 -35.23 -0.30 -8.66 16 18 C 0.17 4.31 4.57 36.01 0.16 4.48 16 19 C -0.52 -15.32 9.99 -34.44 -0.34 -15.67 16 20 H 0.08 2.68 8.06 -52.49 -0.42 2.26 16 21 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 22 N -0.90 -27.74 13.96 55.43 0.77 -26.97 16 23 Si 0.87 21.56 27.47 -169.99 -4.67 16.89 16 24 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 26 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 27 H 0.06 1.10 7.63 -51.93 -0.40 0.70 16 28 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.99 6.02 -51.93 -0.31 0.68 16 30 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 1.28 7.76 -51.93 -0.40 0.88 16 33 H 0.08 0.83 8.12 -51.93 -0.42 0.41 16 34 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.08 0.74 8.09 -51.93 -0.42 0.32 16 36 H 0.04 0.38 8.02 -51.93 -0.42 -0.03 16 37 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 38 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 39 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 40 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 41 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 42 H 0.08 1.05 5.65 -51.93 -0.29 0.76 16 43 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.07 1.13 7.95 -51.93 -0.41 0.72 16 45 H 0.08 1.39 6.59 -51.93 -0.34 1.05 16 46 H 0.00 0.00 7.14 -51.93 -0.37 -0.37 16 47 H 0.00 -0.11 7.37 -51.93 -0.38 -0.49 16 48 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 370.31 15.07 5.58 5.58 Total: -1.00 -31.29 370.31 -10.31 -41.60 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -8.39 Total: -1.01 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: -2.33 Total: -20.10 kcal Atomic # 7 Polarization: -34.10 SS G_CDS: -0.19 Total: -34.29 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: -0.30 Total: -8.66 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.29 -10.31 -41.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205610199.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.887 kcal (2) G-P(sol) polarization free energy of solvation -31.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds