Wall clock time and date at job start Tue Mar 31 2020 08:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.53383 * 2 1 4 4 C 1.53041 * 109.50182 * 239.90294 * 2 1 3 5 5 N 1.46848 * 109.52349 * 299.23747 * 4 2 1 6 6 C 1.46898 * 110.99628 * 174.15648 * 5 4 2 7 7 C 1.50710 * 109.46903 * 170.00089 * 6 5 4 8 8 C 1.38240 * 119.99548 * 269.72806 * 7 6 5 9 9 C 1.38234 * 119.99602 * 179.78532 * 8 7 6 10 10 C 1.38239 * 119.99698 * 0.46399 * 9 8 7 11 11 C 1.38236 * 120.00403 * 359.76861 * 10 9 8 12 12 C 1.38227 * 119.99867 * 90.00019 * 7 6 5 13 13 C 1.46844 * 111.19798 * 298.25740 * 5 4 2 14 14 C 1.53039 * 109.57374 * 61.71045 * 13 5 4 15 15 C 1.53111 * 109.50597 * 120.10207 * 2 1 3 16 16 H 1.09006 * 109.52545 * 182.25570 * 15 2 1 17 17 O 1.42905 * 109.52397 * 302.38074 * 15 2 1 18 18 C 1.42894 * 114.00232 * 209.87528 * 17 15 2 19 19 C 1.50702 * 109.47457 * 180.02562 * 18 17 15 20 20 H 1.08002 * 119.99446 * 359.97438 * 19 18 17 21 21 C 1.37871 * 120.00072 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99826 * 179.72119 * 21 19 18 23 23 Si 1.86800 * 120.00406 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46758 * 269.72576 * 23 21 19 25 25 H 1.48499 * 109.47026 * 29.72423 * 23 21 19 26 26 H 1.48496 * 109.47474 * 149.72459 * 23 21 19 27 27 H 1.09004 * 109.46966 * 299.89719 * 1 2 3 28 28 H 1.08994 * 109.47051 * 59.89972 * 1 2 3 29 29 H 1.09004 * 109.47083 * 179.90303 * 1 2 3 30 30 H 1.09007 * 109.47064 * 180.10485 * 3 2 1 31 31 H 1.09001 * 109.47393 * 300.10252 * 3 2 1 32 32 H 1.08997 * 109.47298 * 60.10305 * 3 2 1 33 33 H 1.09007 * 109.45987 * 59.25192 * 4 2 1 34 34 H 1.08999 * 109.46331 * 179.21597 * 4 2 1 35 35 H 1.09002 * 109.47825 * 289.99688 * 6 5 4 36 36 H 1.08997 * 109.47253 * 50.00637 * 6 5 4 37 37 H 1.07995 * 120.00530 * 0.02562 * 8 7 6 38 38 H 1.07995 * 120.00139 * 180.25612 * 9 8 7 39 39 H 1.08002 * 119.99765 * 179.78968 * 10 9 8 40 40 H 1.07997 * 119.99922 * 179.97438 * 11 10 9 41 41 H 1.07995 * 120.00129 * 359.97438 * 12 7 6 42 42 H 1.09000 * 109.46121 * 181.75535 * 13 5 4 43 43 H 1.08998 * 109.46392 * 301.72659 * 13 5 4 44 44 H 1.09004 * 109.55808 * 180.94401 * 14 13 5 45 45 H 1.09004 * 109.45389 * 60.82610 * 14 13 5 46 46 H 1.09000 * 109.47628 * 59.99577 * 18 17 15 47 47 H 1.09001 * 109.47017 * 299.99627 * 18 17 15 48 48 H 0.96999 * 120.00128 * 180.27192 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0416 1.4419 0.0000 4 6 2.0409 -0.7234 -1.2481 5 7 1.5675 -2.1135 -1.2380 6 6 1.9222 -2.7994 -2.4876 7 6 1.6443 -4.2740 -2.3475 8 6 2.6307 -5.1218 -1.8792 9 6 2.3744 -6.4737 -1.7465 10 6 1.1348 -6.9792 -2.0912 11 6 0.1499 -6.1321 -2.5640 12 6 0.4049 -4.7796 -2.6925 13 6 2.0846 -2.8420 -0.0725 14 6 1.5763 -2.1823 1.2114 15 6 2.0413 -0.7238 1.2486 16 1 3.1306 -0.6892 1.2694 17 8 1.5208 -0.0864 2.4169 18 6 2.3739 -0.1807 3.5594 19 6 1.7295 0.5212 4.7269 20 1 0.7650 0.9925 4.6082 21 6 2.3716 0.5625 5.9463 22 7 1.8116 1.1797 6.9637 23 14 4.0400 -0.2521 6.1515 24 1 3.8534 -1.6605 6.5839 25 1 4.7672 -0.2239 4.8570 26 1 4.8259 0.4804 7.1767 27 1 -0.3633 0.5123 0.8909 28 1 -0.3633 0.5154 -0.8890 29 1 -0.3633 -1.0277 -0.0017 30 1 3.1317 1.4407 -0.0019 31 1 1.6774 1.9567 -0.8891 32 1 1.6804 1.9556 0.8909 33 1 1.6668 -0.2188 -2.1390 34 1 3.1308 -0.7109 -1.2546 35 1 1.3276 -2.3939 -3.3062 36 1 2.9809 -2.6477 -2.6975 37 1 3.6003 -4.7274 -1.6134 38 1 3.1436 -7.1354 -1.3768 39 1 0.9356 -8.0359 -1.9907 40 1 -0.8184 -6.5272 -2.8336 41 1 -0.3644 -4.1178 -3.0621 42 1 1.7423 -3.8762 -0.1096 43 1 3.1743 -2.8196 -0.0844 44 1 1.9739 -2.7131 2.0765 45 1 0.4871 -2.2176 1.2310 46 1 3.3324 0.2884 3.3370 47 1 2.5322 -1.2298 3.8090 48 1 2.2651 1.2122 7.8206 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205610199.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:01:18 Heat of formation + Delta-G solvation = -42.621112 kcal Electronic energy + Delta-G solvation = -25526.371309 eV Core-core repulsion = 22158.974112 eV Total energy + Delta-G solvation = -3367.397197 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.25628 -39.99281 -38.00519 -35.76623 -34.74391 -33.10347 -31.79448 -31.72379 -30.06467 -28.08375 -27.41709 -26.78941 -24.41518 -23.53547 -23.43256 -22.84267 -21.44207 -19.76640 -18.85607 -17.61374 -17.50262 -17.05215 -16.48296 -16.26935 -16.18505 -16.03250 -15.62792 -15.39647 -14.99715 -14.76964 -14.40560 -14.25391 -14.10245 -13.89203 -13.77449 -13.41008 -13.11588 -13.05869 -12.87043 -12.77115 -12.73909 -12.57661 -12.38380 -12.22875 -11.88466 -11.85144 -11.82854 -11.63839 -11.54470 -11.20079 -11.14434 -10.91575 -10.17876 -9.75852 -9.67978 -9.16674 -8.39050 -6.46297 0.44123 0.54783 1.29508 1.32359 1.43091 2.26503 2.73901 2.93280 3.02610 3.18224 3.67086 3.75529 3.89475 3.98216 4.05230 4.17332 4.19936 4.26322 4.30813 4.35979 4.44625 4.44891 4.53726 4.62359 4.65367 4.66347 4.76234 4.81586 4.83864 4.88432 4.91064 4.95473 5.03240 5.07987 5.15020 5.17112 5.20661 5.22120 5.35448 5.42218 5.49714 5.58766 5.61933 5.66809 5.73700 5.96293 6.09503 6.11711 6.18866 6.57805 6.78001 7.18317 8.78173 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.017206 B = 0.003578 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.932069 B = 7824.785431 C = 8745.851061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.054 4.054 3 C -0.136 4.136 4 C 0.076 3.924 5 N -0.534 5.534 6 C 0.097 3.903 7 C -0.092 4.092 8 C -0.125 4.125 9 C -0.132 4.132 10 C -0.129 4.129 11 C -0.130 4.130 12 C -0.110 4.110 13 C 0.070 3.930 14 C -0.136 4.136 15 C 0.087 3.913 16 H 0.044 0.956 17 O -0.388 6.388 18 C 0.184 3.816 19 C -0.541 4.541 20 H 0.030 0.970 21 C 0.015 3.985 22 N -0.941 5.941 23 Si 0.951 3.049 24 H -0.260 1.260 25 H -0.249 1.249 26 H -0.271 1.271 27 H 0.027 0.973 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.037 0.963 33 H 0.101 0.899 34 H 0.038 0.962 35 H 0.097 0.903 36 H 0.049 0.951 37 H 0.122 0.878 38 H 0.135 0.865 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.131 0.869 42 H 0.084 0.916 43 H 0.034 0.966 44 H 0.054 0.946 45 H 0.067 0.933 46 H 0.005 0.995 47 H 0.004 0.996 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.064 -14.067 -24.699 28.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.054 4.054 3 C -0.193 4.193 4 C -0.051 4.051 5 N -0.258 5.258 6 C -0.030 4.030 7 C -0.092 4.092 8 C -0.144 4.144 9 C -0.149 4.149 10 C -0.147 4.147 11 C -0.148 4.148 12 C -0.129 4.129 13 C -0.058 4.058 14 C -0.174 4.174 15 C 0.028 3.972 16 H 0.062 0.938 17 O -0.307 6.307 18 C 0.108 3.892 19 C -0.579 4.579 20 H 0.049 0.951 21 C -0.183 4.183 22 N -0.581 5.581 23 Si 0.773 3.227 24 H -0.184 1.184 25 H -0.172 1.172 26 H -0.196 1.196 27 H 0.046 0.954 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.056 0.944 33 H 0.119 0.881 34 H 0.057 0.943 35 H 0.115 0.885 36 H 0.067 0.933 37 H 0.140 0.860 38 H 0.152 0.848 39 H 0.155 0.845 40 H 0.155 0.845 41 H 0.149 0.851 42 H 0.102 0.898 43 H 0.052 0.948 44 H 0.073 0.927 45 H 0.086 0.914 46 H 0.023 0.977 47 H 0.021 0.979 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.396 -13.894 -24.484 28.253 hybrid contribution 1.432 -0.127 0.997 1.750 sum 3.829 -14.021 -23.487 27.621 Atomic orbital electron populations 1.21574 0.93581 1.01889 1.00387 1.20638 0.97252 0.95122 0.92411 1.21749 1.00579 0.95005 1.01993 1.22105 0.97375 0.88125 0.97523 1.62005 1.60054 1.01853 1.01891 1.21110 0.99958 0.89658 0.92227 1.19864 0.94536 0.95148 0.99686 1.21252 0.99324 0.94031 0.99744 1.21385 0.97903 0.95458 1.00203 1.21458 0.93535 1.00809 0.98912 1.21447 1.00087 0.93648 0.99617 1.21239 0.96374 0.95771 0.99500 1.22000 0.96723 0.98092 0.89009 1.22076 1.02170 0.95620 0.97576 1.22301 0.96182 0.92239 0.86440 0.93784 1.87921 1.46640 1.76908 1.19222 1.20261 0.90042 0.94604 0.84296 1.21132 1.05919 1.35912 0.94900 0.95120 1.25795 1.02503 0.95453 0.94585 1.70028 1.41052 1.44233 1.02747 0.85668 0.78466 0.79236 0.79362 1.18419 1.17233 1.19596 0.95372 0.91547 0.92074 0.92788 0.90322 0.94357 0.88091 0.94333 0.88456 0.93315 0.85966 0.84752 0.84470 0.84488 0.85140 0.89802 0.94819 0.92681 0.91416 0.97690 0.97860 0.91798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.50 7.87 71.98 0.57 -2.93 16 2 C -0.05 -1.54 0.60 -52.13 -0.03 -1.58 16 3 C -0.14 -3.84 8.36 71.98 0.60 -3.24 16 4 C 0.08 1.64 4.14 86.33 0.36 2.00 16 5 N -0.53 -11.53 4.08 -900.91 -3.68 -15.21 16 6 C 0.10 1.64 5.43 85.56 0.46 2.10 16 7 C -0.09 -1.65 4.11 -19.86 -0.08 -1.74 16 8 C -0.12 -2.20 7.82 22.27 0.17 -2.02 16 9 C -0.13 -2.14 10.05 22.27 0.22 -1.91 16 10 C -0.13 -1.99 10.05 22.27 0.22 -1.77 16 11 C -0.13 -2.07 10.05 22.27 0.22 -1.84 16 12 C -0.11 -1.91 9.70 22.27 0.22 -1.70 16 13 C 0.07 1.72 4.58 86.33 0.40 2.12 16 14 C -0.14 -4.39 5.36 30.65 0.16 -4.22 16 15 C 0.09 3.08 1.76 30.67 0.05 3.13 16 16 H 0.04 1.56 7.79 -2.38 -0.02 1.54 16 17 O -0.39 -18.35 8.65 -148.98 -1.29 -19.64 16 18 C 0.18 9.48 4.57 71.24 0.33 9.81 16 19 C -0.54 -33.56 9.99 25.60 0.26 -33.30 16 20 H 0.03 2.14 8.06 -2.91 -0.02 2.12 16 21 C 0.01 0.88 5.47 84.65 0.46 1.34 16 22 N -0.94 -59.97 13.96 21.45 0.30 -59.67 16 23 Si 0.95 44.21 27.47 68.60 1.88 46.09 16 24 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 25 H -0.25 -10.75 6.54 99.48 0.65 -10.10 16 26 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 27 H 0.03 1.01 7.63 -2.39 -0.02 0.99 16 28 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.06 1.85 6.02 -2.38 -0.01 1.84 16 30 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 31 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.04 1.35 7.76 -2.39 -0.02 1.33 16 33 H 0.10 1.75 8.12 -2.38 -0.02 1.73 16 34 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.10 1.39 8.09 -2.39 -0.02 1.37 16 36 H 0.05 0.76 8.02 -2.39 -0.02 0.74 16 37 H 0.12 1.96 8.06 -2.91 -0.02 1.93 16 38 H 0.13 1.69 8.06 -2.91 -0.02 1.67 16 39 H 0.14 1.53 8.06 -2.91 -0.02 1.50 16 40 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 41 H 0.13 1.99 8.06 -2.91 -0.02 1.96 16 42 H 0.08 2.05 5.65 -2.39 -0.01 2.04 16 43 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.05 1.86 7.95 -2.39 -0.02 1.84 16 45 H 0.07 2.34 6.59 -2.39 -0.02 2.33 16 46 H 0.01 0.27 7.14 -2.39 -0.02 0.25 16 47 H 0.00 0.18 7.37 -2.39 -0.02 0.17 16 48 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 Total: -1.00 -70.58 370.31 2.66 -67.92 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 0.85 Total: 16.26 kcal Atomic # 6 Polarization: -40.34 SS G_CDS: 4.60 Total: -35.74 kcal Atomic # 7 Polarization: -71.50 SS G_CDS: -3.38 Total: -74.88 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -1.29 Total: -19.64 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 1.88 Total: 46.09 kcal Total: -70.58 2.66 -67.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205610199.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.296 kcal (2) G-P(sol) polarization free energy of solvation -70.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds